.gitignore

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+vhybridize-0.5.9.tar.gz

dead.package

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-Upstream is dead

sources

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+f962b32a9bae82bd67e28f29ad783327  vhybridize-0.5.9.tar.gz

vhybridize.spec

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+Name:           vhybridize
+Version:        0.5.9
+Release:        20%{?dist}
+Summary:        Virtual Hybridization command line tools
+
+License:        GPLv3+
+URL:            http://ygingras.net/bioinfo
+Source0:        http://ygingras.net/files/%{name}-%{version}.tar.gz
+BuildArch:      noarch
+
+BuildRequires:  python2-devel
+BuildRequires:  python2-setuptools
+
+%description
+Virtual Hybridization uses sets of short probes to generate datasets
+for comparative genomics: given a DNA sequence and a set of probes,
+the typical output will give a sequence of oriented probe hits along
+the DNA sequence. Other tools are supplied to allow simple manipulations
+such as format conversion and extraction of permutations.
+
+%prep
+%setup -q
+
+%build
+%{__python2} setup.py build
+
+%install
+%{__python2} setup.py install --skip-build --root %{buildroot}
+# Remove shebang
+for file in \
+    %{buildroot}%{python2_sitelib}/%{name}/scripts/{to_permutation.py,split_multi_fasta.py} \
+    %{buildroot}%{python2_sitelib}/%{name}/{utils.py,locate.py}   \
+    %{buildroot}%{python2_sitelib}/%{name}/scripts/{to_vhx.py,merge.py,filter.py}; do
+    sed -i -e '/^#!\//, 1d' $file
+done
+
+%files
+%doc AUTHORS.txt COPYING.txt README.txt TODO.txt docs/ examples/
+%{_bindir}/vhy*
+%{python2_sitelib}/%{name}/
+%{python2_sitelib}/%{name}*.egg-info
+
+%changelog
+* Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.9-20
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
+
+* Fri Feb 09 2018 Iryna Shcherbina <ishcherb@redhat.com> - 0.5.9-19
+- Update Python 2 dependency declarations to new packaging standards
+  (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3)
+
+* Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.9-18
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
+
+* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.9-17
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
+
+* Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.9-16
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
+
+* Tue Jul 19 2016 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-15
+- https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages
+
+* Fri Feb 05 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.5.9-14
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
+
+* Fri Jun 19 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-13
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
+
+* Sun Jun 08 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-12
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
+
+* Mon Oct 28 2013 Fabian Affolter <mail@fabian-affolter.ch> - 0.5.9-11
+- Spec file update
+
+* Sun Aug 04 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-10
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
+
+* Fri Feb 15 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-9
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
+
+* Sun Jul 22 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-8
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
+
+* Sat Jan 14 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-7
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
+
+* Mon Feb 07 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-6
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
+
+* Thu Jul 22 2010 David Malcolm <dmalcolm@redhat.com> - 0.5.9-5
+- Rebuilt for https://fedoraproject.org/wiki/Features/Python_2.7/MassRebuild
+
+* Sun Jul 26 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
+
+* Wed Feb 25 2009 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.5.9-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
+
+* Sat Jan 24 2009 Fabian Affolter <mail@fabian-affolter.ch> - 0.5.9-2
+- Fixes from #481509 Comment #1
+
+* Sat Jan 24 2009 Fabian Affolter <mail@fabian-affolter.ch> - 0.5.9-1
+- Initial package for Fedora