diff --git a/Macaulay2-1.11-nauty-paths.patch b/Macaulay2-1.11-nauty-paths.patch new file mode 100644 index 0000000..c270fa5 --- /dev/null +++ b/Macaulay2-1.11-nauty-paths.patch @@ -0,0 +1,46 @@ +--- M2/Macaulay2/packages/NautyGraphs.m2.orig 2016-08-15 12:38:31.000000000 -0600 ++++ M2/Macaulay2/packages/NautyGraphs.m2 2017-02-27 21:49:22.976044001 -0700 +@@ -30,9 +30,9 @@ newPackage select(( + ------------------- + + -- Check the ~/.Macaulay2/init-NautyGraphs.m2 file for the absolute path. +--- If it's not there, then use the M2-Programs directory. ++-- If it's not there, then use the system binary directory. + nauty'path = (options NautyGraphs).Configuration#"path"; +-if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs"; ++if nauty'path == "" then nauty'path = "/usr/bin/"; + + ------------------- + -- Exports +@@ -420,7 +420,7 @@ callNauty (String, List) := List => opts + scan(graphToString \ dataList, d -> o << d << endl); + close o; + -- try to harvest the lines +- r := lines try get openIn ("!" | nauty'path | cmdStr | " <" | infn | " 2>" | erfn) ++ r := lines try get openIn ("!" | nauty'path | "nauty-" | cmdStr | " <" | infn | " 2>" | erfn) + else ( + -- nauty errored, harvest the error + e := last separate(":", first lines get openIn erfn); +--- M2/Macaulay2/packages/Nauty.m2.orig 2016-08-15 12:38:31.000000000 -0600 ++++ M2/Macaulay2/packages/Nauty.m2 2017-02-27 21:49:22.977043998 -0700 +@@ -37,9 +37,9 @@ newPackage select(( + ------------------- + + -- Check the ~/.Macaulay2/init-Nauty.m2 file for the absolute path. +--- If it's not there, then use the M2-Programs directory. ++-- If it's not there, then use the system binary directory. + nauty'path = (options Nauty).Configuration#"path"; +-if nauty'path == "" then nauty'path = prefixDirectory | currentLayout#"programs"; ++if nauty'path == "" then nauty'path = "/usr/bin/"; + + ------------------- + -- Exports +@@ -472,7 +472,7 @@ callNauty (String, List) := List => opts + scan(graphToString \ dataList, d -> o << d << endl); + close o; + -- try to harvest the lines +- r := lines try get openIn ("!" | nauty'path | cmdStr | " <" | infn | " 2>" | erfn) ++ r := lines try get openIn ("!" | nauty'path | "nauty-" | cmdStr | " <" | infn | " 2>" | erfn) + else ( + -- nauty errored, harvest the error + e := last separate(":", first lines get openIn erfn); diff --git a/Macaulay2-1.17-configure.patch b/Macaulay2-1.12-configure.patch similarity index 55% rename from Macaulay2-1.17-configure.patch rename to Macaulay2-1.12-configure.patch index 8086b88..58f9764 100644 --- a/Macaulay2-1.17-configure.patch +++ b/Macaulay2-1.12-configure.patch @@ -1,15 +1,17 @@ ---- M2/configure.ac.orig 2021-01-12 14:20:55.509886490 -0700 -+++ M2/configure.ac 2021-01-12 14:21:55.866785423 -0700 -@@ -252,9 +252,9 @@ AC_MSG_NOTICE([checking for C compiler f +--- M2/configure.ac.orig 2018-08-06 14:16:21.725371828 -0600 ++++ M2/configure.ac 2018-08-06 14:22:27.632902514 -0600 +@@ -266,10 +266,10 @@ AC_MSG_NOTICE([checking for C compiler f dnl always compile with "-g", so we can debug even optimized versions if test "$GCC" = yes -then CFLAGS="$CFLAGS -g3" - CXXFLAGS="$CXXFLAGS -g3" - LDFLAGS="$LDFLAGS -g3" +- LDFLAGS_FOR_BUILD="$LDFLAGS_FOR_BUILD -g3" +then CFLAGS="$CFLAGS -g" + CXXFLAGS="$CXXFLAGS -g" + LDFLAGS="$LDFLAGS -g" ++ LDFLAGS_FOR_BUILD="$LDFLAGS_FOR_BUILD -g" else CFLAGS="$CFLAGS -g" CXXFLAGS="$CXXFLAGS -g" LDFLAGS="$LDFLAGS -g" diff --git a/Macaulay2-1.15-fplll.patch b/Macaulay2-1.15-fplll.patch new file mode 100644 index 0000000..c216db9 --- /dev/null +++ b/Macaulay2-1.15-fplll.patch @@ -0,0 +1,73 @@ +--- M2/Macaulay2/e/fplll-interface.cpp.orig 2020-05-22 08:58:09.000000000 -0600 ++++ M2/Macaulay2/e/fplll-interface.cpp 2020-05-31 20:25:06.775601853 -0600 +@@ -1,10 +1,10 @@ +-#include "fplll-interface.hpp" +-#include "mutablemat.hpp" +- + #ifdef HAVE_FPLLL + #include +-#include + #endif ++#include ++ ++#include "fplll-interface.hpp" ++#include "mutablemat.hpp" + + bool fp_LLL(MutableMatrix *M, MutableMatrix *U, int strategy) + { +@@ -15,15 +15,15 @@ bool fp_LLL(MutableMatrix *M, MutableMat + assert(U == NULL); + double delta = 0.99; + double eta = 0.51; +- LLLMethod method = LM_WRAPPER; +- FloatType floatType = FT_DEFAULT; ++ fplll::LLLMethod method = fplll::LM_WRAPPER; ++ fplll::FloatType floatType = fplll::FT_DEFAULT; + int precision = 0; +- int flags = LLL_DEFAULT; ++ int flags = fplll::LLL_DEFAULT; + + int ncols = static_cast(M->n_rows()); + int nrows = static_cast(M->n_cols()); + +- ZZ_mat mat(nrows, ncols); ++ fplll::ZZ_mat mat(nrows, ncols); + + for (int i = 0; i < nrows; i++) + for (int j = 0; j < ncols; j++) +@@ -31,21 +31,21 @@ bool fp_LLL(MutableMatrix *M, MutableMat + ring_elem a; + if (M->get_entry(j, i, a)) + { +- mpz_set(mat[i][j].getData(), a.get_mpz()); ++ mpz_set(mat[i][j].get_data(), a.get_mpz()); + } + } + + int result = +- lllReduction(mat, delta, eta, method, floatType, precision, flags); ++ lll_reduction(mat, delta, eta, method, floatType, precision, flags); + + switch (result) + { +- case RED_SUCCESS: ++ case fplll::RED_SUCCESS: + break; +- case RED_BABAI_FAILURE: ++ case fplll::RED_BABAI_FAILURE: + ERROR("Error in fpLLL"); + return 0; +- case RED_LLL_FAILURE: ++ case fplll::RED_LLL_FAILURE: + ERROR("infinite loop in LLL"); + return 0; + default: +@@ -60,7 +60,7 @@ bool fp_LLL(MutableMatrix *M, MutableMat + for (int j = 0; j < ncols; j++) + for (int i = 0; i < nrows; i++) + { +- mpz_set(a, mat[i][j].getData()); ++ mpz_set(a, mat[i][j].get_data()); + ring_elem b = globalZZ->from_int(a); + M->set_entry(j, i, b); + } diff --git a/Macaulay2-1.15-optflags.patch b/Macaulay2-1.15-optflags.patch new file mode 100644 index 0000000..d27c278 --- /dev/null +++ b/Macaulay2-1.15-optflags.patch @@ -0,0 +1,21 @@ +--- M2/configure.ac.orig 2020-05-22 08:58:09.000000000 -0600 ++++ M2/configure.ac 2020-05-28 19:59:37.838647299 -0600 +@@ -308,12 +308,12 @@ fi + ] + + if test "$OPTIMIZE" = yes +-then CFLAGS="$CFLAGS -O2" +- CXXFLAGS="$CXXFLAGS -O2" +- FCFLAGS="$FCFLAGS -O2" +-else CFLAGS="$CFLAGS -O0" +- CXXFLAGS="$CXXFLAGS -O0" +- FCFLAGS="$FCFLAGS -O0" ++then CFLAGS="-O2 $CFLAGS" ++ CXXFLAGS="-O2 $CXXFLAGS" ++ FCFLAGS="-O2 $FCFLAGS" ++else CFLAGS="-O0 $CFLAGS" ++ CXXFLAGS="-O0 $CXXFLAGS" ++ FCFLAGS="-O0 $FCFLAGS" + fi + + AC_SUBST(GCCVERSION) diff --git a/Macaulay2-1.16-default_make_targets.patch b/Macaulay2-1.16-default_make_targets.patch new file mode 100644 index 0000000..1e77bcf --- /dev/null +++ b/Macaulay2-1.16-default_make_targets.patch @@ -0,0 +1,11 @@ +--- M2/Macaulay2/Makefile.in.orig 2020-07-12 19:17:33.241211749 -0600 ++++ M2/Macaulay2/Makefile.in 2020-07-12 19:18:07.133195781 -0600 +@@ -3,7 +3,7 @@ + VPATH = @srcdir@ + include ../include/config.Makefile + all: @pre_docdir@/COPYING-GPL-2 @pre_docdir@/COPYING-GPL-3 @pre_docdir@/README @pre_docdir@/LAYOUT +-SUBDIRS = util regex c d e system bin m2 man packages editors html-check-links tests ++SUBDIRS = util regex c d e system bin m2 man packages editors + + define do-in-subdirs + $(foreach d,$(SUBDIRS), diff --git a/Macaulay2-1.16-format.patch b/Macaulay2-1.16-format.patch new file mode 100644 index 0000000..2ffd3f5 --- /dev/null +++ b/Macaulay2-1.16-format.patch @@ -0,0 +1,11 @@ +--- M2/Macaulay2/e/mem.cpp.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/Macaulay2/e/mem.cpp 2020-07-12 19:26:39.391982818 -0600 +@@ -71,7 +71,7 @@ void stash::text_out(buffer &o) const + { + char s[200]; + sprintf(s, +- "%16s %9dk %9dk %10zd %10lu %10lu %10lu %10lu%s", ++ "%16s %9dk %9dk %10zu %10zu %10zu %10zu %10zu%s", + name, + static_cast((element_size * highwater + 1023) / 1024), + static_cast((element_size * n_inuse + 1023) / 1024), diff --git a/Macaulay2-1.16-no_gftables.patch b/Macaulay2-1.16-no_gftables.patch new file mode 100644 index 0000000..e491a6e --- /dev/null +++ b/Macaulay2-1.16-no_gftables.patch @@ -0,0 +1,11 @@ +--- M2/configure.ac.orig 2020-07-12 19:15:12.986277846 -0600 ++++ M2/configure.ac 2020-07-12 19:19:00.202170774 -0600 +@@ -673,7 +673,7 @@ AC_SUBST(BUILTLIBS) + AC_SUBST(LIBLIST, " atomic_ops gc gdbm gmp mpir mpfr readline ntl flint factory lapack mpsolve frobby glpk cddlib fplll linbox gtest ") + # The list LIBLIST is the list of libraries that might be used and linked into M2. + +-AC_SUBST(PROGLIST, "4ti2 gfan normaliz csdp nauty cddplus lrslib gftables topcom cohomcalg") ++AC_SUBST(PROGLIST, "4ti2 gfan normaliz csdp nauty cddplus lrslib topcom cohomcalg") + # The list PROGLIST is the list of programs and libraries for them that are distributed with M2. + # Initially, we offer no option for not compiling some of them. + diff --git a/Macaulay2-1.16-rightarrow.patch b/Macaulay2-1.16-rightarrow.patch new file mode 100644 index 0000000..1c4abd5 --- /dev/null +++ b/Macaulay2-1.16-rightarrow.patch @@ -0,0 +1,11 @@ +--- M2/Macaulay2/packages/Macaulay2Doc/overview_modules.m2.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/Macaulay2/packages/Macaulay2Doc/overview_modules.m2 2020-07-12 19:27:28.520963206 -0600 +@@ -347,7 +347,7 @@ document { + }, + TEX "Macaulay2 represents each module (at least conceptually) as a subquotient module, that is, a submodule of + a quotient of an ambient free module. A subquotient module is determined by two +- matrices $f : R^m \\rightarrow{} R^n$ and $g : R^p \\rightarrow{} R^n$. ++ matrices $f : R^m \\rightarrow R^n$ and $g : R^p \\rightarrow R^n$. + The {\\em subquotient module} with generators $f$ and relations $g$ is by definition the module + $M = ((image f) + (image g))/(image g)$.", + PARA{}, diff --git a/Macaulay2-1.16-ulimit.patch b/Macaulay2-1.16-ulimit.patch index ad15955..96065a5 100644 --- a/Macaulay2-1.16-ulimit.patch +++ b/Macaulay2-1.16-ulimit.patch @@ -1,9 +1,20 @@ ---- M2/libraries/Makefile.library.in.orig 2024-11-01 04:33:00.000000000 -0600 -+++ M2/libraries/Makefile.library.in 2025-02-18 20:23:38.667139158 -0700 -@@ -254,10 +254,10 @@ ifneq (@DOWNLOAD@,yes) - @ false +--- M2/GNUmakefile.in.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/GNUmakefile.in 2020-07-12 19:24:55.838024149 -0600 +@@ -136,7 +136,7 @@ build-in-$1: submodules/$1/Makefile + $(MAKE) -C submodules/$1 all + check-in-$1: run-configure-in-$1 + ifeq ($(no-check-$1),) +- ulimit -v 1000000 && $(MAKE) -C submodules/$1 check ++ ulimit -v 2000000 && $(MAKE) -C submodules/$1 check endif + install-in-$1: build-in-$1; + $(MAKE) -C submodules/$1 install +--- M2/libraries/Makefile.library.in.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/libraries/Makefile.library.in 2020-07-12 19:20:23.705132772 -0600 +@@ -238,10 +238,10 @@ distclean: package-distclean + clean::; rm -rf .patched* .untarred* $(LIBNAME)* .checked* .compiled* .configured* .installed* .untarred2* diffs tmp $(UNTARDIR) $(OLDUNTARDIR) + distclean: clean ; rm -rf Makefile + -SLIMIT ?= 8192 -TLIMIT ?= 100 -MLIMIT ?= 400000 @@ -15,10 +26,10 @@ LIMIT := : ifeq (@ULIMIT_T@,yes) LIMIT += ; ulimit -t $(TLIMIT) ---- M2/Macaulay2/m2/basictests/Makefile.in.orig 2024-11-01 04:33:00.000000000 -0600 -+++ M2/Macaulay2/m2/basictests/Makefile.in 2025-02-18 20:23:38.667139158 -0700 +--- M2/Macaulay2/m2/basictests/Makefile.in.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/Macaulay2/m2/basictests/Makefile.in 2020-07-12 19:23:46.653051760 -0600 @@ -22,17 +22,17 @@ $(TESTRESULTS) : @pre_exec_prefix@/bin/M - ARGS := --silent -q --stop --no-core -e 'srcdir = "@srcdir@/"' + ARGS := --silent -q --stop --no-setup -e 'srcdir = "@srcdir@/"' ifeq "@DEBUG@" "no" -TLIMIT ?= 20 @@ -42,8 +53,19 @@ LIMIT := ifeq (@ULIMIT_T@,yes) ---- M2/Macaulay2/tests/ComputationsBook/Makefile.chapter.in.orig 2024-11-01 04:33:00.000000000 -0600 -+++ M2/Macaulay2/tests/ComputationsBook/Makefile.chapter.in 2025-02-18 20:23:38.667139158 -0700 +--- M2/Macaulay2/m2/run.m2.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/Macaulay2/m2/run.m2 2020-07-12 19:22:43.157077109 -0600 +@@ -7,7 +7,7 @@ + utest := opt -> ( + cmd := "ulimit " | opt | "; "; + if chkrun("2>/dev/null >/dev/null "|cmd) == 0 then cmd else "") +-ulimit := utest "-c unlimited" | utest "-t 700" | utest "-m 850000" | utest "-s 8192" | utest "-n 512" ++ulimit := utest "-c unlimited" | utest "-t 1400" | utest "-m 1700000" | utest "-s 16384" | utest "-n 512" + + M2statusRegexp := "^--status:" + statusLines := file -> select(lines file, s -> match(M2statusRegexp,s)) +--- M2/Macaulay2/tests/ComputationsBook/Makefile.chapter.in.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/Macaulay2/tests/ComputationsBook/Makefile.chapter.in 2020-07-12 19:20:27.318131329 -0600 @@ -15,16 +15,16 @@ diff: LIMIT := @@ -61,12 +83,12 @@ endif ifeq (@ULIMIT_S@,yes) -LIMIT += ulimit -s 8192 ; -+LIMIT += ulimit -s 16384 ; ++LIMIT += ulimit -s 16834 ; endif ---- M2/Macaulay2/tests/Makefile.test.in.orig 2024-11-01 04:33:00.000000000 -0600 -+++ M2/Macaulay2/tests/Makefile.test.in 2025-02-18 20:23:38.667139158 -0700 +--- M2/Macaulay2/tests/Makefile.test.in.orig 2020-07-11 05:04:29.000000000 -0600 ++++ M2/Macaulay2/tests/Makefile.test.in 2020-07-12 19:20:27.319131328 -0600 @@ -6,18 +6,18 @@ DEFERRED ?= no DOTS ?= ../.. @@ -75,17 +97,15 @@ +TLIMIT ?= 180 # one test doesn't work with only 150MB RAM, ext-total.m2, on a 64 bit intel machine: -MLIMIT ?= 800000 --VLIMIT ?= 2000000 +MLIMIT ?= 1600000 -+VLIMIT ?= 4000000 + VLIMIT ?= 2000000 else # give the debug version more time and space -TLIMIT ?= 140 -MLIMIT ?= 1200000 --VLIMIT ?= 2000000 +TLIMIT ?= 280 +MLIMIT ?= 2400000 -+VLIMIT ?= 4000000 + VLIMIT ?= 2000000 endif # make the stack limit always the same as it would be under MacOS -SLIMIT ?= 8192 diff --git a/Macaulay2-1.18-lto.patch b/Macaulay2-1.18-lto.patch deleted file mode 100644 index becd01c..0000000 --- a/Macaulay2-1.18-lto.patch +++ /dev/null @@ -1,35 +0,0 @@ ---- M2/Macaulay2/c/compat.h.orig 2021-06-13 14:30:17.341325747 -0600 -+++ M2/Macaulay2/c/compat.h 2021-06-14 06:52:52.648631798 -0600 -@@ -2,7 +2,7 @@ - - #ifndef __cplusplus - #undef bool --typedef char bool; -+typedef _Bool bool; - #endif - - extern char posfmt[]; ---- M2/Macaulay2/d/types.h.orig 2021-06-04 17:33:04.000000000 -0600 -+++ M2/Macaulay2/d/types.h 2021-06-13 14:30:27.804335244 -0600 -@@ -37,6 +37,10 @@ - # define LONGJUMP(env) longjmp(env, 1) - #endif - -+#ifdef __cplusplus -+extern "C" { -+#endif -+ - struct ArgCell - { - int argc, envc; -@@ -50,6 +54,10 @@ struct JumpCell - bool is_set; - }; - -+#ifdef __cplusplus -+} -+#endif -+ - #ifdef HAVE_UNISTD_H - #include - #endif diff --git a/Macaulay2-1.25-default_make_targets.patch b/Macaulay2-1.25-default_make_targets.patch deleted file mode 100644 index 3daf8c7..0000000 --- a/Macaulay2-1.25-default_make_targets.patch +++ /dev/null @@ -1,12 +0,0 @@ ---- M2/Macaulay2/Makefile.in.orig 2025-11-14 04:03:48.000000000 -0700 -+++ M2/Macaulay2/Makefile.in 2025-11-14 13:59:26.630241856 -0700 -@@ -3,8 +3,7 @@ - VPATH = @srcdir@ - include ../include/config.Makefile - all: @pre_docdir@/COPYING-GPL-2 @pre_docdir@/COPYING-GPL-3 @pre_docdir@/LAYOUT --SUBDIRS = c d e system bin m2 man packages editors \ -- $(if $(filter html, @DOCUMENTATION@), html-check-links) tests -+SUBDIRS = c d e system bin m2 man packages editors tests - - define do-in-subdirs - $(foreach d,$(SUBDIRS), diff --git a/Macaulay2-1.25-optflags.patch b/Macaulay2-1.25-optflags.patch deleted file mode 100644 index 5c93b1c..0000000 --- a/Macaulay2-1.25-optflags.patch +++ /dev/null @@ -1,42 +0,0 @@ ---- M2/configure.ac.orig 2025-11-14 04:03:48.000000000 -0700 -+++ M2/configure.ac 2025-11-14 13:57:06.905244494 -0700 -@@ -318,12 +318,12 @@ fi - ] - - if test "$OPTIMIZE" = yes --then CFLAGS="$CFLAGS -O2" -- CXXFLAGS="$CXXFLAGS -O2" -- FCFLAGS="$FCFLAGS -O2" --else CFLAGS="$CFLAGS -O0" -- CXXFLAGS="$CXXFLAGS -O0" -- FCFLAGS="$FCFLAGS -O0" -+then CFLAGS="-O2 $CFLAGS" -+ CXXFLAGS="-O2 $CXXFLAGS" -+ FCFLAGS="-O2 $FCFLAGS" -+else CFLAGS="-O0 $CFLAGS" -+ CXXFLAGS="-O0 $CXXFLAGS" -+ FCFLAGS="-O0 $FCFLAGS" - fi - - AC_SUBST(GCCVERSION) ---- M2/libraries/factory/Makefile.in.orig 2025-11-14 04:03:48.000000000 -0700 -+++ M2/libraries/factory/Makefile.in 2025-11-14 13:57:56.926954878 -0700 -@@ -7,7 +7,7 @@ - URL = https://macaulay2.com/Downloads/OtherSourceCode - VERSION = 4.4.1 - PATCHFILE = @abs_srcdir@/patch-$(VERSION) --PRECONFIGURE = autoreconf -vif -+PRECONFIGURE = sed -i 's/-g0 -O3 //' m4/flags.m4 && autoreconf -vif - - BUILDTARGET = all ftmpl_inst.o - LIBRARIES = ftmpl_inst.o ---- M2/libraries/mpfr/Makefile.in.orig 2025-11-14 04:03:48.000000000 -0700 -+++ M2/libraries/mpfr/Makefile.in 2025-11-14 13:57:06.905816340 -0700 -@@ -36,6 +36,7 @@ CONFIGOPTIONS += --disable-shared - # endif - - # PRECONFIGURE = autoreconf -i -+PRECONFIGURE = sed -i '/LDFLAGS/s/ -Wl,--disable-new-dtags//g' configure - include ../Makefile.library - - BUILDOPTIONS += CPPFLAGS="$(CPPFLAGS)" diff --git a/com.macaulay2.macaulay2.desktop b/Macaulay2.desktop similarity index 100% rename from com.macaulay2.macaulay2.desktop rename to Macaulay2.desktop diff --git a/Macaulay2.spec b/Macaulay2.spec index 5d65215..b28494a 100644 --- a/Macaulay2.spec +++ b/Macaulay2.spec @@ -2,26 +2,35 @@ # Macaulay2's memory management scheme requires close cooperation with libgc, # and some of the supporting libraries must be compiled with special options to # accomplish this. In particular, Macaulay2 needs: +# - mathicgb configured --without-tbb # - mpfr configured with --disable-thread-safe # - flint linked with the GC-enabled mpfr # - factory (from Singular) configured with --disable-omalloc --enable-streamio # and linked with the flint that is linked with the GC-enabled mpfr # Since the main Fedora packages are not built in this way, we are forced to -# bundle these packages to avoid random GC-related crashes. +# bundle these packages to avoid random GC-related crashes. The packages +# memtailor and mathic, which sit underneath mathicgb, must also be bundled or +# we get random GC-related crashes for an as yet undiagnosed reason. # -# We have to use the static versions of the libfplll and givaro libraries. -# They have global objects whose constructors run before GC is initialized. -# If we allow the shared libraries to be unloaded, which happens as a normal -# part of Macaulay2's functioning, then GC tries to free objects it did not -# allocate, which leads to a segfault. +# We have to use the static version of the libfplll and givaro library. They +# have global objects whose constructors run before GC is initialized. If we +# allow the shared libraries to be unloaded, which happens as a normal part of +# Macaulay2's functioning, then GC tries to free objects it did not allocate, +# which leads to a segfault. # # We have to bundle the linbox package. It has global constructors that cause # the same problem as libfplll. -%global emacscommit 524968452e95d010769ece30092edaa09d1e814f +# Upstream wants us to build the final commit in a release branch. We wait +# for a release announcement, then pull from git. The tarballs in the git repo +# are for upstream's use, not for distributions to build. +%global commit 94c4b7db5dcafeaf2b97315a2bed6ac8ba16ee6b +%global shortcommit %(cut -b -7 <<< %{commit}) +%global m2url https://github.com/Macaulay2/M2 + +%global emacscommit 7460c448d40571866e8290ac862abbc28c1b5b37 %global emacsurl https://github.com/Macaulay2/M2-emacs %global emacsshort %(cut -b -7 <<< %{emacscommit}) -%global m2url https://github.com/Macaulay2/M2 # Address randomization interferes with Macaulay2's memory management scheme, # and linking with -z now breaks configure. @@ -33,226 +42,153 @@ # use system normaliz %global system_normaliz 1 #endif +# standardize on gmp instead of mpir (mostly for pari/sagemath) +%global gmp 1 %global ISSUE %{?fedora:Fedora-%{fedora}}%{?rhel:RedHatEnterprise-%{rhel}} %global M2_machine %{_target_cpu}-Linux-%{ISSUE} # The examples contain some python files which should not be byte compiled %global _python_bytecompile_extra 0 -# Starting with GCC 12, Macaulay2 segfaults during the build on all -# architectures when LTO is enabled. (With GCC 11, s390x did this, but the -# other architectures did not.) Until somebody can figure out what is going -# on, disable LTO universally. -%define _lto_cflags %{nil} +%if 0%{?fedora} >= 33 +%global blaslib flexiblas +%else +%global blaslib openblas +%endif Summary: System for algebraic geometry and commutative algebra Name: Macaulay2 -Version: 1.25.11 -Release: %autorelease +Version: 1.16 +Release: 1%{?dist} -# GPL-2.0-only OR GPL-3.0-only: -# - the project as a whole -# - factory (bundled) -# GPL-1.0-or-later: -# - Macaulay2/packages/FormalGroupLaws.m2 -# - Macaulay2/packages/WeylGroups.m2 -# GPL-2.0-only: -# - Macaulay2/packages/ModuleDeformations.m2 -# - Macaulay2/packages/QuillenSuslin.m2 -# - Macaulay2/packages/Visualize.m2 -# GPL-2.0-or-later: -# - Macaulay2/e/bibasis -# - Macaulay2/m2/computations.m2 -# - Macaulay2/packages/AlgebraicSplines.m2 -# - Macaulay2/packages/BIBasis.m2 -# - Macaulay2/packages/Binomials.m2 -# - Macaulay2/packages/Chordal.m2 -# - Macaulay2/packages/Cremona.m2 -# - Macaulay2/packages/Cyclotomic.m2 -# - Macaulay2/packages/EdgeIdeals.m2 -# - Macaulay2/packages/FourierMotzkin.m2 -# - Macaulay2/packages/GKMVarieties.m2 -# - Macaulay2/packages/GradedLieAlgebras.m2 -# - Macaulay2/packages/GraphicalModels* -# - Macaulay2/packages/Graphics.m2 -# - Macaulay2/packages/Graphs.m2 -# - Macaulay2/packages/GroebnerWalk.m2 -# - Macaulay2/packages/HyperplaneArrangements.m2 -# - Macaulay2/packages/InvariantRing* -# - Macaulay2/packages/KustinMiller.m2 -# - Macaulay2/packages/LieTypes.m2 -# - Macaulay2/packages/MonomialAlgebras.m2 -# - Macaulay2/packages/MultiprojectiveVarieties.m2 -# - Macaulay2/packages/NAGtypes.m2 -# - Macaulay2/packages/Nauty* -# - Macaulay2/packages/Normaliz.m2 -# - Macaulay2/packages/NumericalAlgebraicGeometry.m2 -# - Macaulay2/packages/PackageCitations.m2 -# - Macaulay2/packages/Posets.m2 -# - Macaulay2/packages/RationalPoints* -# - Macaulay2/packages/ResLengthThree.m2 -# - Macaulay2/packages/ResolutionsOfStanleyReisnerRings.m2 -# - Macaulay2/packages/Resultants.m2 -# - Macaulay2/packages/RunExternalM2.m2 -# - Macaulay2/packages/SLPexpressions.m2 -# - Macaulay2/packages/SLnEquivariantMatrices.m2 -# - Macaulay2/packages/SimplicialDecomposability.m2 -# - Macaulay2/packages/SparseResultants.m2 -# - Macaulay2/packages/SpecialFanoFourfolds.m2 -# - Macaulay2/packages/StatGraphs.m2 -# - Macaulay2/packages/TriangularSets.m2 -# - Macaulay2/packages/VectorFields.m2 -# GPL-3.0-or-later: -# - normaliz, when it is bundled -# - Macaulay2/e/mpreal.h -# - Macaulay2/packages/BettiCharacters.m2 -# - Macaulay2/packages/CodingTheory.m2 -# - Macaulay2/packages/FGLM.m2 -# - Macaulay2/packages/HighestWeights* -# - Macaulay2/packages/Jets.m2 -# - Macaulay2/packages/LocalRings -# - Macaulay2/packages/MonomialIntegerPrograms.m2 -# - Macaulay2/packages/MultiplierIdeals.m2 -# - Macaulay2/packages/NormalToricVarieties.m2 -# - Macaulay2/packages/NumericSolutions.m2 -# - Macaulay2/packages/OldPolyhedra.m2 -# - Macaulay2/packages/OldToricVectorBundles.m2 -# - Macaulay2/packages/PieriMaps.m2 -# - Macaulay2/packages/Polyhedra.m2 -# - Macaulay2/packages/PositivityToricBundles.m2 -# - Macaulay2/packages/SchurRings.m2 -# - Macaulay2/packages/SchurVeronese.m2 -# - Macaulay2/packages/Simplicial* -# - Macaulay2/packages/SpectralSequences.m2 -# - Macaulay2/packages/TensorComplexes.m2 -# - Macaulay2/packages/ToricTopology.m2 -# - Macaulay2/packages/ToricVectorBundles.m2 -# - Macaulay2/packages/VersalDeformations.m2 -# LGPL-2.0-or-later: -# - flint (bundled) -# - linbox (bundled) -# LGPL-3.0-or-later: -# - mpfr (bundled) -# Apache-2.0: -# - Macaulay2/packages/OpenMath.m2 -# - Macaulay2/packages/SCSCP.m2 -# MIT: -# - Macaulay2/packages/Visualize/css -# - Macaulay2/packages/Visualize/js -# MIT AND OFL-1.1-RFN: -# - Macaulay2/packages/Style -# LicenseRef-Fedora-Public-Domain: -# - Macaulay2/e/localring* -# - Macaulay2/e/mutablecomplex* -# - Macaulay2/e/NAG* -# - Macaulay2/e/SLP* -# - Macaulay2/packages/Depth.m2 -# - Macaulay2/packages/Divisor.m2 -# - Macaulay2/packages/FastMinors.m2 -# - Macaulay2/packages/LatticePolytopes.m2 -# - Macaulay2/packages/NoetherNormalization.m2 -# - Macaulay2/packages/RationalMaps.m2 -# - Macaulay2/packages/SectionRing.m2 -License: (GPL-2.0-only OR GPL-3.0-only) AND GPL-1.0-or-later AND GPL-2.0-only AND GPL-2.0-or-later AND GPL-3.0-or-later AND LGPL-2.0-or-later AND LGPL-3.0-or-later AND Apache-2.0 AND MIT AND OFL-1.1-RFN AND LicenseRef-Fedora-Public-Domain -URL: https://macaulay2.com/ -VCS: git:%{m2url}.git +License: GPLv2 or GPLv3 +URL: http://macaulay2.com/ %if 0%{?snap:1} Source0: %{name}-%{version}-%{snap}.tar.xz %else -Source0: %{m2url}/archive/release-%{version}/%{name}-%{version}.tar.gz +Source0: %{m2url}/tarball/%{commit}/%{name}-%{version}.tar.gz %endif Source1: %{emacsurl}/tarball/%{emacscommit}/M2-emacs-%{emacsshort}.tar.gz # Various sizes of the planets icon from macaulay2.com. See README.icons in # the tar file for details on how these icons were created. Source10: Macaulay2-icons.tar.xz -Source11: com.macaulay2.macaulay2.desktop -Source12: com.macaulay2.macaulay2.metainfo.xml +Source11: Macaulay2.desktop Source20: etags.sh ## BUNDLED code # Normaliz must sometimes be bundled due to version differences -%if ! %system_normaliz -%global normalizver 3.11.0 +%global normalizver 3.7.2 Source100: http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/normaliz-%{normalizver}.tar.gz Provides: bundled(normaliz) = %{normalizver} -%endif # MPFR is bundled because it must be built with different threading options -%global mpfrver 4.2.2 -Source101: https://www.mpfr.org/mpfr-%{mpfrver}/mpfr-%{mpfrver}.tar.gz +%global mpfrver 4.1.0 +Source101: http://www.mpfr.org/mpfr-%{mpfrver}/mpfr-%{mpfrver}.tar.xz Provides: bundled(mpfr) = %{mpfrver} # FLINT is bundled because it must be linked with the specially-built MPFR -%global flintver 3.3.1 -Source102: https://github.com/flintlib/flint/archive/v%{flintver}/flint-%{flintver}.tar.gz +%global flintver 2.6.3 +Source102: http://www.flintlib.org/flint-%{flintver}.tar.gz Provides: bundled(flint) = %{flintver} # FACTORY is bundled because it must be built with special options -%global factoryver 4.4.1 -Source103: https://www.singular.uni-kl.de/ftp/pub/Math/Factory/factory-%{factoryver}.tar.gz +%global factoryver 4.1.1 +Source103: http://faculty.math.illinois.edu/Macaulay2/Downloads/OtherSourceCode/factory-%{factoryver}.tar.gz Provides: bundled(factory) = %{factoryver} +# MATHICGB is bundled because it must be built with different threading options +%global mathicgbver 1.0 +%global mathicgbcommit 0d70da731a84008143a00cf1effd978dc8607879 +Source104: https://github.com/Macaulay2/mathicgb/tarball/%{mathicgbcommit}/mathicgb-%{mathicgbver}.tar.gz +Provides: bundled(mathicgb) = %{mathicgbver} + +# GTEST is bundled because MATHICGB refuses to build otherwise +%global gtestver 1.10.0 +Source105: https://faculty.math.illinois.edu/Macaulay2/Downloads/OtherSourceCode/gtest-%{gtestver}.tar.gz + +# MEMTAILOR is bundled because it causes garbage collector crashes otherwise +%global memtailorver 1.0 +%global memtailorcommit 1d13f96bc7d84b7ac401e6b8c936fad26f08786c +Source106: https://github.com/Macaulay2/memtailor/tarball/%{memtailorcommit}/memtailor-%{memtailorver}.tar.gz +Provides: bundled(memtailor) = %{memtailorver} + +# MATHIC is bundled because it causes garbage collector crashes otherwise +%global mathicver 1.0 +%global mathiccommit 44095b846a83c05cbff6f3e8765070e5cda40e67 +Source107: https://github.com/Macaulay2/mathic/tarball/%{mathiccommit}/mathic-%{mathicver}.tar.gz +Provides: bundled(mathic) = %{mathicver} + # LINBOX is bundled because it introduces static global objects -%global linboxver 1.7.1 -Source104: https://github.com/linbox-team/linbox/releases/download/v%{linboxver}/linbox-%{linboxver}.tar.gz +%global linboxver 1.6.3 +Source108: https://github.com/linbox-team/linbox/archive/v%{linboxver}}/linbox-%{linboxver}.tar.gz Provides: bundled(linbox) = %{linboxver} ## PATCHES FOR BUNDLED code -# No patches +# Work around an ambiguous overload on 32-bit platforms +Source200: linbox-1.6.3.patch +# Fix factory build failure. REPLACES the upstream patch. +Source201: factory-4.1.1.patch +# Fix mathicgb build on big endian machines. +Source202: mathicgb-1.0.patch ## FAKE library tarballs that convince Macaulay2 to use the system versions -Source300: frobby_v0.9.5.tar.gz -Source301: cddlib-094m.tar.gz -# lapack -Source302: v3.12.1.tar.gz -Source303: 4ti2-1.6.13.tar.gz -Source304: fplll-5.5.0.tar.gz +Source300: frobby_v0.9.0.tar.gz +Source301: cddlib-094h.tar.gz +Source302: lapack-3.6.0.tgz +Source303: 4ti2-1.6.9.tar.gz +Source304: libfplll-5.2.0.tar.gz Source305: gfan0.6.2.tar.gz -Source306: givaro-4.2.1.tar.gz -Source307: lrslib-073.tar.gz -Source308: TOPCOM-1.1.2.tar.gz +Source306: givaro-4.1.1.tar.gz +Source307: lrslib-062.tar.gz +Source308: TOPCOM-0.17.8.tar.gz Source309: cohomCalg-0.32.tar.gz -Source310: glpk-5.0.tar.gz +Source310: glpk-4.59.tar.gz Source311: Csdp-6.2.0.tgz -Source312: mpsolve-3.2.3.tar.gz -# msolve -%global msolvever 0.9.2 -Source313: v%{msolvever}.tar.gz +Source312: mpsolve-3.2.1.tar.gz # let Fedora optflags override the defaults -Patch: %{name}-1.25-optflags.patch +Patch0: %{name}-1.15-optflags.patch # give the build a little more time and space than upstream permits -Patch: %{name}-1.16-ulimit.patch -# drop checking of html links from default make target -Patch: %{name}-1.25-default_make_targets.patch +Patch1: %{name}-1.16-ulimit.patch +# fix paths to nauty binaries +Patch2: %{name}-1.11-nauty-paths.patch +# drop 'tests' from default make target +Patch3: %{name}-1.16-default_make_targets.patch +# disable check for gftables +Patch4: %{name}-1.16-no_gftables.patch +# adapt to libfplll 5.2.1 +Patch5: %{name}-1.15-fplll.patch # do not override the debug level -Patch: %{name}-1.17-configure.patch -# Fix LTO warnings about mismatched declarations and definitions -Patch: %{name}-1.18-lto.patch +Patch6: %{name}-1.12-configure.patch +# fix some -Wformat warnings +Patch7: %{name}-1.16-format.patch +# Fix "error: in conversion to html, unknown TeX control sequence(s): \rightarrow" +Patch8: %{name}-1.16-rightarrow.patch BuildRequires: 4ti2 -BuildRequires: appstream BuildRequires: autoconf BuildRequires: autoconf-archive BuildRequires: bison BuildRequires: boost-devel +BuildRequires: cddlib-devel BuildRequires: chrpath +%if ! 0%{?system_normaliz} BuildRequires: cmake +%endif BuildRequires: cohomCalg BuildRequires: csdp-tools BuildRequires: desktop-file-utils -BuildRequires: diffutils %if 0%{?fedora} BuildRequires: doxygen-latex %else BuildRequires: doxygen %endif -BuildRequires: e-antic-devel -BuildRequires: eigen3-static # etags BuildRequires: emacs +BuildRequires: expat-devel BuildRequires: factory-gftables +BuildRequires: fflas-ffpack-devel BuildRequires: flex BuildRequires: gawk BuildRequires: gcc-c++ @@ -264,59 +200,47 @@ BuildRequires: gfan BuildRequires: git-core BuildRequires: givaro-static BuildRequires: glpk-devel +%if 0%{?gmp} +BuildRequires: gmp-devel +%else +BuildRequires: mpir-devel +%endif +BuildRequires: gtest-devel BuildRequires: iml-devel BuildRequires: info -BuildRequires: libappstream-glib -BuildRequires: libatomic +BuildRequires: libgfan-devel +BuildRequires: libtool +BuildRequires: libatomic_ops-devel BuildRequires: libfplll-static BuildRequires: libfrobby-devel -BuildRequires: libgfan-devel -BuildRequires: libnormaliz-devel >= 3.10.4 +BuildRequires: libnauty-devel +%if 0%{?system_normaliz} +BuildRequires: libnormaliz-devel >= 3.6.3 +%endif BuildRequires: libtool BuildRequires: lrslib-devel BuildRequires: lrslib-utils -BuildRequires: make +BuildRequires: m4ri-devel +BuildRequires: m4rie-devel +BuildRequires: mariadb-devel BuildRequires: mpsolve-devel -BuildRequires: msolve -BuildRequires: msolve-devel BuildRequires: nauty BuildRequires: normaliz -BuildRequires: ocl-icd-devel +BuildRequires: ntl-devel +BuildRequires: %{blaslib}-devel BuildRequires: pari-devel -BuildRequires: pkgconfig(bdw-gc) >= 8.2.6 -BuildRequires: pkgconfig(cddlib) -BuildRequires: pkgconfig(expat) -BuildRequires: pkgconfig(fflas-ffpack) -BuildRequires: pkgconfig(flexiblas) -BuildRequires: pkgconfig(gmp) -BuildRequires: pkgconfig(gtest) -BuildRequires: pkgconfig(libffi) -BuildRequires: pkgconfig(libmariadb) -BuildRequires: pkgconfig(libnauty) +BuildRequires: pkgconfig(bdw-gc) >= 7.6.2 BuildRequires: pkgconfig(libxml-2.0) -BuildRequires: pkgconfig(m4ri) -BuildRequires: pkgconfig(m4rie) -BuildRequires: pkgconfig(mathic) -BuildRequires: pkgconfig(mathicgb) -BuildRequires: pkgconfig(memtailor) -BuildRequires: pkgconfig(mpfi) BuildRequires: pkgconfig(ncurses) -BuildRequires: pkgconfig(ntl) -BuildRequires: pkgconfig(qd) -BuildRequires: pkgconfig(readline) -BuildRequires: pkgconfig(tbb) -BuildRequires: pkgconfig(tinyxml2) BuildRequires: polymake -BuildRequires: python3-devel -BuildRequires: R -BuildRequires: scip -BuildRequires: texinfo +BuildRequires: python3 +BuildRequires: qd-devel +BuildRequires: readline-devel BuildRequires: time +BuildRequires: tinyxml2-devel BuildRequires: TOPCOM BuildRequires: transfig -%ifarch %{valgrind_arches} BuildRequires: valgrind -%endif Requires: 4ti2 Requires: cohomCalg @@ -327,15 +251,9 @@ Requires: gfan Requires: hicolor-icon-theme Requires: lrslib-utils Requires: nauty -Requires: normaliz Requires: TOPCOM -# M2-help -Requires: xdg-utils - Recommends: mathicgb -Recommends: msolve -Recommends: scip %if 0%{?common} Requires: %{name}-common = %{version}-%{release} @@ -350,11 +268,16 @@ Provides: Macaulay2-emacs = %{version}-%{release} Provides: macaulay2 = %{version}-%{release} -# See https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval -# Macaulay2 takes more than 14 hours to build on ppc64le, more than twice as -# long as the x86_64 build, and it is doubtful that anyone will ever use it on -# that platform anyway. -ExcludeArch: %{ix86} %{power64} +# M2-help +Requires: xdg-utils + +%if 0%{?system_normaliz} +Requires: normaliz +%endif + +# Macaulay2 no longer builds successfully on 32-bit platforms +# https://bugzilla.redhat.com/show_bug.cgi?id=1874318 +ExcludeArch: %{ix86} %{arm} # Do not advertise the bundled mpfr %global __provides_exclude libmpfr.so* @@ -362,8 +285,8 @@ ExcludeArch: %{ix86} %{power64} %description Macaulay 2 is a new software system devoted to supporting research in -algebraic geometry and commutative algebra written by Daniel R. Grayson and -Michael E. Stillman. +algebraic geometry and commutative algebra written by Daniel R. Grayson +and Michael E. Stillman %package common Summary: Common files for %{name} @@ -374,40 +297,44 @@ BuildArch: noarch %prep -%setup -q -n M2-release-%{version}/M2 -%setup -q -n M2-release-%{version}/M2 -T -D -a 10 +%setup -q -n %{name}-M2-%{shortcommit}/M2 +%setup -q -n %{name}-M2-%{shortcommit}/M2 -T -D -a 10 tar -C Macaulay2/editors/emacs --strip-components=1 -xzf %{SOURCE1} install -p -m755 %{SOURCE20} ./etags -## TODO: Remove this when Fedora moves to normaliz 3.11.0 -sed -i 's/3\.11\.0/3.10.5/' libraries/normaliz/Makefile.in - ## bundled code -%if ! %system_normaliz install -p -m644 %{SOURCE100} BUILD/tarfiles/ +%if ! 0%{?system_normaliz} +sed -e '/PROGRAMS =/aPATCHFILE = @abs_srcdir@/patch-$(VERSION)' \ + -e '/PRECONFIGURE/d' \ + -i libraries/normaliz/Makefile.in %endif -install -p -m644 %{SOURCE101} %{SOURCE102} %{SOURCE103} BUILD/tarfiles/ -install -p -m644 %{SOURCE104} BUILD/tarfiles/v%{linboxver}.tar.gz +install -p -m644 %{SOURCE101} %{SOURCE102} %{SOURCE103} %{SOURCE105} \ + %{SOURCE108} BUILD/tarfiles/ sed -i 's/\(VERSION = \).*/\1%{mpfrver}/' libraries/mpfr/Makefile.in sed -e 's/\(VERSION = \).*/\1%{linboxver}/' \ - -e 's,--with-gmp.*,--without-archnative GIVARO_CFLAGS=-I$(LIBRARIESDIR) GIVARO_LIBS="%{_libdir}/libgivaro.a",' \ + -e 's/^#\(PATCHFILE\)/\1/' \ + -e 's,--with-gmp.*,GIVARO_CFLAGS=-I$(LIBRARIESDIR) GIVARO_LIBS="%{_libdir}/libgivaro.a",' \ -i libraries/linbox/Makefile.in +tar -C submodules/mathicgb -xf %{SOURCE104} --strip-components=1 +patch -d submodules/mathicgb -p0 < %{SOURCE202} +tar -C submodules/memtailor -xf %{SOURCE106} --strip-components=1 +tar -C submodules/mathic -xf %{SOURCE107} --strip-components=1 ## patches for bundled code -sed -e 's,--disable-shared,& --disable-arch --with-blas-include=%{_includedir}/flexiblas --with-ntl-include=%{_includedir}/NTL,' \ - -e 's/3\.2\.1/%{flintver}/' \ - -e 's/\(LICENSEFILES = \).*/\1COPYING COPYING.LESSER/' \ - -e 's/-pedantic-errors/& -fno-strict-aliasing/' \ - -e "s,PRECONFIGURE.*,& \&\& sed -i 's/openblas/flexiblas/' configure," \ +sed -e 's,--with-blas,&=%{_includedir}/%{blaslib} --with-ntl,' \ + -e 's,2\.6\.0,%{flintver},' \ -i libraries/flint/Makefile.in +cp -p %{SOURCE200} libraries/linbox/patch-%{linboxver} +cp -p %{SOURCE201} libraries/factory/patch-%{factoryver} ## fake library tarballs install -p -m644 %{SOURCE300} %{SOURCE301} %{SOURCE302} %{SOURCE303} \ %{SOURCE304} %{SOURCE305} %{SOURCE306} %{SOURCE307} %{SOURCE308} \ - %{SOURCE309} %{SOURCE310} %{SOURCE311} %{SOURCE312} %{SOURCE313} \ - BUILD/tarfiles/ + %{SOURCE309} %{SOURCE310} %{SOURCE311} %{SOURCE312} BUILD/tarfiles/ sed -i '/PRECONFIGURE/d' libraries/{4ti2,cddlib,givaro,normaliz,topcom}/Makefile.in +sed -i 's/VERSION = 4\.0\.4/VERSION = 5.2.0/;/PATCHFILE/d' libraries/fplll/Makefile.in sed -i '/PATCHFILE/d' libraries/{csdp,frobby,gfan,givaro,mpsolve,normaliz,topcom}/Makefile.in sed -i '/INSTALLCMD/,/stdinc/d' libraries/frobby/Makefile.in sed -i 's,install \(lib.*\.a\),ln -s %{_libdir}/\1,' libraries/lapack/Makefile.in @@ -415,13 +342,20 @@ sed -i 's,install \(lib.*\.a\),ln -s %{_libdir}/\1,' libraries/lapack/Makefile.i ## fake givaro submodule tar -C submodules/givaro --strip-components=1 -xzf %{SOURCE306} -## flint submodule -tar -C submodules/flint --strip-components=1 -xzf %{SOURCE102} +%patch0 -p1 -b .optflags +%patch1 -p1 -b .ulimit +%patch2 -p1 -b .nauty +%patch3 -p1 -b .default_make_targets +%patch4 -p1 -b .no_gftables +# factory-gftables symlink +mkdir -p BUILD/%{_target_platform}/usr-dist/common/share/Macaulay2/Core +ln -s %{_datadir}/factory \ + BUILD/%{_target_platform}/usr-dist/common/share/Macaulay2/Core/factory +%patch5 -p1 -b .fplll +%patch6 -p1 -b .configure +%patch7 -p1 -b .format +%patch8 -p1 -b .rightarrow -%autopatch -p1 - - -%conf # repeatable builds: inject a node name sed -i 's,`uname -n`,build.fedoraproject.org,' configure.ac @@ -431,67 +365,70 @@ if [ "$HOME" = "/builddir" ]; then fi # Use, but don't build, cddlib, fflas-ffpack, and gc. Use the static versions -# of libfplll and givaro. Link with flexiblas instead of the reference blas -# and lapack. Fix typos. -sed -e 's/BUILD_cddlib=yes/BUILD_cddlib=no/' \ - -e 's/BUILD_gc=yes/BUILD_gc=no/' \ +# of libfplll and givaro. Do not invoke git on a nonrepository. Link with +# blaslib instead of the reference blas and lapack. Fix typos. +sed -e 's/^BUILD_cddlib=yes/BUILD_cddlib=no/' \ + -e 's/^BUILD_gc=yes/BUILD_gc=no/' \ -e 's/BUILD_fflas_ffpack=yes/BUILD_fflas_ffpack=no/' \ + -e 's/^\(GIT_DESCRIPTION=\).*/\1"unknown"/' \ -e 's,-lfplll,%{_libdir}/libfplll.a -lqd,' \ -e 's,`\$PKG_CONFIG --libs givaro`,%{_libdir}/libgivaro.a,' \ -e 's,-lgivaro,%{_libdir}/libgivaro.a,' \ - -e 's,-lrefblas,-lflexiblas,' \ - -e 's,-llapack,-lflexiblas,' \ + -e 's,-llapack -lrefblas,-l%{blaslib},' \ -e 's,\$added_fclibs != yes,"$added_fclibs" != yes,' \ -i configure.ac -# Do not try to download tarballs -sed -i '/^fetch: download-enabled/d' libraries/Makefile.library.in - -# Do not try to fetch sources with git -sed -i 's/^\(fetch:\) update-submodule/\1/' libraries/Makefile.library.in - -# All examples should produce expected results on x86_64. Other platforms -# sometimes encounter problems; e.g., due to differences in rounding error of -# floating point numbers. -%ifnarch %{x86_64} -sed -e '/^IgnoreExampleErrors/s/false/true/' \ - -e '/^CheckDocumentation/s/true/false/' \ - -i Macaulay2/packages/Makefile.in -%endif - # (re)generate configure autoreconf -fi . %build -# Let the configure script find lrslib utilities -module load lrslib-%{_arch} +# This package has a configure test which compiles code and expects it to +# behave in a very specific way (__builtin_return_address). LTO changs the +# behavior and the configure test does not know how to handle it. +# Until the configure script is fixed this seems like the best thing to do +# Disable LTO +%define _lto_cflags %{nil} ## configure macro currently broken, due to some odd prefix-checks. probably fixable -- Rex mkdir -p BUILD/%{_target_platform} -cd BUILD/%{_target_platform} -CPPFLAGS="$CPPFLAGS -I%{_includedir}/cddlib -I%{_includedir}/frobby" \ -CFLAGS='%{build_cflags} -fsigned-char' \ -CXXFLAGS='%{build_cflags} -fsigned-char' \ -LIBS="-lflexiblas" \ +pushd BUILD/%{_target_platform} +# On ppc64le with the compiler in strict mode, the pari declaration of +# vec_insert() is deemed to ambiguate the declaration of the AltiVec function +# __builtin_vec_insert(). We add -fpermissive to downgrade the error to a +# warning, but we should find a better fix. +%ifarch ppc64le +cxxflags="%{optflags} -fsigned-char -fpermissive" +%else +cxxflags="%{optflags} -fsigned-char" +%endif +CPPFLAGS="-I%{_includedir}/cddlib -I%{_includedir}/frobby" \ +CFLAGS="%{optflags} -fsigned-char" \ +CXXFLAGS="$cxxflags" \ +LIBS="-l%{blaslib}" \ ../../configure \ --build=%{_build} \ --host=%{_host} \ --with-issue=%{ISSUE} \ --prefix=%{_prefix} \ + --disable-dumpdata \ --enable-shared \ + --disable-fc-lib-ldflags \ --disable-strip \ + --enable-fplll \ --enable-linbox \ - --with-blas=flexiblas \ - --with-lapack=flexiblas \ - --with-system-libs \ +%if 0%{?gmp} + --with-integer-package=gmp \ +%else + --with-integer-package=mpir \ +%endif --with-unbuilt-programs="cddplus nauty" \ - --enable-build-libraries="mpfr flint factory lapack fplll givaro linbox" + --enable-build-libraries="mpfr flint factory lapack fplll givaro linbox gtest" # The list of libraries and submodules above should include only those that: # 1. We bundle (mpfr, flint, factory, and linbox) - # 2. We sneakily substitute one library for another (lapack -> flexiblas) + # 2. We sneakily substitute one library for another (lapack -> blaslib) # 3. Have to be linked with the static library (fplll and givaro) -cd - +popd # link with static libraries when global constructors run prior to GC # initialization. Otherwise, unloading the shared object causes a crash. @@ -505,11 +442,6 @@ for fil in $(grep -Erl -e '-lfplll|-lgivaro' .); do rm -f $fil.orig done -# Do not try to checkout submodules with git -mkdir -p BUILD/%{_target_platform}/libraries/{flint,givaro} -touch BUILD/%{_target_platform}/libraries/{flint,givaro}/.submodule-updated - -# Build make -C BUILD/%{_target_platform} VERBOSE=true Verbose=true IgnoreExampleErrors=true # log errors @@ -517,7 +449,7 @@ find BUILD/%{_target_platform}/ -name *.errors -execdir echo {} \; -execdir cat %install -%make_install -C BUILD/%{_target_platform} IgnoreExampleErrors=true +make install -C BUILD/%{_target_platform} DESTDIR=%{buildroot} IgnoreExampleErrors=true # link, don't copy, the binaries mbindir=%{buildroot}%{_libexecdir}/Macaulay2/bin @@ -530,10 +462,6 @@ for fil in checkregularity chiro2circuits chiro2cocircuits cohomcalg csdp lrs \ ln -s %{_bindir}/$fil $mbindir/$fil done -# unbundle factory-gftables -rm -fr %{buildroot}%{_datadir}/Macaulay2/Core/factory -ln -s ../../factory %{buildroot}%{_datadir}/Macaulay2/Core - # app img for sz in 64 72 96 128 192 256 512; do sz2=${sz}x${sz} @@ -546,33 +474,26 @@ desktop-file-install --vendor="" \ --dir=%{buildroot}%{_datadir}/applications \ %{SOURCE11} -mkdir -p %{buildroot}%{_metainfodir} -install -pm 644 %{SOURCE12} %{buildroot}%{_metainfodir} -# Still required by guidelines for now -# (https://pagure.io/packaging-committee/issue/1053): -appstream-util validate-relax --nonet \ - %{buildroot}%{_metainfodir}/com.macaulay2.macaulay2.metainfo.xml -# Matches what gnome-software and others use: -appstreamcli validate --no-net --explain \ - %{buildroot}%{_metainfodir}/com.macaulay2.macaulay2.metainfo.xml - # Byte compile the Emacs files, and move the documentation -cd %{buildroot}%{_emacs_sitelispdir}/macaulay2 +pushd %{buildroot}%{_emacs_sitelispdir}/%{name} mv M2-emacs* %{buildroot}%{_pkgdocdir} mv README.md %{buildroot}%{_pkgdocdir}/README-emacs.md %{_emacs_bytecompile} *.el -cd - +popd ## unpackaged files # info dir rm -fv %{buildroot}%{_infodir}/dir +# Delete misinstalled memtailor, mathic, and mathicgb libraries +rm -fr %{buildroot}/builddir + %check -# The test suite has grown to the point where it takes many hours to run. -# Just run the most basic tests. -make check -C BUILD/%{_target_platform}/Macaulay2/e -make check -C BUILD/%{_target_platform}/Macaulay2/bin +CFLAGS="%{optflags}" \ +CXXFLAGS="%{optflags}" \ +LDFLAGS="$RPM_LD_FLAGS" \ +time make -k check -C BUILD/%{_target_platform} Verbose=true ||: %files @@ -585,14 +506,537 @@ make check -C BUILD/%{_target_platform}/Macaulay2/bin %files common %endif %{_datadir}/Macaulay2/ -%{_datadir}/applications/com.macaulay2.macaulay2.desktop +%{_datadir}/applications/*Macaulay2.desktop %{_datadir}/icons/hicolor/*/*/* -%{_metainfodir}/com.macaulay2.macaulay2.metainfo.xml %{_docdir}/Macaulay2/ %{_infodir}/*.info* %{_mandir}/man1/* -%{_emacs_sitelispdir}/macaulay2/ +%{_emacs_sitelispdir}/%{name}/ %changelog -%autochangelog +* Mon Aug 31 2020 Jerry James - 1.16-1 +- Version 1.16 +- Drop upstreamed patch: -xdg_open +- Add -ulimit patch for the slower builders +- Add -format and -rightarrow patches +- Bundle packages due to garbage collector crashes: linbox, memtailor, mathic +- Drop the XEmacs subpackage; XEmacs support no longer works + +* Sun Aug 16 2020 Iñaki Úcar - 1.15.1.0-5 +- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager + +* Sat Aug 01 2020 Fedora Release Engineering - 1.15.1.0-4 +- Second attempt - Rebuilt for + https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Mon Jul 27 2020 Fedora Release Engineering - 1.15.1.0-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Wed Jul 1 2020 Jeff Law - 1.15.1.0-2 +- Disable LTO + +* Wed Jun 3 2020 Jerry James - 1.15.1.0-1 +- Version 1.15.1.0 +- Drop upstreamed patches: -no_Werror, -mpir, -pthreads, -fflas-ffpack, + -fno-common, -gtest, -pthreads + +* Tue Feb 11 2020 Jerry James - 1.14.0.1-4 +- Add -fno-common patch to fix FTBFS with GCC 10 + +* Tue Jan 28 2020 Fedora Release Engineering - 1.14.0.1-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + +* Fri Jan 10 2020 Jerry James - 1.14.0.1-3 +- Rebuild for ntl 11.4.3 + +* Fri Nov 1 2019 Jerry James - 1.14.0.1-2 +- Rebuild for givaro 4.1.1, fflas-ffpack 2.4.3, and linbox 1.6.3 + +* Thu Sep 26 2019 Jerry James - 1.14.0.1-1 +- Macaulay2-1.14.0.1 +- Drop upstreamed -format and -exception patches +- Also bundle libmpc since it is linked with mpfr +- Drop fix for F26 symlink-file snafu +- Build with python 3 instead of python 2 + +* Wed Jul 24 2019 Fedora Release Engineering - 1.12.0.1-6 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild + +* Sun Feb 17 2019 Igor Gnatenko - 1.12.0.1-5 +- Rebuild for readline 8.0 + +* Thu Jan 31 2019 Fedora Release Engineering - 1.12.0.1-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + +* Tue Nov 20 2018 Jerry James - 1.12.0.1-3 +- Rebuild for lrslib 070 + +* Wed Oct 10 2018 Jerry James - 1.12.0.1-2 +- Rebuild for ntl 11.3.0 +- Build with openblas instead of atlas (bz 1618938) + +* Fri Aug 10 2018 Jerry James - 1.12.0.1-1 +- Macaulay2-1.12.0.1 +- Replace tiny icon of unknown origin with various sizes of upstream's icon +- Remove deprecated entries from the desktop file +- Add upstream mpfr 3.1.6 patches + +* Thu Jul 12 2018 Fedora Release Engineering - 1.11-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + +* Tue Jul 3 2018 Jerry James - 1.11-2 +- Rebuild for ntl 11.1.0 +- Remove scriptlets that call install-info +- Do not byte compile python files in the examples + +* Sat Jun 2 2018 Jerry James - 1.11-1 +- Macaulay2-1.11 +- Drop upstreamed patches: -verbose_build, -givaro, -pari, -endian +- New patches: -fflas-ffpack, -format, -exception, -fplll, -configure +- Update bundled software +- Refresh INFO_FILES list + +* Fri Feb 09 2018 Igor Gnatenko - 1.9.2-8 +- Escape macros in %%changelog + +* Wed Feb 07 2018 Fedora Release Engineering - 1.9.2-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + +* Thu Jan 18 2018 Igor Gnatenko - 1.9.2-6 +- Remove obsolete scriptlets + +* Wed Oct 11 2017 Jerry James - 1.9.2-5 +- Link rather than copy the normaliz binary +- Fix accidental replacement of factory symlink with a directory + +* Sat Sep 30 2017 Jerry James - 1.9.2-4 +- Rebuild for ntl 10.5.0 + +* Wed Aug 02 2017 Fedora Release Engineering - 1.9.2-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Wed Jul 26 2017 Fedora Release Engineering - 1.9.2-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Wed Apr 5 2017 Jerry James - 1.9.2-1 +- Macaulay2-1.9.2 +- Drop upstreamed patches: -disable_broken_debug_functions, -gc, -rpath, + -rh_configure_hack +- Add patches: -givaro, -gtest, -pari +- Create fake library and submodule tarballs to fool the build system into + building in support for system libraries +- Bundle mpfr, flint, and factory to avoid garbage collector crashes +- Replace the (X)Emacs triggers with (x)emacs-filesystem dependencies +- New URLs + +* Fri Feb 10 2017 Fedora Release Engineering - 1.6-34 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild + +* Thu Jan 12 2017 Igor Gnatenko - 1.6-33 +- Rebuild for readline 7.x + +* Thu Oct 20 2016 Jerry James - 1.6-32 +- Rebuild for ntl 10.1.0 + +* Mon Sep 5 2016 Jerry James - 1.6-31 +- Rebuild for ntl 9.11.0 + +* Fri Aug 12 2016 Jerry James - 1.6-30 +- Rebuild for fflas-ffpack 2.2.2, givaro 4.0.2, and linbox 1.4.2 + +* Mon Jul 25 2016 Jerry James - 1.6-29 +- Rebuild for ntl 9.10.0 + +* Thu Jun 2 2016 Jerry James - 1.6-28 +- Rebuild for ntl 9.9.1 + +* Fri Apr 29 2016 Jerry James - 1.6-27 +- Rebuild for ntl 9.8.0 +- Nauty is now available +- Drop -gcc-template-bug patch; gcc bug has been fixed + +* Sat Mar 19 2016 Jerry James - 1.6-26 +- Rebuild for ntl 9.7.0 + +* Sat Feb 20 2016 Jerry James - 1.6-25 +- Rebuild for ntl 9.6.4 +- Add -gcc-template-bug patch to work around gcc bug (bz 1307282) + +* Wed Feb 03 2016 Fedora Release Engineering - 1.6-24 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + +* Thu Jan 14 2016 Jonathan Wakely - 1.6-23 +- Rebuilt for Boost 1.60 + +* Fri Dec 4 2015 Jerry James - 1.6-22 +- Rebuild for ntl 9.6.2 +- Add python2 BR for the tests + +* Sat Oct 17 2015 Kalev Lember - 1.6-21 +- Rebuilt for libntl soname bump + +* Fri Oct 16 2015 Jerry James - 1.6-20 +- Rebuild for ntl 9.4.0 + +* Tue Sep 29 2015 Rex Dieter 1.6-19 +- refresh config.guess/config.sub hack, fix FTBFS on aarch64 + +* Sat Sep 19 2015 Jerry James - 1.6-18 +- Rebuild for flint 2.5.2 and ntl 9.3.0 + +* Thu Aug 27 2015 Jonathan Wakely - 1.6-17 +- Rebuilt for Boost 1.59 + +* Wed Jul 29 2015 Fedora Release Engineering - 1.6-16 +- Rebuilt for https://fedoraproject.org/wiki/Changes/F23Boost159 + +* Wed Jul 22 2015 David Tardon - 1.6-15 +- rebuild for Boost 1.58 + +* Tue Jun 16 2015 Fedora Release Engineering - 1.6-14 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + +* Mon May 18 2015 Jerry James - 1.6-13 +- Rebuild for ntl 9.1.1 and cddlib-094h + +* Fri May 15 2015 Jerry James - 1.6-12 +- Bump and rebuild + +* Sat May 9 2015 Jerry James - 1.6-11 +- Rebuild for ntl 9.1.0 + +* Mon Feb 2 2015 Jerry James - 1.6-10 +- Rebuild for ntl 8.1.2 + +* Mon Jan 26 2015 Petr Machata - 1.6-9 +- Rebuild for boost 1.57.0 + +* Thu Jan 15 2015 Jerry James - 1.6-8 +- Rebuild for ntl 8.1.0 +- Fix the desktop file name + +* Wed Oct 29 2014 Jerry James - 1.6-7 +- Rebuild for ntl 6.2.1 +- Revert Apr 8 HTML creation timeout, now handled upstream +- Revert use of -common subpkg; various arches timeout differently + +* Wed Sep 24 2014 Rex Dieter 1.6-6 +- enable -common subpkg (to be more compatible with upstream packaging) + +* Fri Aug 15 2014 Fedora Release Engineering - 1.6-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + +* Wed Jun 25 2014 Rex Dieter 1.6-4 +- restore --build/--host configure options lost in 1.6 update, should help arm + +* Fri Jun 06 2014 Fedora Release Engineering - 1.6-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild + +* Fri May 23 2014 Petr Machata - 1.6-2 +- Rebuild for boost 1.55.0 + +* Mon May 19 2014 Rex Dieter 1.6-1 +- Macaulay2-1.6 (#1074594) +- ExcludeArch: %%arm (#1099598) + +* Wed May 14 2014 Rex Dieter 1.5-8 +- rebuild (gc) + +* Tue Apr 8 2014 Jerry James - 1.5-7 +- Build for all arches +- Increase HTML creation timeouts for slower processors, such as ARM +- Add --build and --host invocations to configure to fix mismatched ARM names + +* Wed Apr 2 2014 Jerry James - 1.5-6 +- Rebuild for ntl 6.1.0 + +* Fri Mar 21 2014 Jerry James - 1.5-5 +- The normaliz patch was used; bring it back +- Complete the removal of the system_normaliz variable +- Link with RPM_LD_FLAGS +- Due to use of a static library, explicitly link with -lflint + +* Fri Jan 24 2014 Rex Dieter - 1.5-5 +- drop unused patches (4ti2, normalize) + +* Tue Jan 21 2014 Rex Dieter - 1.5-4 +- utilize %%_libexecdir/Macaulay2/... for helper/system binaries +- libdir: %%_libdir => %%_prefix/lib +- -common subpkg option (not used yet) + +* Tue Jan 14 2014 Jerry James - 1.5-3 +- Update normaliz interface for normaliz 2.8 and later + +* Tue Jul 30 2013 Petr Machata - 1.5-2 +- Rebuild for boost 1.54.0 + +* Thu May 23 2013 Rex Dieter 1.5-1 +- Release: 1 (using non-snapshot release tarball now) + +* Tue May 21 2013 Rex Dieter - 1.5-0.7.20130401 +- update to 20130401 r15955 snapshot release +- (Build)Requires: factory-gftables (see bug #965655) +- refresh INFO_FILES content + +* Mon May 6 2013 Jerry James - 1.5-0.6.20130214 +- Rebuild for m4ri 20130416 + +* Fri Feb 15 2013 Rex Dieter 1.5-0.5.20130214 +- r15838 (20130214 snapshot) + +* Wed Feb 13 2013 Rex Dieter 1.5-0.4.20120807 +- BR: doxygen-latex + +* Wed Feb 13 2013 Fedora Release Engineering - 1.5-0.3.20120807 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild + +* Tue Aug 07 2012 Rex Dieter 1.5-0.2.20120807 +- 1.5 20120807 r15022 snapshot + +* Thu Jul 19 2012 Rex Dieter 1.4-9 +- rebuild against (Singular's) libfac/factory 3.1.3 + +* Wed Jul 18 2012 Fedora Release Engineering - 1.4-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild + +* Tue Jul 03 2012 Rex Dieter 1.4-7 +- rebuild (pari) + +* Sun Jul 1 2012 pcpa - 1.4-6 +- Link to gmp not mpir. +- Rebuild with pari 2.5. + +* Wed May 30 2012 Rex Dieter +- 1.4-5 +- License: GPLv2 or GPLv3 (#821036) +- pkgconfig-style deps + +* Tue Feb 28 2012 Fedora Release Engineering - 1.4-4 +- Rebuilt for c++ ABI breakage + +* Thu Jan 12 2012 Fedora Release Engineering - 1.4-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild + +* Fri Sep 30 2011 Rex Dieter 1.4-2 +- rebuild (gdbm) + +* Thu May 26 2011 Rex Dieter 1.4-1 +- 1.4 + +* Thu May 26 2011 Rex Dieter 1.3.1-9 +- Typo in INFO_FILES (#708086) + +* Mon Feb 07 2011 Fedora Release Engineering - 1.3.1-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild + +* Wed Jun 30 2010 Rex Dieter - 1.3.1-7 +- BR: cddlib-static (#609698) + +* Tue Mar 16 2010 Rex Dieter - 1.3.1-6 +- rebuild (factory/libfac) + +* Tue Mar 16 2010 Mark Chappell - 1.3.1-5 +- Run install-info on all of the .info files we installed +- Re-enable the now functional ppc64 build + +* Wed Mar 10 2010 Mark Chappell - 1.3.1-4 +- Add in missing Requires runtime dependancies + +* Wed Mar 10 2010 Mark Chappell - 1.3.1-3 +- GPLv3/GPLv2 conflict, use compat-readline5 - bz#511299 + +* Tue Mar 09 2010 Mark Chappell - 1.3.1-2 +- Replace DSO patch with one accepted upstream +- Completely disable static linking + +* Wed Feb 24 2010 Mark Chappell - 1.3.1-1 +- Upstream version increment +- Remove unused patch +- Remove patch applied upstream +- Ensure consistent use of buildroot macro instead of RPM_BUILD_ROOT +- Fix implicit linking DSO failure +- Don't package empty .okay files which simply indicate test passes + +* Tue Dec 8 2009 Michael Schwendt - 1.2-7 +- Explicitly BR factory-static and libfac-static in accordance with the + Packaging Guidelines (factory-devel/libfac-devel are still static-only). + +* Tue Sep 22 2009 Rex Dieter - 1.2-6 +- fixup/optimize scriplets + +* Fri Jul 24 2009 Fedora Release Engineering - 1.2-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild + +* Fri Apr 17 2009 Rex Dieter - 1.2-4 +- rebuild for ntl-devel (shared) + +* Wed Feb 25 2009 Rex Dieter - 1.2-3 +- BR: libfac-devel,factory-devel >= 3.1 +- restore ExcludeArch: ppc64 (#253847) + +* Mon Feb 23 2009 Fedora Release Engineering - 1.2-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild + +* Fri Feb 13 2009 Rex Dieter 1.2-1 +- Macaulay-1.2 + +* Thu Oct 02 2008 Rex Dieter 1.1-2 +- respin (factory/libfac) + +* Tue Mar 11 2008 Rex Dieter 1.1-1 +- Macaulay2-1.1 +- Obsoletes/Provides: Macaulay2-common (upstream compatibility) +- re-enable ppc64 (#253847) +- IgnoreExampleErrors=true + +* Tue Feb 19 2008 Fedora Release Engineering - 0.9.95-10 +- Autorebuild for GCC 4.3 + +* Tue Dec 18 2007 Rex Dieter 0.9.95-9 +- Provides: macaulay2 +- respin against new(er) factory,libfac,ntl + +* Wed Aug 22 2007 Rex Dieter 0.9.95-8 +- ExcludeArch: ppc64 (#253847) + +* Tue Aug 21 2007 Rex Dieter 0.9.95-7 +- BR: gawk + +* Tue Aug 21 2007 Rex Dieter 0.9.95-6 +- gc-7.0 patches + +* Sat Aug 11 2007 Rex Dieter 0.9.95-5 +- License: GPLv2 + +* Mon Jan 15 2007 Rex Dieter 0.9.95-4 +- Ob/Pr: Macaulay2-doc, not -docs (#222609) + +* Sat Jan 06 2007 Rex Dieter 0.9.95-3 +- re-enable ppc build (#201739) + +* Tue Jan 02 2007 Rex Dieter 0.9.95-2 +- ./configure --disable-strip, for usable -debuginfo (#220893) + +* Mon Dec 18 2006 Rex Dieter 0.9.95-1 +- Macaulay2-0.9.95 + +* Wed Nov 22 2006 Rex Dieter 0.9.20-0.5.20060808svn +- .desktop Categories: -Application,Scientific,X-Fedora +ConsoleOnly + +* Tue Aug 29 2006 Rex Dieter 0.9.20-0.4.20060808svn +- fc6 respin + +* Tue Aug 08 2006 Rex Dieter 0.9.20-0.3.20060808svn +- ExcludeArch: ppc (bug #201739) +- %%ghost (x)emacs site-lisp bits (using hints from fedora-rpmdevtools) + +* Tue Aug 08 2006 Rex Dieter 0.9.20-0.2.20060808svn +- 20060808 snapshot + +* Mon Jul 24 2006 Rex Dieter 0.9.20-0.1.20060724svn +- 2006-07-15-0.9.20 + +* Wed Jul 12 2006 Rex Dieter 0.9.10-0.6.20060710svn +- 0.9.10 + +-* Mon Jul 10 2006 Rex Dieter 0.9.8-0.6.cvs20060327 +- BR: ncurses-devel + +* Fri May 05 2006 Rex Dieter 0.9.8-0.4.cvs20060327 +- 64bit patch (#188709) + +* Wed Apr 12 2006 Rex Dieter 0.9.8-0.3.cvs20060327 +- omit x86_64, for now (#188709) + +* Tue Apr 11 2006 Rex Dieter 0.9.8-0.2.cvs20060327 +- 0.9.8 (cvs, no tarball yet) +- drop -doc subpkg (in main now) + +* Mon Apr 10 2006 Rex Dieter 0.9.2-22 +- fix icon location (#188384) + +* Thu Mar 30 2006 Rex Dieter 0.9.2-21 +- really disable %%check (fails on fc5+ anyway) + +* Fri Jan 20 2006 Rex Dieter 0.9.2-20 +- .desktop: drop Category=Development +- app icon: follow icon spec +- drop -emacs subpkg (in main now) + +* Fri Sep 16 2005 Rex Dieter - 0.9.2-19 +- disable 'make check' (fc5/buildsystem error), besides, we get a + good consistency check when M2 builds all the doc examples. + +* Wed Sep 14 2005 Rex Dieter - 0.9.2-18 +- rebuild against gc-6.6 + +* Thu May 26 2005 Michael Schwendt - 0.9.2-17 +- rebuild (build system x86_64 repository access failed for 0.9.2-16) +- fix build for GCC 4 (#156223) + +* Thu Apr 7 2005 Michael Schwendt - 0.9.2-15 +- rebuilt + +* Mon Feb 21 2005 Rex Dieter 0:0.9.2-14 +- x86_64 issues (%%_libdir -> %%_prefix/lib ) +- remove desktop_file macro usage + +* Sat Oct 23 2004 Rex Dieter 0:0.9.2-0.fdr.13 +- BR: time (again) +- omit m2_dir/setup (not needed/wanted) + +* Mon Oct 18 2004 Rex Dieter 0:0.9.2-0.fdr.12 +- actually *apply* gcc34 patch this time. + +* Mon Oct 18 2004 Rex Dieter 0:0.9.2-0.fdr.11 +- gcc34 patch + +* Fri Oct 1 2004 Rex Dieter 0:0.9.2-0.fdr.10 +- explicit BR versions for gc-devel, libfac-devel, factory-devel + +* Tue Aug 10 2004 Rex Dieter 0:0.9.2-0.fdr.9 +- BR: time + +* Thu Jun 03 2004 Rex Dieter 0:0.9.2-0.fdr.8 +- .desktop: remove Terminaloptions to be desktop agnostic +- .desktop: Categories += Education;Math;Development (Devel only + added so it shows *somewhere* in gnome menus) + +* Tue Jun 01 2004 Rex Dieter 0:0.9.2-0.fdr.7 +- disable default 'make check' (util/screen fails on fc2) + +* Tue Mar 30 2004 Rex Dieter 0:0.9.2-0.fdr.6 +- desktop-file is now on by default +- use separate (not inline) .desktop file + +* Mon Jan 05 2004 Rex Dieter 0:0.9.2-0.fdr.5 +- fix BuildRequires: desktop-file-utils to satisfy rpmlint. +- put emacs files in emacs subdir too (to follow supplied docs) +- *really* nuke .cvsignore files +- fix desktop-file-install --add-cateagories usage + +* Tue Dec 23 2003 Rex Dieter 0:0.9.2-0.fdr.4 +- -emacs: use %%defattr +- -emacs: fix M2-init.el + +* Mon Nov 17 2003 Rex Dieter 0:0.9.2-0.fdr.3 +- update/simplify macros +- desktop_file support. +- emacs subpkg. +- relax Req's on subpkgs to just: Requires: %%name = %%epoch:%%version +- use non-versioned BuildRequires +- remove redundant BuildRequires: gmp-devel +- remove gc patch, no longer needed. +- delete/not-package a bunch of unuseful files. +- use --disable-strip when debug_package is in use. + +* Thu Nov 13 2003 Rex Dieter 0:0.9.2-0.fdr.2 +- no longer explictly Requires: emacs + +* Wed Nov 05 2003 Rex Dieter 0:0.9.2-0.fdr.1 +- missing Epoch: 0 + +* Fri Sep 12 2003 Rex Dieter 0.9.2-0.fdr.0 +- fedora'ize + diff --git a/README.md b/README.md deleted file mode 100644 index 7d3e139..0000000 --- a/README.md +++ /dev/null @@ -1,7 +0,0 @@ -# Macaulay2 - -[Macaulay2](http://macaulay2.com/) is a system for computing in commutative -algebra, algebraic geometry and related fields. The system was originally -written by Dan Grayson and Mike Stillman. David Eisenbud joined the project a -number of years ago, and many users are writing packages for the system, and -some are contributing source code. diff --git a/changelog b/changelog deleted file mode 100644 index f52a894..0000000 --- a/changelog +++ /dev/null @@ -1,682 +0,0 @@ -* Mon Oct 13 2025 Jerry James - 1.25.06-4 -- Drop unused atomic_ops dependency - -* Wed Oct 08 2025 Terje Rosten - 1.25.06-4 -- Move to C++17 for gtest 1.17.0 - -* Sat Aug 23 2025 Benjamin A. Beasley - 1.25.06-3 -- Rebuilt for tinyxml2 11.0.0 - -* Wed Aug 20 2025 Jerry James - 1.25.06-2 -- Rebuild for tbb 2022.2.0 - -* Fri Aug 08 2025 Jerry James - 1.25.06-1 -- Version 1.25.06 - -* Wed Jul 23 2025 Fedora Release Engineering - 1.25.05-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild - -* Fri Jun 13 2025 Jerry James - 1.25.05-4 -- Unbundle factory-gftables (bz 2372455) - -* Wed Jun 11 2025 Jerry James - 1.25.05-3 -- Rebuild for normaliz 3.10.5 - -* Tue Jun 03 2025 Python Maint - 1.25.05-2 -- Rebuilt for Python 3.14 - -* Thu May 29 2025 Jerry James - 1.25.05-1 -- Version 1.25.05 -- Drop upstreamed patches: no_gftables, fplll, codim-option, rightarrow -- Add patch to avoid the deprecated strstream C++ header -- Unbundle memtailor, mathic, and mathicgb - -* Thu Feb 20 2025 Jerry James - 1.24.11-1 -- Version 1.24.11 -- Drop upstreamed vector overrun patch -- Add patch to fix mismatched options to codim -- BR e-antic-devel -- BR and Recommend msolve -- Move configuration steps to %%conf -- Remove pessimization on s390x - -* Thu Jan 16 2025 Fedora Release Engineering - 1.24.05-6 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild - -* Fri Nov 22 2024 Benjamin A. Beasley - 1.24.05-5 -- Rebuild for libfplll 5.5.0 - -* Mon Sep 23 2024 Jerry James - 1.24.05-4 -- Rebuild for nauty 2.8.9 - -* Sat Aug 24 2024 Jerry James - 1.24.05-3 -- Rebuild for Singular 4.4.0p4 - -* Wed Jul 17 2024 Fedora Release Engineering - 1.24.05-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild - -* Wed Jun 19 2024 Jerry James - 1.24.05-1 -- Version 1.24.05 - -* Fri Feb 23 2024 Jerry James - 1.22-6 -- Build the polymake and scip examples -- Recommend scip -- Disable ppc64le build until segfaults can be diagnosed - -* Mon Jan 22 2024 Fedora Release Engineering - 1.22-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild - -* Fri Jan 19 2024 Fedora Release Engineering - 1.22-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild - -* Wed Jan 17 2024 Jonathan Wakely - 1.22-3 -- Rebuilt for Boost 1.83 - -* Fri Nov 10 2023 Benjamin A. Beasley - 1.22-2 -- Correct appstreamcli invocation (--nonet no longer works) -- Ask appstreamcli to explain validation findings -- Also validate AppStream XML with appstream-util, required by guidelines - -* Thu Oct 26 2023 Jerry James - 1.22-1 -- Version 1.22 -- Drop upstreamed Macaulay2-configure-c99.patch -- Build against mariadb-connector-c instead of the server package - -* Wed Jul 19 2023 Fedora Release Engineering - 1.21-6 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild - -* Sat Apr 15 2023 Florian Weimer - 1.21-5 -- Port configure script to C99 - -* Mon Feb 20 2023 Jonathan Wakely - 1.21-4 -- Rebuilt for Boost 1.81 - -* Wed Jan 18 2023 Fedora Release Engineering - 1.21-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild - -* Thu Jan 12 2023 Jerry James - 1.21-2 -- Rebuild for libfplll 5.4.4 - -* Thu Dec 22 2022 Jerry James - 1.21-1 -- Version 1.21 -- Drop upstreamed patch for crash when building documentation -- Use rdns names for the desktop and metainfo files - -* Tue Dec 20 2022 Jerry James - 1.20-2 -- Convert License tag to SPDX - -* Sun Sep 25 2022 Rich Mattes - 1.20-2 -- Rebuild for tinyxml2-9.0.0 - -* Thu Aug 4 2022 Jerry James - 1.20-1 -- Version 1.20 - -* Wed Jul 20 2022 Fedora Release Engineering - 1.19.1-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild - -* Wed May 04 2022 Thomas Rodgers - 1.19.1-2 -- Rebuilt for Boost 1.78 - -* Mon Feb 21 2022 Jerry James - 1.19.1-1 -- Version 1.19.1 -- Disable LTO to work around segfaults - -* Wed Jan 19 2022 Fedora Release Engineering - 1.19-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild - -* Wed Nov 24 2021 Jerry James - 1.19-1 -- Version 1.19 - -* Fri Aug 06 2021 Jonathan Wakely - 1.18-4 -- Rebuilt for Boost 1.76 - -* Wed Jul 21 2021 Fedora Release Engineering - 1.18-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild - -* Tue Jun 29 2021 Jerry James - 1.18-2 -- Rebuild for ntl 11.5.1 - -* Thu Jun 17 2021 Jerry James - 1.18-1 -- Version 1.18 - -* Thu Feb 18 2021 Jerry James - 1.17-2 -- Reduce optimization level on s390x to work around FTBFS -- Install metainfo -- Add -mathic patch to silence GCC warnings -- Add -lto patch to silence LTO warnings - -* Mon Jan 25 2021 Fedora Release Engineering - 1.17-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild - -* Sat Jan 16 2021 Jerry James - 1.17-1 -- Version 1.17 -- Drop upstreamed patches: -nauty-paths, -format -- Merge -gcc11 patch into mathicgb-1.0.patch - -* Thu Oct 15 2020 Jeff Law - 1.16-2 -- Add missing #includes for gcc-11 - -* Mon Aug 31 2020 Jerry James - 1.16-1 -- Version 1.16 -- Drop upstreamed patch: -xdg_open -- Add -ulimit patch for the slower builders -- Add -format and -rightarrow patches -- Bundle packages due to garbage collector crashes: linbox, memtailor, mathic -- Drop the XEmacs subpackage; XEmacs support no longer works - -* Sun Aug 16 2020 Iñaki Úcar - 1.15.1.0-5 -- https://fedoraproject.org/wiki/Changes/FlexiBLAS_as_BLAS/LAPACK_manager - -* Sat Aug 01 2020 Fedora Release Engineering - 1.15.1.0-4 -- Second attempt - Rebuilt for - https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild - -* Mon Jul 27 2020 Fedora Release Engineering - 1.15.1.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild - -* Wed Jul 1 2020 Jeff Law - 1.15.1.0-2 -- Disable LTO - -* Wed Jun 3 2020 Jerry James - 1.15.1.0-1 -- Version 1.15.1.0 -- Drop upstreamed patches: -no_Werror, -mpir, -pthreads, -fflas-ffpack, - -fno-common, -gtest, -pthreads - -* Tue Feb 11 2020 Jerry James - 1.14.0.1-4 -- Add -fno-common patch to fix FTBFS with GCC 10 - -* Tue Jan 28 2020 Fedora Release Engineering - 1.14.0.1-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild - -* Fri Jan 10 2020 Jerry James - 1.14.0.1-3 -- Rebuild for ntl 11.4.3 - -* Fri Nov 1 2019 Jerry James - 1.14.0.1-2 -- Rebuild for givaro 4.1.1, fflas-ffpack 2.4.3, and linbox 1.6.3 - -* Thu Sep 26 2019 Jerry James - 1.14.0.1-1 -- Macaulay2-1.14.0.1 -- Drop upstreamed -format and -exception patches -- Also bundle libmpc since it is linked with mpfr -- Drop fix for F26 symlink-file snafu -- Build with python 3 instead of python 2 - -* Wed Jul 24 2019 Fedora Release Engineering - 1.12.0.1-6 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Sun Feb 17 2019 Igor Gnatenko - 1.12.0.1-5 -- Rebuild for readline 8.0 - -* Thu Jan 31 2019 Fedora Release Engineering - 1.12.0.1-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Tue Nov 20 2018 Jerry James - 1.12.0.1-3 -- Rebuild for lrslib 070 - -* Wed Oct 10 2018 Jerry James - 1.12.0.1-2 -- Rebuild for ntl 11.3.0 -- Build with openblas instead of atlas (bz 1618938) - -* Fri Aug 10 2018 Jerry James - 1.12.0.1-1 -- Macaulay2-1.12.0.1 -- Replace tiny icon of unknown origin with various sizes of upstream's icon -- Remove deprecated entries from the desktop file -- Add upstream mpfr 3.1.6 patches - -* Thu Jul 12 2018 Fedora Release Engineering - 1.11-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Tue Jul 3 2018 Jerry James - 1.11-2 -- Rebuild for ntl 11.1.0 -- Remove scriptlets that call install-info -- Do not byte compile python files in the examples - -* Sat Jun 2 2018 Jerry James - 1.11-1 -- Macaulay2-1.11 -- Drop upstreamed patches: -verbose_build, -givaro, -pari, -endian -- New patches: -fflas-ffpack, -format, -exception, -fplll, -configure -- Update bundled software -- Refresh INFO_FILES list - -* Fri Feb 09 2018 Igor Gnatenko - 1.9.2-8 -- Escape macros in %%changelog - -* Wed Feb 07 2018 Fedora Release Engineering - 1.9.2-7 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Thu Jan 18 2018 Igor Gnatenko - 1.9.2-6 -- Remove obsolete scriptlets - -* Wed Oct 11 2017 Jerry James - 1.9.2-5 -- Link rather than copy the normaliz binary -- Fix accidental replacement of factory symlink with a directory - -* Sat Sep 30 2017 Jerry James - 1.9.2-4 -- Rebuild for ntl 10.5.0 - -* Wed Aug 02 2017 Fedora Release Engineering - 1.9.2-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild - -* Wed Jul 26 2017 Fedora Release Engineering - 1.9.2-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Wed Apr 5 2017 Jerry James - 1.9.2-1 -- Macaulay2-1.9.2 -- Drop upstreamed patches: -disable_broken_debug_functions, -gc, -rpath, - -rh_configure_hack -- Add patches: -givaro, -gtest, -pari -- Create fake library and submodule tarballs to fool the build system into - building in support for system libraries -- Bundle mpfr, flint, and factory to avoid garbage collector crashes -- Replace the (X)Emacs triggers with (x)emacs-filesystem dependencies -- New URLs - -* Fri Feb 10 2017 Fedora Release Engineering - 1.6-34 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild - -* Thu Jan 12 2017 Igor Gnatenko - 1.6-33 -- Rebuild for readline 7.x - -* Thu Oct 20 2016 Jerry James - 1.6-32 -- Rebuild for ntl 10.1.0 - -* Mon Sep 5 2016 Jerry James - 1.6-31 -- Rebuild for ntl 9.11.0 - -* Fri Aug 12 2016 Jerry James - 1.6-30 -- Rebuild for fflas-ffpack 2.2.2, givaro 4.0.2, and linbox 1.4.2 - -* Mon Jul 25 2016 Jerry James - 1.6-29 -- Rebuild for ntl 9.10.0 - -* Thu Jun 2 2016 Jerry James - 1.6-28 -- Rebuild for ntl 9.9.1 - -* Fri Apr 29 2016 Jerry James - 1.6-27 -- Rebuild for ntl 9.8.0 -- Nauty is now available -- Drop -gcc-template-bug patch; gcc bug has been fixed - -* Sat Mar 19 2016 Jerry James - 1.6-26 -- Rebuild for ntl 9.7.0 - -* Sat Feb 20 2016 Jerry James - 1.6-25 -- Rebuild for ntl 9.6.4 -- Add -gcc-template-bug patch to work around gcc bug (bz 1307282) - -* Wed Feb 03 2016 Fedora Release Engineering - 1.6-24 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Thu Jan 14 2016 Jonathan Wakely - 1.6-23 -- Rebuilt for Boost 1.60 - -* Fri Dec 4 2015 Jerry James - 1.6-22 -- Rebuild for ntl 9.6.2 -- Add python2 BR for the tests - -* Sat Oct 17 2015 Kalev Lember - 1.6-21 -- Rebuilt for libntl soname bump - -* Fri Oct 16 2015 Jerry James - 1.6-20 -- Rebuild for ntl 9.4.0 - -* Tue Sep 29 2015 Rex Dieter 1.6-19 -- refresh config.guess/config.sub hack, fix FTBFS on aarch64 - -* Sat Sep 19 2015 Jerry James - 1.6-18 -- Rebuild for flint 2.5.2 and ntl 9.3.0 - -* Thu Aug 27 2015 Jonathan Wakely - 1.6-17 -- Rebuilt for Boost 1.59 - -* Wed Jul 29 2015 Fedora Release Engineering - 1.6-16 -- Rebuilt for https://fedoraproject.org/wiki/Changes/F23Boost159 - -* Wed Jul 22 2015 David Tardon - 1.6-15 -- rebuild for Boost 1.58 - -* Tue Jun 16 2015 Fedora Release Engineering - 1.6-14 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Mon May 18 2015 Jerry James - 1.6-13 -- Rebuild for ntl 9.1.1 and cddlib-094h - -* Fri May 15 2015 Jerry James - 1.6-12 -- Bump and rebuild - -* Sat May 9 2015 Jerry James - 1.6-11 -- Rebuild for ntl 9.1.0 - -* Mon Feb 2 2015 Jerry James - 1.6-10 -- Rebuild for ntl 8.1.2 - -* Mon Jan 26 2015 Petr Machata - 1.6-9 -- Rebuild for boost 1.57.0 - -* Thu Jan 15 2015 Jerry James - 1.6-8 -- Rebuild for ntl 8.1.0 -- Fix the desktop file name - -* Wed Oct 29 2014 Jerry James - 1.6-7 -- Rebuild for ntl 6.2.1 -- Revert Apr 8 HTML creation timeout, now handled upstream -- Revert use of -common subpkg; various arches timeout differently - -* Wed Sep 24 2014 Rex Dieter 1.6-6 -- enable -common subpkg (to be more compatible with upstream packaging) - -* Fri Aug 15 2014 Fedora Release Engineering - 1.6-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild - -* Wed Jun 25 2014 Rex Dieter 1.6-4 -- restore --build/--host configure options lost in 1.6 update, should help arm - -* Fri Jun 06 2014 Fedora Release Engineering - 1.6-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Fri May 23 2014 Petr Machata - 1.6-2 -- Rebuild for boost 1.55.0 - -* Mon May 19 2014 Rex Dieter 1.6-1 -- Macaulay2-1.6 (#1074594) -- ExcludeArch: %%arm (#1099598) - -* Wed May 14 2014 Rex Dieter 1.5-8 -- rebuild (gc) - -* Tue Apr 8 2014 Jerry James - 1.5-7 -- Build for all arches -- Increase HTML creation timeouts for slower processors, such as ARM -- Add --build and --host invocations to configure to fix mismatched ARM names - -* Wed Apr 2 2014 Jerry James - 1.5-6 -- Rebuild for ntl 6.1.0 - -* Fri Mar 21 2014 Jerry James - 1.5-5 -- The normaliz patch was used; bring it back -- Complete the removal of the system_normaliz variable -- Link with RPM_LD_FLAGS -- Due to use of a static library, explicitly link with -lflint - -* Fri Jan 24 2014 Rex Dieter - 1.5-5 -- drop unused patches (4ti2, normalize) - -* Tue Jan 21 2014 Rex Dieter - 1.5-4 -- utilize %%_libexecdir/Macaulay2/... for helper/system binaries -- libdir: %%_libdir => %%_prefix/lib -- -common subpkg option (not used yet) - -* Tue Jan 14 2014 Jerry James - 1.5-3 -- Update normaliz interface for normaliz 2.8 and later - -* Tue Jul 30 2013 Petr Machata - 1.5-2 -- Rebuild for boost 1.54.0 - -* Thu May 23 2013 Rex Dieter 1.5-1 -- Release: 1 (using non-snapshot release tarball now) - -* Tue May 21 2013 Rex Dieter - 1.5-0.7.20130401 -- update to 20130401 r15955 snapshot release -- (Build)Requires: factory-gftables (see bug #965655) -- refresh INFO_FILES content - -* Mon May 6 2013 Jerry James - 1.5-0.6.20130214 -- Rebuild for m4ri 20130416 - -* Fri Feb 15 2013 Rex Dieter 1.5-0.5.20130214 -- r15838 (20130214 snapshot) - -* Wed Feb 13 2013 Rex Dieter 1.5-0.4.20120807 -- BR: doxygen-latex - -* Wed Feb 13 2013 Fedora Release Engineering - 1.5-0.3.20120807 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild - -* Tue Aug 07 2012 Rex Dieter 1.5-0.2.20120807 -- 1.5 20120807 r15022 snapshot - -* Thu Jul 19 2012 Rex Dieter 1.4-9 -- rebuild against (Singular's) libfac/factory 3.1.3 - -* Wed Jul 18 2012 Fedora Release Engineering - 1.4-8 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild - -* Tue Jul 03 2012 Rex Dieter 1.4-7 -- rebuild (pari) - -* Sun Jul 1 2012 pcpa - 1.4-6 -- Link to gmp not mpir. -- Rebuild with pari 2.5. - -* Wed May 30 2012 Rex Dieter -- 1.4-5 -- License: GPLv2 or GPLv3 (#821036) -- pkgconfig-style deps - -* Tue Feb 28 2012 Fedora Release Engineering - 1.4-4 -- Rebuilt for c++ ABI breakage - -* Thu Jan 12 2012 Fedora Release Engineering - 1.4-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild - -* Fri Sep 30 2011 Rex Dieter 1.4-2 -- rebuild (gdbm) - -* Thu May 26 2011 Rex Dieter 1.4-1 -- 1.4 - -* Thu May 26 2011 Rex Dieter 1.3.1-9 -- Typo in INFO_FILES (#708086) - -* Mon Feb 07 2011 Fedora Release Engineering - 1.3.1-8 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild - -* Wed Jun 30 2010 Rex Dieter - 1.3.1-7 -- BR: cddlib-static (#609698) - -* Tue Mar 16 2010 Rex Dieter - 1.3.1-6 -- rebuild (factory/libfac) - -* Tue Mar 16 2010 Mark Chappell - 1.3.1-5 -- Run install-info on all of the .info files we installed -- Re-enable the now functional ppc64 build - -* Wed Mar 10 2010 Mark Chappell - 1.3.1-4 -- Add in missing Requires runtime dependancies - -* Wed Mar 10 2010 Mark Chappell - 1.3.1-3 -- GPLv3/GPLv2 conflict, use compat-readline5 - bz#511299 - -* Tue Mar 09 2010 Mark Chappell - 1.3.1-2 -- Replace DSO patch with one accepted upstream -- Completely disable static linking - -* Wed Feb 24 2010 Mark Chappell - 1.3.1-1 -- Upstream version increment -- Remove unused patch -- Remove patch applied upstream -- Ensure consistent use of buildroot macro instead of RPM_BUILD_ROOT -- Fix implicit linking DSO failure -- Don't package empty .okay files which simply indicate test passes - -* Tue Dec 8 2009 Michael Schwendt - 1.2-7 -- Explicitly BR factory-static and libfac-static in accordance with the - Packaging Guidelines (factory-devel/libfac-devel are still static-only). - -* Tue Sep 22 2009 Rex Dieter - 1.2-6 -- fixup/optimize scriplets - -* Fri Jul 24 2009 Fedora Release Engineering - 1.2-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild - -* Fri Apr 17 2009 Rex Dieter - 1.2-4 -- rebuild for ntl-devel (shared) - -* Wed Feb 25 2009 Rex Dieter - 1.2-3 -- BR: libfac-devel,factory-devel >= 3.1 -- restore ExcludeArch: ppc64 (#253847) - -* Mon Feb 23 2009 Fedora Release Engineering - 1.2-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild - -* Fri Feb 13 2009 Rex Dieter 1.2-1 -- Macaulay-1.2 - -* Thu Oct 02 2008 Rex Dieter 1.1-2 -- respin (factory/libfac) - -* Tue Mar 11 2008 Rex Dieter 1.1-1 -- Macaulay2-1.1 -- Obsoletes/Provides: Macaulay2-common (upstream compatibility) -- re-enable ppc64 (#253847) -- IgnoreExampleErrors=true - -* Tue Feb 19 2008 Fedora Release Engineering - 0.9.95-10 -- Autorebuild for GCC 4.3 - -* Tue Dec 18 2007 Rex Dieter 0.9.95-9 -- Provides: macaulay2 -- respin against new(er) factory,libfac,ntl - -* Wed Aug 22 2007 Rex Dieter 0.9.95-8 -- ExcludeArch: ppc64 (#253847) - -* Tue Aug 21 2007 Rex Dieter 0.9.95-7 -- BR: gawk - -* Tue Aug 21 2007 Rex Dieter 0.9.95-6 -- gc-7.0 patches - -* Sat Aug 11 2007 Rex Dieter 0.9.95-5 -- License: GPLv2 - -* Mon Jan 15 2007 Rex Dieter 0.9.95-4 -- Ob/Pr: Macaulay2-doc, not -docs (#222609) - -* Sat Jan 06 2007 Rex Dieter 0.9.95-3 -- re-enable ppc build (#201739) - -* Tue Jan 02 2007 Rex Dieter 0.9.95-2 -- ./configure --disable-strip, for usable -debuginfo (#220893) - -* Mon Dec 18 2006 Rex Dieter 0.9.95-1 -- Macaulay2-0.9.95 - -* Wed Nov 22 2006 Rex Dieter 0.9.20-0.5.20060808svn -- .desktop Categories: -Application,Scientific,X-Fedora +ConsoleOnly - -* Tue Aug 29 2006 Rex Dieter 0.9.20-0.4.20060808svn -- fc6 respin - -* Tue Aug 08 2006 Rex Dieter 0.9.20-0.3.20060808svn -- ExcludeArch: ppc (bug #201739) -- %%ghost (x)emacs site-lisp bits (using hints from fedora-rpmdevtools) - -* Tue Aug 08 2006 Rex Dieter 0.9.20-0.2.20060808svn -- 20060808 snapshot - -* Mon Jul 24 2006 Rex Dieter 0.9.20-0.1.20060724svn -- 2006-07-15-0.9.20 - -* Wed Jul 12 2006 Rex Dieter 0.9.10-0.6.20060710svn -- 0.9.10 - --* Mon Jul 10 2006 Rex Dieter 0.9.8-0.6.cvs20060327 -- BR: ncurses-devel - -* Fri May 05 2006 Rex Dieter 0.9.8-0.4.cvs20060327 -- 64bit patch (#188709) - -* Wed Apr 12 2006 Rex Dieter 0.9.8-0.3.cvs20060327 -- omit x86_64, for now (#188709) - -* Tue Apr 11 2006 Rex Dieter 0.9.8-0.2.cvs20060327 -- 0.9.8 (cvs, no tarball yet) -- drop -doc subpkg (in main now) - -* Mon Apr 10 2006 Rex Dieter 0.9.2-22 -- fix icon location (#188384) - -* Thu Mar 30 2006 Rex Dieter 0.9.2-21 -- really disable %%check (fails on fc5+ anyway) - -* Fri Jan 20 2006 Rex Dieter 0.9.2-20 -- .desktop: drop Category=Development -- app icon: follow icon spec -- drop -emacs subpkg (in main now) - -* Fri Sep 16 2005 Rex Dieter - 0.9.2-19 -- disable 'make check' (fc5/buildsystem error), besides, we get a - good consistency check when M2 builds all the doc examples. - -* Wed Sep 14 2005 Rex Dieter - 0.9.2-18 -- rebuild against gc-6.6 - -* Thu May 26 2005 Michael Schwendt - 0.9.2-17 -- rebuild (build system x86_64 repository access failed for 0.9.2-16) -- fix build for GCC 4 (#156223) - -* Thu Apr 7 2005 Michael Schwendt - 0.9.2-15 -- rebuilt - -* Mon Feb 21 2005 Rex Dieter 0:0.9.2-14 -- x86_64 issues (%%_libdir -> %%_prefix/lib ) -- remove desktop_file macro usage - -* Sat Oct 23 2004 Rex Dieter 0:0.9.2-0.fdr.13 -- BR: time (again) -- omit m2_dir/setup (not needed/wanted) - -* Mon Oct 18 2004 Rex Dieter 0:0.9.2-0.fdr.12 -- actually *apply* gcc34 patch this time. - -* Mon Oct 18 2004 Rex Dieter 0:0.9.2-0.fdr.11 -- gcc34 patch - -* Fri Oct 1 2004 Rex Dieter 0:0.9.2-0.fdr.10 -- explicit BR versions for gc-devel, libfac-devel, factory-devel - -* Tue Aug 10 2004 Rex Dieter 0:0.9.2-0.fdr.9 -- BR: time - -* Thu Jun 03 2004 Rex Dieter 0:0.9.2-0.fdr.8 -- .desktop: remove Terminaloptions to be desktop agnostic -- .desktop: Categories += Education;Math;Development (Devel only - added so it shows *somewhere* in gnome menus) - -* Tue Jun 01 2004 Rex Dieter 0:0.9.2-0.fdr.7 -- disable default 'make check' (util/screen fails on fc2) - -* Tue Mar 30 2004 Rex Dieter 0:0.9.2-0.fdr.6 -- desktop-file is now on by default -- use separate (not inline) .desktop file - -* Mon Jan 05 2004 Rex Dieter 0:0.9.2-0.fdr.5 -- fix BuildRequires: desktop-file-utils to satisfy rpmlint. -- put emacs files in emacs subdir too (to follow supplied docs) -- *really* nuke .cvsignore files -- fix desktop-file-install --add-cateagories usage - -* Tue Dec 23 2003 Rex Dieter 0:0.9.2-0.fdr.4 -- -emacs: use %%defattr -- -emacs: fix M2-init.el - -* Mon Nov 17 2003 Rex Dieter 0:0.9.2-0.fdr.3 -- update/simplify macros -- desktop_file support. -- emacs subpkg. -- relax Req's on subpkgs to just: Requires: %%name = %%epoch:%%version -- use non-versioned BuildRequires -- remove redundant BuildRequires: gmp-devel -- remove gc patch, no longer needed. -- delete/not-package a bunch of unuseful files. -- use --disable-strip when debug_package is in use. - -* Thu Nov 13 2003 Rex Dieter 0:0.9.2-0.fdr.2 -- no longer explictly Requires: emacs - -* Wed Nov 05 2003 Rex Dieter 0:0.9.2-0.fdr.1 -- missing Epoch: 0 - -* Fri Sep 12 2003 Rex Dieter 0.9.2-0.fdr.0 -- fedora'ize diff --git a/com.macaulay2.macaulay2.metainfo.xml b/com.macaulay2.macaulay2.metainfo.xml deleted file mode 100644 index 0de35f5..0000000 --- a/com.macaulay2.macaulay2.metainfo.xml +++ /dev/null @@ -1,35 +0,0 @@ - - - com.macaulay2.macaulay2 - 0BSD - GPL-2.0-only OR GPL-3.0-only - Macaulay2 - System for algebraic geometry and commutative algebra - -

- Macaulay 2 is a software system devoted to supporting research in - algebraic geometry and commutative algebra written by Daniel R. Grayson - and Michael E. Stillman. -

- - com.macaulay2.macaulay2.desktop - - - https://faculty.math.illinois.edu/Macaulay2/Screenshots/texmacs.png - Macaulay2 with TeXmacs - - - https://faculty.math.illinois.edu/Macaulay2/Screenshots/emacs-M2-c.png - Macaulay2 with Emacs - - - Macaulay2-maintainers@fedoraproject.org - https://macaulay2.com/ - https://github.com/Macaulay2/M2/issues - https://groups.google.com/g/macaulay2 - - - M2 - M2-binary - - diff --git a/factory-4.1.1.patch b/factory-4.1.1.patch new file mode 100644 index 0000000..4438666 --- /dev/null +++ b/factory-4.1.1.patch @@ -0,0 +1,74 @@ +--- m4/flags.m4.orig 2018-02-15 07:02:18.000000000 -0700 ++++ m4/flags.m4 2020-07-12 20:46:53.024384864 -0600 +@@ -122,7 +122,7 @@ AC_DEFUN([SING_CHECK_SET_ARGS], [ + ## for clang: -Wunneeded-internal-declaration + + if test "x${ENABLE_OPTIMIZATION}" != xno; then +- OPTFLAGS="-g0 -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -fno-delete-null-pointer-checks" ++ OPTFLAGS="-Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -fno-delete-null-pointer-checks" + # -O3 - crashes gcc???!!! + # -fpermissive + AC_LANG_PUSH([C]) +--- m4/flint-check.m4.orig 2018-02-15 07:02:18.000000000 -0700 ++++ m4/flint-check.m4 2020-07-12 20:46:08.072325817 -0600 +@@ -69,7 +69,7 @@ for FLINT_HOME in ${FLINT_HOME_PATH} + [ + AC_TRY_RUN( + [#include +- int main () { if ((int) version[0] < 2) return -1; else return 0; } ++ int main () { if (__FLINT_VERSION < 2) return -1; else return 0; } + ],[ + flint_found="yes" + break +--- factory-4.1.1/cf_factory.h.orig 2017-12-06 10:37:14.000000000 -0700 ++++ factory-4.1.1/cf_factory.h 2018-02-17 14:34:52.000000000 -0700 +@@ -15,7 +15,7 @@ + #include "variable.h" + + #include "factory/cf_gmp.h" +-#include "factory/cf_assert.h" ++#include "cf_assert.h" + + class InternalCF; + class CanonicalForm; +--- factory-4.1.1/cf_switches.cc.orig 2017-12-06 10:37:11.000000000 -0700 ++++ factory-4.1.1/cf_switches.cc 2018-06-26 09:07:29.000000000 -0600 +@@ -31,6 +31,7 @@ CFSwitches::CFSwitches () + // and set the default (recommended) On-values: + #ifdef HAVE_NTL + On(SW_USE_CHINREM_GCD); ++ On(SW_USE_EZGCD_P); // provided to me by Hans Schoenemann + //Off(SW_USE_NTL_SORT); + #endif + On(SW_USE_EZGCD); +--- factory-4.1.1/configure.orig 2018-02-09 07:29:54.000000000 -0700 ++++ factory-4.1.1/configure 2020-07-12 20:19:22.755415850 -0600 +@@ -5827,7 +5827,7 @@ done + ## for clang: -Wunneeded-internal-declaration + + if test "x${ENABLE_OPTIMIZATION}" != xno; then +- OPTFLAGS="-g0 -O3 -Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -fno-delete-null-pointer-checks" ++ OPTFLAGS="-Wno-unused-function -Wno-trigraphs -Wno-unused-parameter -Wunknown-pragmas -Wno-unused-variable -fomit-frame-pointer -fwrapv -fvisibility=default -finline-functions -fno-exceptions -fno-threadsafe-statics -fno-enforce-eh-specs -fconserve-space -funroll-loops -fno-delete-null-pointer-checks" + # -O3 - crashes gcc???!!! + # -fpermissive + ac_ext=c +@@ -22481,7 +22481,7 @@ else + cat confdefs.h - <<_ACEOF >conftest.$ac_ext + /* end confdefs.h. */ + #include +- int main () { if ((int) version[0] < 2) return -1; else return 0; } ++ int main () { if (__FLINT_VERSION < 2) return -1; else return 0; } + + _ACEOF + if ac_fn_c_try_run "$LINENO"; then : +--- factory-4.1.1/ftmpl_inst.cc.orig 2017-12-06 10:37:12.000000000 -0700 ++++ factory-4.1.1/ftmpl_inst.cc 2018-05-15 12:28:00.560409016 -0600 +@@ -73,7 +73,7 @@ template List Difference ( con + // NTL 6 + #ifdef HAVE_NTL + #include +-#if NTL_MAJOR_VERSION == 6 ++#if NTL_MAJOR_VERSION >= 6 + + #include + #include diff --git a/linbox-1.6.3.patch b/linbox-1.6.3.patch new file mode 100644 index 0000000..f2481c0 --- /dev/null +++ b/linbox-1.6.3.patch @@ -0,0 +1,35 @@ +--- linbox-1.6.3/configure.ac.orig 2019-06-07 07:22:08.000000000 -0600 ++++ linbox-1.6.3/configure.ac 2020-06-05 12:24:32.920910975 -0600 +@@ -65,9 +65,8 @@ AC_PROG_CXX + + AC_COMPILER_NAME + +-STDFLAG=${CXXFLAGS} ++STDFLAG="" + +-CXXFLAGS="" + + # We need a C++11 compiler now - AB 2014-12-12 + # clang-3.8 does not support __float128 without explicitly passing it -std=c++11 +@@ -187,10 +186,6 @@ echo "---------------------------------- + echo " START LINBOX CONFIG " + echo "-----------------------------------------------" + +-# Checks which SIMD optimization flags to use and set SIMD_CFLAGS accordingly +-INSTR_SET +-AC_SUBST(SIMD_FLAGS) +- + dnl gcc-4.9.2 bug See https://trac.sagemath.org/ticket/17635#comment:178 + AS_IF([ test "x$CCNAM" = "xgcc492" ],[CXXFLAGS="${CXXFLAGS} -fpermissive"],[]) + +--- linbox-1.6.3/linbox/algorithms/gauss/gauss-solve-gf2.inl.orig 2019-06-07 07:22:08.000000000 -0600 ++++ linbox-1.6.3/linbox/algorithms/gauss/gauss-solve-gf2.inl 2020-02-01 16:19:20.692143829 -0700 +@@ -72,7 +72,7 @@ namespace LinBox + + Vector1 w(F2, A.coldim()); + +- for(typename Vector1::iterator it=w.begin()+(ptrdiff_t)Rank;it!=w.end();++it) ++ for(typename Vector1::iterator it=w.begin()+(long)Rank;it!=w.end();++it) + F2.assign(*it,F2.zero); + + return this->solve(x, w, Rank, Q, L, A, P, b); diff --git a/mathicgb-1.0.patch b/mathicgb-1.0.patch new file mode 100644 index 0000000..bcadb6a --- /dev/null +++ b/mathicgb-1.0.patch @@ -0,0 +1,42 @@ +--- src/mathicgb/MonoMonoid.hpp.orig 2017-06-06 10:08:53.000000000 -0600 ++++ src/mathicgb/MonoMonoid.hpp 2018-10-06 16:57:04.776068625 -0600 +@@ -582,6 +582,7 @@ public: + MATHICGB_ASSERT(i == varCount() / 2 || access(a, i*2+1) >= 0); + + uint64 A, B, AB; ++#if __BYTE_ORDER__ == __ORDER_LITTLE_ENDIAN__ + // We have to use std::memcpy here because just casting to a int64 breaks + // the strict aliasing rule which implies undefined behavior. Both MSVC and + // gcc don't actually call memcpy here. MSVC is a tiny bit slower for this +@@ -589,6 +590,11 @@ public: + std::memcpy(&A, ptr(a, i*2), 8); + std::memcpy(&B, ptr(b, i*2), 8); + std::memcpy(&AB, ptr(ab, i*2), 8); ++#else ++ A = *ptr(a, i*2) | (((uint64)*ptr(a, i*2 + 1)) << 32); ++ B = *ptr(b, i*2) | (((uint64)*ptr(b, i*2 + 1)) << 32); ++ AB = *ptr(ab, i*2) | (((uint64)*ptr(ab, i*2 + 1)) << 32); ++#endif + orOfXor |= AB ^ (A + B); + } + MATHICGB_ASSERT((orOfXor == 0) == isProductOf(a, b, ab)); +@@ -608,11 +614,19 @@ public: + uint64 orOfXor = 0; + for (VarIndex i = varCount() / 2; i != beforeEntriesIndexBegin(); --i) { + uint64 A1, A2, B, A1B, A2B; ++#if __BYTE_ORDER__ == __ORDER_LITTLE_ENDIAN__ + std::memcpy(&A1, ptr(a1, i*2), 8); + std::memcpy(&A2, ptr(a2, i*2), 8); + std::memcpy(&B, ptr(b, i*2), 8); + std::memcpy(&A1B, ptr(a1b, i*2), 8); + std::memcpy(&A2B, ptr(a2b, i*2), 8); ++#else ++ A1 = *ptr(a1, i*2) | (((uint64)*ptr(a1, i*2 + 1)) << 32); ++ A2 = *ptr(a2, i*2) | (((uint64)*ptr(a2, i*2 + 1)) << 32); ++ B = *ptr(b, i*2) | (((uint64)*ptr(b, i*2 + 1)) << 32); ++ A1B = *ptr(a1b, i*2) | (((uint64)*ptr(a1b, i*2 + 1)) << 32); ++ A2B = *ptr(a2b, i*2) | (((uint64)*ptr(a2b, i*2 + 1)) << 32); ++#endif + orOfXor |= (A1B ^ (A1 + B)) | (A2B ^ (A2 + B)); + } + MATHICGB_ASSERT diff --git a/sources b/sources index 96f74cc..dfff0b4 100644 --- a/sources +++ b/sources @@ -1,21 +1,25 @@ SHA512 (Macaulay2-icons.tar.xz) = 069aa0ad70a0253583b00091c094da9b79d2a2f0f2d38aa97f543081f5df5fd3b5a9e1463febd6947c3151cf01844133174c7372f57e158c2d3faba6baed5d1d -SHA512 (Macaulay2-1.25.11.tar.gz) = 7ae9ced76fa17e37715165976348b0e93793a6fc9d6f6f46af4f54513e2e81be648d3f462d403af373dd7cc62a675a2f3c946b70668f9cabbe7b379e3b42adff -SHA512 (4ti2-1.6.13.tar.gz) = 3e6335e5e539594d121e8b38972e6d4e3aec51f8b6b617ae308200142c8f79407d5b64e7ef246aa47ee2b7cf4006647a860ea7e2fd498ca34d001470ec06b2f8 -SHA512 (cddlib-094m.tar.gz) = d140d57391b1c963d68ca2e344fbda723a5077004bace322a18362fdc1fff8b50fdc4b598ca8cdf131158e07afc96c5d9aafd7abde082a9e241701e403310b9f +SHA512 (Macaulay2-1.16.tar.gz) = 3e69e2dc407af9bc6b4f7db2046788e509effb543286a98406655828ab1c462cb406abe350f91ba5d204934fa3f5d04f82d454cd441dce428f8d02ded68f2372 +SHA512 (4ti2-1.6.9.tar.gz) = f02b61ba04d7512e86d9574574669ec764d053fc5d01744dc6b521518d4165b41355ae12344923f1549b323406130c6562a4d9272b1b88de2ecc2c20d3d892d5 +SHA512 (cddlib-094h.tar.gz) = 94a3ef03fd86ece7e61e4f9bec283862594b05a6faca76897e33ad15762527c885cee5439bb8a5d337a608ceb17baff24910da326071a3107df17a0c07f5e774 SHA512 (cohomCalg-0.32.tar.gz) = b76d8de00b13a8fe8881222178247c5e99c15075c46290830f6c3afffb9dfc18af0d57f738ac5a0d7c00044db81b4465d1e0563c95f7f656a2440be5765c6818 SHA512 (Csdp-6.2.0.tgz) = 6f6c44abcb7b0e277f5a42a1e31acbd41c8fbdce0c1641982a48199fe1d922b28d86433d1a98ac71ae521bea04188a830c441db1e9d8eebf174debf501430e82 -SHA512 (factory-4.4.1.tar.gz) = a6ebed7cc0dea06a40c596f8845194633b6175670119afc11cb93269940ff6866a270549b9796929c1cc216645d01386ddea455a07d9ea033ce937baa4a05dfe -SHA512 (flint-3.3.1.tar.gz) = c426655868fd104c7c9fb95ba1ed199f63168cfda6f2379ba7f249344fee32660a095f20ecf11666f47ee0c59e350213e16706ce13eb6c3cb41967f1eec81166 -SHA512 (fplll-5.5.0.tar.gz) = ffeeeb55c2e4dccb9c7fd2753e49fa3514ae0c88a119131fa6281b213566813c481f95befe0acde344c8c032d8341ef1ec074cd66b130de4f8b8f6eb20f40613 -SHA512 (frobby_v0.9.5.tar.gz) = 321da2c83ddd1e1364a2e97cdf69c9b7bc6d2a59583aeab93526030151222049bb7b7e32287e7575cab4d0d22593a92a1f926092b1ed8f9da6b4d68118371bdb +SHA512 (factory-4.1.1.tar.gz) = f08d74cb860145c07b9f1cc0a3fe44cb6fb2fc158a9b992f0db55eeef9e93d280cf66a5c8822236389e54b8084d2a37c174b32864e4dc12b8ee3c4760e9fe2bf +SHA512 (flint-2.6.3.tar.gz) = 8e71570364c789b1d4eaaa5f5adf10212cab47bf1a9f45c333211035ed021a86bb7b1de1feec51e83b2e113e8168853e370f127d2d2b1e941a12aec71fe8ae9e +SHA512 (frobby_v0.9.0.tar.gz) = bc96ff20ec334932b5eaa8a3d15d0e36eab41eb85e8b74dbdc374dcaafc9873e44a8af16f6caae649aeea17cd6284caf244d4d345689ad43288f199c591a68a6 SHA512 (gfan0.6.2.tar.gz) = 08a9cc543967771af959a506b79db5b55e0e4942e4170dad8691db35ef7d381d878e1ea6534a3cacc0f5d30ec31564ec94cc20b46792d06f18a3a8a3c0aac91d -SHA512 (givaro-4.2.1.tar.gz) = 9ab55e19d6c205832ddb8f712691b79ea7ae796848fb2cb73ff8fcd2fd3ce06ec0d2b86c3e1ba4a0b9992156777524b26e754615d7b9809daeab9ff284be5885 -SHA512 (glpk-5.0.tar.gz) = 36bcba534ed69b0f5328f4626018359efe07f802322c0821db75c7d1935f760af8cb907189d7d7c5b2f134a8b6214ae747ca004acc4c5ceccf157f6fc311523d -SHA512 (linbox-1.7.1.tar.gz) = f13f607c4e7c4b6eb569d03007b96bc6ab4d57f520cfa557fda71c62eec43e23c24260c7495dbed9c39ddff18674c22eb72e43cff43fe7d0396f848f19df7595 -SHA512 (lrslib-073.tar.gz) = f5d283c3c9bcc8ea83c1f6a0ce184202ccd0818987caaa7cf32fe8287cf8277802587f5001dc44878658c962c48fe6ae1250e9a522bb2bf0fa1d0ca8b84e1b9a -SHA512 (M2-emacs-5249684.tar.gz) = 11c59430232e206b70042f0d365174a80f613ac528c18275cafaf28db32c06be7afe535ee61b10810caa7b5a21023abb0bd0ce30ee2e31fcf56565c20551d8df -SHA512 (mpfr-4.2.2.tar.gz) = 373c5ce2c9636e45685dfa94f45bc4f8f6c2c0512d634b9e065ec33cb29da727b3ea13cf23aff307c1da765a40064f0fd4a347a3849ebd97252984fc85a0a400 -SHA512 (mpsolve-3.2.3.tar.gz) = 27f3966f9ba6d96fd19551f574c4e917258f45f0f25c183b714a8a64a7fa9e4764c2466770dc78240ec431a745f3659c2acbff68ff1a9c89a81106eb25eb51fc -SHA512 (TOPCOM-1.1.2.tar.gz) = 8f0d6dcfe5d83b260f671d4fd231a8e5a902668d2bf02d0977fbfa6a1d49e0ba3f1f51f2305267a4cbc0591c183c07642ef3d9613aae8f27f1832fe96ca90abb -SHA512 (v0.9.2.tar.gz) = 2d205f1b74c445059f3b4ad6af45b10fc2eff2a0d41b373f71199965237dea200342702d0a0b5027f0d7e323d89d3317a89ef9ebe9f00a7f6341c37b436360bb -SHA512 (v3.12.1.tar.gz) = eedfbae0447a965da66fea6dcd1a561717faede85e0f2e19a794d3947f6b8b4649b3415786ceba65914755766fafc0c2ff4ba80dfd309230145f879e6b900284 +SHA512 (givaro-4.1.1.tar.gz) = baaf139f42176838c541143a5b69acf47a8f31c17020a85cf413ce18ade2c3048e009d15c2acf4d71041c0776cd42f5fedb1c183ce1cc0f85cb8672ceac00ee7 +SHA512 (glpk-4.59.tar.gz) = ca05bd085880143acf4a440cf7efd2392d4dde89bed53a0e5726526cb210eee004bfcd434aeb8ca8abb1dc89ff93e72054489911e5e2c843e0ed631d50c55f56 +SHA512 (gtest-1.10.0.tar.gz) = bd52abe938c3722adc2347afad52ea3a17ecc76730d8d16b065e165bc7477d762bce0997a427131866a89f1001e3f3315198204ffa5d643a9355f1f4d0d7b1a9 +SHA512 (lapack-3.6.0.tgz) = 0975c721abe38ef46cda2ba446060428e2f576ec4558cc0205ca6af2af2bd8f7f4c31fd0c90d77a92719a73e1942fade19b4c17e6fe2da29d54ad1adccf5a6b2 +SHA512 (libfplll-5.2.0.tar.gz) = 67d1a8deb92d3f9245983b09b7593b19c5d43c8fe77cfea893ea9dfb744bcb77b7239d73e4f619450cc6960f4c48fb1c6ba46268208b0f31f855cf1af6bfaa29 +SHA512 (linbox-1.6.3.tar.gz) = 7585f51b46b65a90328b4ff82f7c74eb59510c912a0bb0ce49263f4c7c1e777c0f9961e4672fa36be6fb84035a019b8e212615c363fd62d632e37c327d6ed3c0 +SHA512 (lrslib-062.tar.gz) = 78fa6d470b2dd9cb06d1d15023debd8fafc27ed4df93cd90ef746071755f6b1fe9ee2c6a24659030b9a8851bd3ee3a699407586d320f3760c3d8a3a1c79d7116 +SHA512 (M2-emacs-7460c44.tar.gz) = 295e78238300dbefaa82ac0ea5b7d3eb538e2ec5677dd7f0588ee89c515ab29de899a0d1aa11b35f9d5c1e883e6f53059042662579740d43fc980e595100d11c +SHA512 (mathic-1.0.tar.gz) = 3bf767f77cec8aed0267752f8328d0599b2f4d31c3e4cffea69d9e9aa26a163d6a38e52e5b371e2ffc391f954003008cf734a75440b538d7ae4107ee1dd95f90 +SHA512 (mathicgb-1.0.tar.gz) = b7fdcbf20dc0bfaa3251bd681f4a61d5bbb16f62f4a577a902ad9bf176c359ad8ab10dd20b6ef06040c9955e149d8e022ce98c15531a6dd339876fa3a187ea68 +SHA512 (memtailor-1.0.tar.gz) = f3f185200b9f9cd381e9b920f0d6feb4bc721c5235a38b0d68515184430ca2fcb7d1c87762e6489d735d4791bd8cb63eb8bf1400b86e439188df8d9741dea943 +SHA512 (mpfr-4.1.0.tar.xz) = 1bd1c349741a6529dfa53af4f0da8d49254b164ece8a46928cdb13a99460285622d57fe6f68cef19c6727b3f9daa25ddb3d7d65c201c8f387e421c7f7bee6273 +SHA512 (mpsolve-3.2.1.tar.gz) = 8f0cb1be303767bf5a68c150df01c98f7f5e17bfaee685ea4cb9300c0dbf740069c774d647f141a4a1eb46fa54f23d9e75a800ce195cd522527c72e3c6aeed0f +SHA512 (normaliz-3.7.2.tar.gz) = 044a1b5c7e877cdfceedbe6b283b982b66e58f0cc5b0ccf6a63a293044d1348290fde92531b4c4a0a58f5263bb7696a2511b5a1dff94222c9e56a2fe3fccb69b +SHA512 (TOPCOM-0.17.8.tar.gz) = 8611e8bd36eda00646fb40794435f23e6af81ecbee93c40e8fe5f73905e673e6244cb0f8cc1fe5c29050e40c7d53a44c615c60cbbecc8452b3c85f1d8a816d7a