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FROM registry.fedoraproject.org/fedora:33
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ENV NAME=compneuro VERSION=0 ARCH=x86_64
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LABEL com.redhat.component="$NAME" \
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name="$FGC/$NAME" \
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version="$VERSION" \
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architecture="$ARCH" \
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run="podman run -it IMAGE" \
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maintainer="NeuroFedora SIG <neuro-sig@lists.fedoraproject.org>" \
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url="https://neuro.fedoraproject.org" \
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summary="The CompNeuro container image includes commonly used neuron modelling and simulation tools."
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# Installing Neuro Fedora Packages and jupyter notebook
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RUN dnf --setopt=tsflags=nodocs groupinstall -y --with-optional "Neuron Modelling Simulators" --skip-broken && \
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dnf clean all
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COPY README.md /
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CMD ["/bin/bash"]
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README.md
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README.md
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# compneuro
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# CompNeuro Fedora container image
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The CompNeuro container image includes commonly used neuron modelling and simulation tools
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This container image includes the same set of neuronal modelling and simulation packages included in the CompNeuro Fedora lab image:
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- bionetgen
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- calcium-calculator
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- COPASI
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- genesis-simulator
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- moose
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- python3-brian2
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- python3-nest
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- python3-netpyne
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- python3-neuron
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- python3-PyLEMS
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- smoldyn
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For more information, please refer to the NeuroFedora documentation at https://neuro.fedoraproject.org.
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The container can be pulled and run using either Podman or Docker:
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```
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$ podman pull registry.fedoraproject.org/compneuro:latest
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$ podman run -it <image name>
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```
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This will give you a terminal that you can use.
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You can use this image as a base image to build other images that include your simulation and other sources to share/distribute.
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