.gitignore

@@ -50,14 +50,3 @@
 /R-4.2.1.tar.gz
 /R-4.2.2.tar.gz
 /R-4.2.3.tar.gz
-/R-4.3.0.tar.gz
-/R-4.3.1.tar.gz
-/R-4.3.2.tar.gz
-/R-4.3.3.tar.gz
-/R-4.4.0.tar.gz
-/R-4.4.1.tar.gz
-/R-4.4.2.tar.gz
-/R-4.4.3.tar.gz
-/R-4.5.0.tar.gz
-/R-4.5.1.tar.gz
-/R-4.5.2.tar.gz

R.spec

@@ -1,5 +1,5 @@
-# We need +x on these files
-%global __brp_mangle_shebangs_exclude_from %{_libdir}/R/bin/
+# We do not want this (we need +x on files in %%{_libdir}/R/bin/)
+%define __brp_mangle_shebangs /usr/bin/true
 
 # The additional linker flags break binary R- packages
 # https://bugzilla.redhat.com/show_bug.cgi?id=2046246
@@ -12,8 +12,18 @@
 %bcond_without tests
 %endif
 
-# We need at least gcc 10
-%if 0%{?rhel} && 0%{?rhel} < 9
+# Using LTO breaks debuginfo (probably not true anymore?)
+# https://bugzilla.redhat.com/show_bug.cgi?id=1113404
+# Also, enabling LTO in Fedora 36 results in:
+# checking whether gfortran and gcc agree on double complex...
+# configure: WARNING: gfortran and gcc disagree on double complex
+# AND that leads to Fortran complex functions are not available on this platform
+%bcond_with lto
+
+# We need at least gcc 10 anyway
+%global enable_lto 1
+%if %{without lto} || (0%{?rhel} && 0%{?rhel} < 9)
+%global enable_lto 0
 %global _lto_cflags %nil
 %endif
 
@@ -25,13 +35,9 @@
 %global blasvar o
 %endif
 
-# Should be the previous version, to make mass-rebuilds easier
-%bcond_with bootstrap
-%global bootstrap_abi 4.4
-
 %global major_version 4
-%global minor_version 5
-%global patch_version 2
+%global minor_version 2
+%global patch_version 3
 
 Name:           R
 Version:        %{major_version}.%{minor_version}.%{patch_version}
@@ -60,8 +66,6 @@ BuildRequires:  libcurl-devel
 BuildRequires:  bzip2-devel
 BuildRequires:  xz-devel
 BuildRequires:  zlib-devel
-BuildRequires:  libdeflate-devel
-BuildRequires:  libzstd-devel
 BuildRequires:  tre-devel
 BuildRequires:  %{blaslib}-devel
 BuildRequires:  libSM-devel
@@ -70,7 +74,6 @@ BuildRequires:  libICE-devel
 BuildRequires:  libXt-devel
 BuildRequires:  libXmu-devel
 BuildRequires:  libicu-devel
-BuildRequires:  libtirpc-devel
 %ifarch %{valgrind_arches}
 BuildRequires:  valgrind-devel
 %endif
@@ -112,10 +115,24 @@ and called at run time.
 %package core
 Summary:        The minimal R components necessary for a functional runtime
 Requires:       libRmath%{?_isa} = %{version}-%{release}
-Requires:       tzdata
-Requires:       less
 Requires:       xdg-utils
-Requires:       zip, unzip
+# Bugzilla 1875165
+Recommends:     cups
+# R inherits the compiler flags it was built with, hence we need this on hardened systems
+Requires:       redhat-rpm-config
+Requires:       vi
+%if 0%{?fedora}
+Requires:       perl-interpreter
+%else
+Requires:       perl
+%endif
+Requires:       sed
+Requires:       gawk
+Requires:       tex(latex)
+Requires:       tex(dvips)
+Requires:       less
+Requires:       make
+Requires:       unzip
 
 %ifnarch %{java_arches}
 Provides:       R-java = %{version}-%{release}
@@ -125,9 +142,6 @@ Obsoletes:      R-java < 4.1.3-3
 # This is our ABI provides to prevent mismatched installs.
 # R packages should autogenerate a Requires: R(ABI) based on the R they were built against.
 Provides:       R(ABI) = %{major_version}.%{minor_version}
-%if %{with bootstrap}
-Provides:       R(ABI) = %{bootstrap_abi}
-%endif
 
 # These are the submodules that R-core provides. Sometimes R modules say they
 # depend on one of these submodules rather than just R. These are provided for
@@ -140,32 +154,32 @@ Provides:       R(ABI) = %{bootstrap_abi}
   print("Provides: R(" .. name .. ") = " .. rpm_version)
 }
 %add_submodule  base %{version}
-%add_submodule  boot 1.3-32
-%add_submodule  class 7.3-23
-%add_submodule  cluster 2.1.8.1
-%add_submodule  codetools 0.2-20
+%add_submodule  boot 1.3-28
+%add_submodule  class 7.3-21
+%add_submodule  cluster 2.1.4
+%add_submodule  codetools 0.2-19
 %add_submodule  compiler %{version}
 %add_submodule  datasets %{version}
-%add_submodule  foreign 0.8-90
+%add_submodule  foreign 0.8-84
 %add_submodule  graphics %{version}
 %add_submodule  grDevices %{version}
 %add_submodule  grid %{version}
-%add_submodule  KernSmooth 2.23-26
-%add_submodule  lattice 0.22-7
-%add_submodule  MASS 7.3-65
-%add_submodule  Matrix 1.7-4
+%add_submodule  KernSmooth 2.23-20
+%add_submodule  lattice 0.20-45
+%add_submodule  MASS 7.3-58.2
+%add_submodule  Matrix 1.5-3
 Obsoletes:      R-Matrix < 0.999375-7
 %add_submodule  methods %{version}
-%add_submodule  mgcv 1.9-3
-%add_submodule  nlme 3.1-168
-%add_submodule  nnet 7.3-20
+%add_submodule  mgcv 1.8-42
+%add_submodule  nlme 3.1-162
+%add_submodule  nnet 7.3-18
 %add_submodule  parallel %{version}
-%add_submodule  rpart 4.1.24
-%add_submodule  spatial 7.3-18
+%add_submodule  rpart 4.1.19
+%add_submodule  spatial 7.3-16
 %add_submodule  splines %{version}
 %add_submodule  stats %{version}
 %add_submodule  stats4 %{version}
-%add_submodule  survival 3.8-3
+%add_submodule  survival 3.5-3
 %add_submodule  tcltk %{version}
 %add_submodule  tools %{version}
 %add_submodule  translations %{version}
@@ -189,37 +203,39 @@ and called at run time.
 Summary:        Core files for development of R packages (no Java)
 Requires:       R-core%{?_isa} = %{version}-%{release}
 Requires:       libRmath-devel%{?_isa} = %{version}-%{release}
-# R inherits the compiler flags it was built with, hence we need this on hardened systems
-Requires:       redhat-rpm-config
 # You need all the BuildRequires for the development version
 Requires:       gcc-gfortran
 Requires:       gcc-c++
-Requires:       make
 Requires:       pkgconfig
+Requires:       tcl-devel
+Requires:       tk-devel
 Requires:       pcre2-devel
 Requires:       bzip2-devel
 Requires:       xz-devel
 Requires:       zlib-devel
-Requires:       libdeflate-devel
-Requires:       libzstd-devel
 Requires:       tre-devel
 Requires:       %{blaslib}-devel
 Requires:       libX11-devel
 Requires:       libicu-devel
-Requires:       libtirpc-devel
-Recommends:     tex(latex)
-Recommends:     texinfo-tex
-Recommends:     tidy
-Recommends:     devscripts-checkbashisms
+Requires:       tex(latex)
+Requires:       texinfo-tex
+Requires:       tex(ecrm1000.tfm)
+Requires:       tex(ptmr8t.tfm)
+Requires:       tex(ptmb8t.tfm)
+Requires:       tex(pcrr8t.tfm)
+Requires:       tex(phvr8t.tfm)
+Requires:       tex(ptmri8t.tfm)
+Requires:       tex(ptmro8t.tfm)
+Requires:       tex(cm-super-ts1.enc)
 %if 0%{?fedora}
 # No inconsolata on RHEL tex
-Recommends:     tex(inconsolata.sty)
+Requires:       tex(inconsolata.sty)
 # "‘qpdf’ is needed for checks on size reduction of PDFs"
 # qpdf is not in epel, and since 99% of R doesn't use it, we'll let it slide.
-Recommends:     qpdf
+Requires:       qpdf
 %endif
 
-Provides:       R-Matrix-devel = 1.7.4
+Provides:       R-Matrix-devel = 1.5.3
 Obsoletes:      R-Matrix-devel < 0.999375-7
 
 %ifarch %{java_arches}
@@ -307,22 +323,38 @@ from the R project.  This package provides the static libRmath library.
 
 %prep
 %setup -q
-%patch -P0 -p1 -b .fixpath
-# A bunch of macOS stuff in v4.5.2's archive
-find . -name '._*' -delete
+%patch0 -p1 -b .fixpath
+
+# Filter false positive provides.
+cat <<EOF > %{name}-prov
+#!/bin/sh
+%{__perl_provides} \
+| grep -v 'File::Copy::Recursive' | grep -v 'Text::DelimMatch'
+EOF
+
+%global __perl_provides %{_builddir}/R-%{version}/%{name}-prov
+chmod +x %{__perl_provides}
+
+# Filter unwanted Requires:
+cat << \EOF > %{name}-req
+#!/bin/sh
+%{__perl_requires} \
+| grep -v 'perl(Text::DelimMatch)'
+EOF
+%global __perl_requires %{_builddir}/R-%{version}/%{name}-req
+chmod +x %{__perl_requires}
 
 %build
 # Comment out default R_LIBS_SITE (since R 4.2) and set our own as always
 sed -i -e '/R_LIBS_SITE=/s/^/#/g' etc/Renviron.in
-# Only packages which are needed as runtime dependencies are rebuilt for
-# flatpaks in /app, build dependencies are from buildroot in /usr
-echo 'R_LIBS_SITE=${R_LIBS_SITE-'"'/usr/local/lib/R/site-library:/usr/local/lib/R/library:%{_libdir}/R/library:%{_datadir}/R/library%{?flatpak::/usr/%{_lib}/R/library:/usr/share/R/library}'"'}' >> etc/Renviron.in
+echo 'R_LIBS_SITE=${R_LIBS_SITE-'"'/usr/local/lib/R/site-library:/usr/local/lib/R/library:%{_libdir}/R/library:%{_datadir}/R/library'"'}' >> etc/Renviron.in
 # No inconsolata on RHEL tex
 %if 0%{?rhel}
 export R_RD4PDF="times,hyper"
 sed -i 's|inconsolata,||g' etc/Renviron.in
 %endif
 export R_PDFVIEWER="%{_bindir}/xdg-open"
+export R_PRINTCMD="lpr"
 export R_BROWSER="%{_bindir}/xdg-open"
 
 %ifarch %{java_arches}
@@ -334,14 +366,20 @@ export JAVA_HOME=%{_jvmdir}/jre
   rincludedir=%{_includedir}/R \
   rsharedir=%{_datadir}/R \
   --with-system-tre \
+%ifarch %{valgrind_arches}
+  --with-system-valgrind-headers \
+%endif
+  --with-lapack=%{blaslib}%{blasvar} \
   --with-blas=%{blaslib}%{blasvar} \
-  --with-lapack \
-  --with-tcl-config=/usr/%{_lib}/tclConfig.sh \
-  --with-tk-config=/usr/%{_lib}/tkConfig.sh \
+  --with-tcl-config=%{_libdir}/tclConfig.sh \
+  --with-tk-config=%{_libdir}/tkConfig.sh \
   --enable-R-shlib \
   --enable-prebuilt-html \
   --enable-R-profiling \
   --enable-memory-profiling \
+%if %{enable_lto}
+  --enable-lto \
+%endif
   | tee CONFIGURE.log
 cat CONFIGURE.log | grep -A30 'R is now' - > CAPABILITIES
 make V=1
@@ -366,8 +404,8 @@ install -p CAPABILITIES %{buildroot}%{_pkgdocdir}
 # Install libRmath files
 (cd src/nmath/standalone; make install DESTDIR=%{buildroot})
 
-mkdir -p %{buildroot}%{_sysconfdir}/ld.so.conf.d
-echo "%{_libdir}/R/lib" > %{buildroot}%{_sysconfdir}/ld.so.conf.d/%{name}-%{_arch}.conf
+mkdir -p %{buildroot}/etc/ld.so.conf.d
+echo "%{_libdir}/R/lib" > %{buildroot}/etc/ld.so.conf.d/%{name}-%{_arch}.conf
 
 mkdir -p %{buildroot}%{_datadir}/R/library
 
@@ -397,18 +435,12 @@ if [ ! -d "%{buildroot}%{_libdir}/R/include" ]; then
 fi
 
 # Symbolic link for LaTeX
-%{!?_texdir:  %global _texdir  %{_datadir}/texlive}
-%{!?_texdist: %global _texdist %{_texdir}/texmf-dist}
-for i in tex/latex bibtex/bib bibtex/bst; do
-  mkdir -p %{buildroot}%{_texdist}/$i
-  (cd %{buildroot}%{_texdist}/$i && ln -s %{_datadir}/R/texmf/$i R)
-done
-
-%if 0%{?flatpak}
-# keep compatibility with shebang dependencies
-mkdir -p %{buildroot}/usr/bin
-ln -s /app/bin/Rscript %{buildroot}/usr/bin/Rscript
-%endif
+if [ ! -d "%{buildroot}%{_datadir}/texmf/tex/latex/R" ]; then
+	mkdir -p %{buildroot}%{_datadir}/texmf/tex/latex
+	pushd %{buildroot}%{_datadir}/texmf/tex/latex
+	ln -s %{_datadir}/R/texmf/tex/latex R
+	popd
+fi
 
 %check
 %if %{with tests}
@@ -418,6 +450,20 @@ ulimit -s 16384
 TZ="Europe/Paris" make check
 %endif
 
+%post core
+/sbin/ldconfig
+
+%postun core
+/sbin/ldconfig
+if [ $1 -eq 0 ] ; then
+    /usr/bin/mktexlsr %{_datadir}/texmf &>/dev/null || :
+fi
+
+%posttrans core
+/usr/bin/mktexlsr %{_datadir}/texmf &>/dev/null || :
+
+%ldconfig_scriptlets -n libRmath
+
 %files
 # Metapackage
 
@@ -425,17 +471,7 @@ TZ="Europe/Paris" make check
 %{_bindir}/R
 %{_bindir}/Rscript
 %{_datadir}/R/
-# Links to LaTeX stuff
-%dir %{_texdir}
-%dir %{_texdist}
-%dir %{_texdist}/tex/
-%dir %{_texdist}/tex/latex/
-%{_texdist}/tex/latex/R
-%dir %{_texdist}/bibtex/
-%dir %{_texdist}/bibtex/bib/
-%{_texdist}/bibtex/bib/R
-%dir %{_texdist}/bibtex/bst/
-%{_texdist}/bibtex/bst/R
+%{_datadir}/texmf/tex/latex/R
 # Have to break this out for the translations
 %dir %{_libdir}/R/
 %{_libdir}/R/bin/
@@ -449,41 +485,24 @@ TZ="Europe/Paris" make check
 %dir %{_libdir}/R/library/
 %dir %{_libdir}/R/library/translations/
 %{_libdir}/R/library/translations/DESCRIPTION
-%lang(ar) %{_libdir}/R/library/translations/ar/
-%lang(bn) %{_libdir}/R/library/translations/bn/
-%lang(ca) %{_libdir}/R/library/translations/ca/
 %lang(da) %{_libdir}/R/library/translations/da/
 %lang(de) %{_libdir}/R/library/translations/de/
 %lang(en) %{_libdir}/R/library/translations/en*/
 %lang(es) %{_libdir}/R/library/translations/es/
 %lang(fa) %{_libdir}/R/library/translations/fa/
 %lang(fr) %{_libdir}/R/library/translations/fr/
-%lang(hi) %{_libdir}/R/library/translations/hi/
-%lang(hu) %{_libdir}/R/library/translations/hu/
-%lang(id) %{_libdir}/R/library/translations/id/
 %lang(it) %{_libdir}/R/library/translations/it/
 %lang(ja) %{_libdir}/R/library/translations/ja/
 %lang(ko) %{_libdir}/R/library/translations/ko/
 %lang(lt) %{_libdir}/R/library/translations/lt/
-%lang(ne) %{_libdir}/R/library/translations/ne/
 %lang(nn) %{_libdir}/R/library/translations/nn/
 %lang(pl) %{_libdir}/R/library/translations/pl/
 %lang(pt) %{_libdir}/R/library/translations/pt*/
 %lang(ru) %{_libdir}/R/library/translations/ru/
-%lang(sq) %{_libdir}/R/library/translations/sq/
 %lang(tr) %{_libdir}/R/library/translations/tr/
-%lang(ur) %{_libdir}/R/library/translations/ur/
 %lang(zh) %{_libdir}/R/library/translations/zh*/
 # base
-%dir %{_libdir}/R/library/base/
-%{_libdir}/R/library/base/CITATION
-%{_libdir}/R/library/base/demo/
-%{_libdir}/R/library/base/DESCRIPTION
-%{_libdir}/R/library/base/help/
-%doc %{_libdir}/R/library/base/html/
-%{_libdir}/R/library/base/INDEX
-%{_libdir}/R/library/base/Meta/
-%{_libdir}/R/library/base/R/
+%{_libdir}/R/library/base/
 # boot
 %dir %{_libdir}/R/library/boot/
 %{_libdir}/R/library/boot/bd.q
@@ -491,7 +510,7 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/boot/data/
 %{_libdir}/R/library/boot/DESCRIPTION
 %{_libdir}/R/library/boot/help/
-%doc %{_libdir}/R/library/boot/html/
+%{_libdir}/R/library/boot/html/
 %{_libdir}/R/library/boot/INDEX
 %{_libdir}/R/library/boot/Meta/
 %{_libdir}/R/library/boot/NAMESPACE
@@ -509,12 +528,12 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/class/CITATION
 %{_libdir}/R/library/class/DESCRIPTION
 %{_libdir}/R/library/class/help/
-%doc %{_libdir}/R/library/class/html/
+%{_libdir}/R/library/class/html/
 %{_libdir}/R/library/class/INDEX
 %{_libdir}/R/library/class/libs/
 %{_libdir}/R/library/class/Meta/
 %{_libdir}/R/library/class/NAMESPACE
-%doc %{_libdir}/R/library/class/NEWS
+%{_libdir}/R/library/class/NEWS
 %dir %{_libdir}/R/library/class/po/
 %lang(de) %{_libdir}/R/library/class/po/de/
 %lang(en) %{_libdir}/R/library/class/po/en*/
@@ -529,12 +548,14 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/cluster/data/
 %{_libdir}/R/library/cluster/DESCRIPTION
 %{_libdir}/R/library/cluster/help/
-%doc %{_libdir}/R/library/cluster/html/
+%{_libdir}/R/library/cluster/html/
 %{_libdir}/R/library/cluster/INDEX
 %{_libdir}/R/library/cluster/libs/
 %{_libdir}/R/library/cluster/Meta/
 %{_libdir}/R/library/cluster/NAMESPACE
-%doc %{_libdir}/R/library/cluster/NEWS.Rd
+%{_libdir}/R/library/cluster/NEWS.Rd
+%{_libdir}/R/library/cluster/R/
+%{_libdir}/R/library/cluster/test-tools.R
 %dir %{_libdir}/R/library/cluster/po/
 %lang(de) %{_libdir}/R/library/cluster/po/de/
 %lang(en) %{_libdir}/R/library/cluster/po/en*/
@@ -543,42 +564,26 @@ TZ="Europe/Paris" make check
 %lang(ko) %{_libdir}/R/library/cluster/po/ko/
 %lang(lt) %{_libdir}/R/library/cluster/po/lt/
 %lang(pl) %{_libdir}/R/library/cluster/po/pl/
-%{_libdir}/R/library/cluster/R/
-%{_libdir}/R/library/cluster/test-tools.R
 # codetools
 %dir %{_libdir}/R/library/codetools/
 %{_libdir}/R/library/codetools/DESCRIPTION
 %{_libdir}/R/library/codetools/help/
-%doc %{_libdir}/R/library/codetools/html/
+%{_libdir}/R/library/codetools/html/
 %{_libdir}/R/library/codetools/INDEX
 %{_libdir}/R/library/codetools/Meta/
 %{_libdir}/R/library/codetools/NAMESPACE
 %{_libdir}/R/library/codetools/R/
 # compiler
-%dir %{_libdir}/R/library/compiler/
-%{_libdir}/R/library/compiler/DESCRIPTION
-%{_libdir}/R/library/compiler/help/
-%doc %{_libdir}/R/library/compiler/html/
-%{_libdir}/R/library/compiler/INDEX
-%{_libdir}/R/library/compiler/Meta/
-%{_libdir}/R/library/compiler/NAMESPACE
-%{_libdir}/R/library/compiler/R/
+%{_libdir}/R/library/compiler/
 # datasets
-%dir %{_libdir}/R/library/datasets/
-%{_libdir}/R/library/datasets/data/
-%{_libdir}/R/library/datasets/DESCRIPTION
-%{_libdir}/R/library/datasets/help/
-%doc %{_libdir}/R/library/datasets/html
-%{_libdir}/R/library/datasets/INDEX
-%{_libdir}/R/library/datasets/Meta/
-%{_libdir}/R/library/datasets/NAMESPACE
+%{_libdir}/R/library/datasets/
 # foreign
 %dir %{_libdir}/R/library/foreign/
-%license %{_libdir}/R/library/foreign/COPYRIGHTS
+%{_libdir}/R/library/foreign/COPYRIGHTS
 %{_libdir}/R/library/foreign/DESCRIPTION
 %{_libdir}/R/library/foreign/files/
 %{_libdir}/R/library/foreign/help/
-%doc %{_libdir}/R/library/foreign/html/
+%{_libdir}/R/library/foreign/html/
 %{_libdir}/R/library/foreign/INDEX
 %{_libdir}/R/library/foreign/libs/
 %{_libdir}/R/library/foreign/Meta/
@@ -591,47 +596,16 @@ TZ="Europe/Paris" make check
 %lang(pl) %{_libdir}/R/library/foreign/po/pl/
 %{_libdir}/R/library/foreign/R/
 # graphics
-%dir %{_libdir}/R/library/graphics/
-%{_libdir}/R/library/graphics/demo/
-%{_libdir}/R/library/graphics/DESCRIPTION
-%{_libdir}/R/library/graphics/help/
-%doc %{_libdir}/R/library/graphics/html/
-%{_libdir}/R/library/graphics/INDEX
-%{_libdir}/R/library/graphics/libs/
-%{_libdir}/R/library/graphics/Meta/
-%{_libdir}/R/library/graphics/NAMESPACE
-%{_libdir}/R/library/graphics/R/
+%{_libdir}/R/library/graphics/
 # grDevices
-%dir %{_libdir}/R/library/grDevices/
-%{_libdir}/R/library/grDevices/afm/
-%{_libdir}/R/library/grDevices/demo/
-%{_libdir}/R/library/grDevices/DESCRIPTION
-%{_libdir}/R/library/grDevices/enc/
-%{_libdir}/R/library/grDevices/fonts/
-%{_libdir}/R/library/grDevices/help/
-%doc %{_libdir}/R/library/grDevices/html/
-%{_libdir}/R/library/grDevices/icc/
-%{_libdir}/R/library/grDevices/INDEX
-%{_libdir}/R/library/grDevices/libs/
-%{_libdir}/R/library/grDevices/Meta/
-%{_libdir}/R/library/grDevices/NAMESPACE
-%{_libdir}/R/library/grDevices/R/
+%{_libdir}/R/library/grDevices
 # grid
-%dir %{_libdir}/R/library/grid/
-%{_libdir}/R/library/grid/DESCRIPTION
-%doc %{_libdir}/R/library/grid/doc/
-%{_libdir}/R/library/grid/help/
-%doc %{_libdir}/R/library/grid/html/
-%{_libdir}/R/library/grid/INDEX
-%{_libdir}/R/library/grid/libs/
-%{_libdir}/R/library/grid/Meta/
-%{_libdir}/R/library/grid/NAMESPACE
-%{_libdir}/R/library/grid/R/
+%{_libdir}/R/library/grid/
 # KernSmooth
 %dir %{_libdir}/R/library/KernSmooth/
 %{_libdir}/R/library/KernSmooth/DESCRIPTION
 %{_libdir}/R/library/KernSmooth/help/
-%doc %{_libdir}/R/library/KernSmooth/html/
+%{_libdir}/R/library/KernSmooth/html/
 %{_libdir}/R/library/KernSmooth/INDEX
 %{_libdir}/R/library/KernSmooth/libs/
 %{_libdir}/R/library/KernSmooth/Meta/
@@ -650,14 +624,13 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/lattice/data/
 %{_libdir}/R/library/lattice/demo/
 %{_libdir}/R/library/lattice/DESCRIPTION
-%doc %{_libdir}/R/library/lattice/doc/
 %{_libdir}/R/library/lattice/help/
-%doc %{_libdir}/R/library/lattice/html/
+%{_libdir}/R/library/lattice/html/
 %{_libdir}/R/library/lattice/INDEX
 %{_libdir}/R/library/lattice/libs/
 %{_libdir}/R/library/lattice/Meta/
 %{_libdir}/R/library/lattice/NAMESPACE
-%doc %{_libdir}/R/library/lattice/NEWS.md
+%{_libdir}/R/library/lattice/NEWS
 %dir %{_libdir}/R/library/lattice/po/
 %lang(de) %{_libdir}/R/library/lattice/po/de/
 %lang(en) %{_libdir}/R/library/lattice/po/en*/
@@ -672,12 +645,12 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/MASS/data/
 %{_libdir}/R/library/MASS/DESCRIPTION
 %{_libdir}/R/library/MASS/help/
-%doc %{_libdir}/R/library/MASS/html/
+%{_libdir}/R/library/MASS/html/
 %{_libdir}/R/library/MASS/INDEX
 %{_libdir}/R/library/MASS/libs/
 %{_libdir}/R/library/MASS/Meta/
 %{_libdir}/R/library/MASS/NAMESPACE
-%doc %{_libdir}/R/library/MASS/NEWS
+%{_libdir}/R/library/MASS/NEWS
 %dir %{_libdir}/R/library/MASS/po
 %lang(de) %{_libdir}/R/library/MASS/po/de/
 %lang(en) %{_libdir}/R/library/MASS/po/en*/
@@ -689,19 +662,21 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/MASS/scripts/
 # Matrix
 %dir %{_libdir}/R/library/Matrix/
+%{_libdir}/R/library/Matrix/Copyrights
 %{_libdir}/R/library/Matrix/data/
+%{_libdir}/R/library/Matrix/doc/
 %{_libdir}/R/library/Matrix/DESCRIPTION
-%doc %{_libdir}/R/library/Matrix/doc/
+%{_libdir}/R/library/Matrix/Doxyfile
 %{_libdir}/R/library/Matrix/external/
 %{_libdir}/R/library/Matrix/help/
-%doc %{_libdir}/R/library/Matrix/html/
+%{_libdir}/R/library/Matrix/html/
 %{_libdir}/R/library/Matrix/include/
 %{_libdir}/R/library/Matrix/INDEX
 %{_libdir}/R/library/Matrix/libs/
-%license %{_libdir}/R/library/Matrix/LICENCE
+%{_libdir}/R/library/Matrix/LICENCE
 %{_libdir}/R/library/Matrix/Meta/
 %{_libdir}/R/library/Matrix/NAMESPACE
-%doc %{_libdir}/R/library/Matrix/NEWS.Rd
+%{_libdir}/R/library/Matrix/NEWS.Rd
 %dir %{_libdir}/R/library/Matrix/po/
 %lang(de) %{_libdir}/R/library/Matrix/po/de/
 %lang(en) %{_libdir}/R/library/Matrix/po/en*/
@@ -711,45 +686,20 @@ TZ="Europe/Paris" make check
 %lang(lt) %{_libdir}/R/library/Matrix/po/lt/
 %lang(pl) %{_libdir}/R/library/Matrix/po/pl/
 %{_libdir}/R/library/Matrix/R/
-%{_libdir}/R/library/Matrix/scripts/
 %{_libdir}/R/library/Matrix/test-tools.R
 %{_libdir}/R/library/Matrix/test-tools-1.R
 %{_libdir}/R/library/Matrix/test-tools-Matrix.R
 # methods
-%dir %{_libdir}/R/library/methods/
-%{_libdir}/R/library/methods/DESCRIPTION
-%{_libdir}/R/library/methods/help/
-%doc %{_libdir}/R/library/methods/html/
-%{_libdir}/R/library/methods/INDEX
-%{_libdir}/R/library/methods/libs/
-%{_libdir}/R/library/methods/Meta/
-%{_libdir}/R/library/methods/NAMESPACE
-%{_libdir}/R/library/methods/R/
+%{_libdir}/R/library/methods/
 # mgcv
-%dir %{_libdir}/R/library/mgcv/
-%{_libdir}/R/library/mgcv/CITATION
-%{_libdir}/R/library/mgcv/data/
-%{_libdir}/R/library/mgcv/DESCRIPTION
-%{_libdir}/R/library/mgcv/help/
-%doc %{_libdir}/R/library/mgcv/html/
-%{_libdir}/R/library/mgcv/INDEX
-%{_libdir}/R/library/mgcv/libs/
-%{_libdir}/R/library/mgcv/Meta/
-%{_libdir}/R/library/mgcv/NAMESPACE
-%dir %{_libdir}/R/library/mgcv/po/
-%lang(de) %{_libdir}/R/library/mgcv/po/de/
-%lang(en) %{_libdir}/R/library/mgcv/po/en*/
-%lang(fr) %{_libdir}/R/library/mgcv/po/fr/
-%lang(ko) %{_libdir}/R/library/mgcv/po/ko/
-%lang(pl) %{_libdir}/R/library/mgcv/po/pl/
-%{_libdir}/R/library/mgcv/R/
+%{_libdir}/R/library/mgcv/
 # nlme
 %dir %{_libdir}/R/library/nlme/
 %{_libdir}/R/library/nlme/CITATION
 %{_libdir}/R/library/nlme/data/
 %{_libdir}/R/library/nlme/DESCRIPTION
 %{_libdir}/R/library/nlme/help/
-%doc %{_libdir}/R/library/nlme/html/
+%{_libdir}/R/library/nlme/html/
 %{_libdir}/R/library/nlme/INDEX
 %{_libdir}/R/library/nlme/libs/
 %{_libdir}/R/library/nlme/Meta/
@@ -768,12 +718,12 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/nnet/CITATION
 %{_libdir}/R/library/nnet/DESCRIPTION
 %{_libdir}/R/library/nnet/help/
-%doc %{_libdir}/R/library/nnet/html/
+%{_libdir}/R/library/nnet/html/
 %{_libdir}/R/library/nnet/INDEX
 %{_libdir}/R/library/nnet/libs/
 %{_libdir}/R/library/nnet/Meta/
 %{_libdir}/R/library/nnet/NAMESPACE
-%doc %{_libdir}/R/library/nnet/NEWS
+%{_libdir}/R/library/nnet/NEWS
 %dir %{_libdir}/R/library/nnet/po
 %lang(de) %{_libdir}/R/library/nnet/po/de/
 %lang(en) %{_libdir}/R/library/nnet/po/en*/
@@ -783,28 +733,19 @@ TZ="Europe/Paris" make check
 %lang(pl) %{_libdir}/R/library/nnet/po/pl/
 %{_libdir}/R/library/nnet/R/
 # parallel
-%dir %{_libdir}/R/library/parallel/
-%{_libdir}/R/library/parallel/DESCRIPTION
-%doc %{_libdir}/R/library/parallel/doc/
-%{_libdir}/R/library/parallel/help/
-%doc %{_libdir}/R/library/parallel/html/
-%{_libdir}/R/library/parallel/INDEX
-%{_libdir}/R/library/parallel/libs/
-%{_libdir}/R/library/parallel/Meta/
-%{_libdir}/R/library/parallel/NAMESPACE
-%{_libdir}/R/library/parallel/R/
+%{_libdir}/R/library/parallel/
 # rpart
 %dir %{_libdir}/R/library/rpart/
 %{_libdir}/R/library/rpart/data/
 %{_libdir}/R/library/rpart/DESCRIPTION
-%doc %{_libdir}/R/library/rpart/doc/
+%{_libdir}/R/library/rpart/doc/
 %{_libdir}/R/library/rpart/help/
-%doc %{_libdir}/R/library/rpart/html/
+%{_libdir}/R/library/rpart/html/
 %{_libdir}/R/library/rpart/INDEX
 %{_libdir}/R/library/rpart/libs/
 %{_libdir}/R/library/rpart/Meta/
 %{_libdir}/R/library/rpart/NAMESPACE
-%doc %{_libdir}/R/library/rpart/NEWS.Rd
+%{_libdir}/R/library/rpart/NEWS.Rd
 %dir %{_libdir}/R/library/rpart/po
 %lang(de) %{_libdir}/R/library/rpart/po/de/
 %lang(en) %{_libdir}/R/library/rpart/po/en*/
@@ -818,12 +759,12 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/spatial/CITATION
 %{_libdir}/R/library/spatial/DESCRIPTION
 %{_libdir}/R/library/spatial/help/
-%doc %{_libdir}/R/library/spatial/html/
+%{_libdir}/R/library/spatial/html/
 %{_libdir}/R/library/spatial/INDEX
 %{_libdir}/R/library/spatial/libs/
 %{_libdir}/R/library/spatial/Meta/
 %{_libdir}/R/library/spatial/NAMESPACE
-%doc %{_libdir}/R/library/spatial/NEWS
+%{_libdir}/R/library/spatial/NEWS
 %dir %{_libdir}/R/library/spatial/po
 %lang(de) %{_libdir}/R/library/spatial/po/de/
 %lang(en) %{_libdir}/R/library/spatial/po/en*/
@@ -835,103 +776,28 @@ TZ="Europe/Paris" make check
 %{_libdir}/R/library/spatial/PP.files
 %{_libdir}/R/library/spatial/R/
 # splines
-%dir %{_libdir}/R/library/splines/
-%{_libdir}/R/library/splines/DESCRIPTION
-%{_libdir}/R/library/splines/help/
-%doc %{_libdir}/R/library/splines/html/
-%{_libdir}/R/library/splines/INDEX
-%{_libdir}/R/library/splines/libs/
-%{_libdir}/R/library/splines/Meta/
-%{_libdir}/R/library/splines/NAMESPACE
-%{_libdir}/R/library/splines/R/
+%{_libdir}/R/library/splines/
 # stats
-%dir %{_libdir}/R/library/stats/
-%license %{_libdir}/R/library/stats/COPYRIGHTS.modreg
-%{_libdir}/R/library/stats/demo/
-%{_libdir}/R/library/stats/DESCRIPTION
-%doc %{_libdir}/R/library/stats/doc/
-%{_libdir}/R/library/stats/help/
-%doc %{_libdir}/R/library/stats/html/
-%{_libdir}/R/library/stats/INDEX
-%{_libdir}/R/library/stats/libs/
-%{_libdir}/R/library/stats/Meta/
-%{_libdir}/R/library/stats/NAMESPACE
-%{_libdir}/R/library/stats/R/
-%{_libdir}/R/library/stats/SOURCES.ts
+%{_libdir}/R/library/stats/
 # stats4
-%dir %{_libdir}/R/library/stats4/
-%{_libdir}/R/library/stats4/DESCRIPTION
-%{_libdir}/R/library/stats4/help/
-%doc %{_libdir}/R/library/stats4/html/
-%{_libdir}/R/library/stats4/INDEX
-%{_libdir}/R/library/stats4/Meta/
-%{_libdir}/R/library/stats4/NAMESPACE
-%{_libdir}/R/library/stats4/R/
+%{_libdir}/R/library/stats4/
 # survival
-%dir %{_libdir}/R/library/survival/
-%{_libdir}/R/library/survival/CITATION
-%license %{_libdir}/R/library/survival/COPYRIGHTS
-%{_libdir}/R/library/survival/data/
-%{_libdir}/R/library/survival/DESCRIPTION
-%doc %{_libdir}/R/library/survival/doc/
-%{_libdir}/R/library/survival/help
-%doc %{_libdir}/R/library/survival/html/
-%{_libdir}/R/library/survival/INDEX
-%{_libdir}/R/library/survival/libs/
-%{_libdir}/R/library/survival/Meta/
-%{_libdir}/R/library/survival/NAMESPACE
-%doc %{_libdir}/R/library/survival/NEWS.Rd*
-%{_libdir}/R/library/survival/R/
+%{_libdir}/R/library/survival/
 # tcltk
-%dir %{_libdir}/R/library/tcltk/
-%{_libdir}/R/library/tcltk/demo/
-%{_libdir}/R/library/tcltk/DESCRIPTION
-%{_libdir}/R/library/tcltk/exec/
-%{_libdir}/R/library/tcltk/help/
-%doc %{_libdir}/R/library/tcltk/html/
-%{_libdir}/R/library/tcltk/INDEX
-%{_libdir}/R/library/tcltk/libs/
-%{_libdir}/R/library/tcltk/Meta/
-%{_libdir}/R/library/tcltk/NAMESPACE
-%{_libdir}/R/library/tcltk/R/
+%{_libdir}/R/library/tcltk/
 # tools
-%dir %{_libdir}/R/library/tools/
-%{_libdir}/R/library/tools/DESCRIPTION
-%{_libdir}/R/library/tools/help/
-%doc %{_libdir}/R/library/tools/html/
-%{_libdir}/R/library/tools/INDEX
-%{_libdir}/R/library/tools/libs/
-%{_libdir}/R/library/tools/Meta/
-%{_libdir}/R/library/tools/NAMESPACE
-%{_libdir}/R/library/tools/R/
-%{_libdir}/R/library/tools/wre.txt
+%{_libdir}/R/library/tools/
 # utils
-%dir %{_libdir}/R/library/utils/
-%{_libdir}/R/library/utils/DESCRIPTION
-%doc %{_libdir}/R/library/utils/doc/
-%{_libdir}/R/library/utils/help/
-%doc %{_libdir}/R/library/utils/html/
-%{_libdir}/R/library/utils/iconvlist
-%{_libdir}/R/library/utils/INDEX
-%{_libdir}/R/library/utils/libs/
-%{_libdir}/R/library/utils/Meta/
-%{_libdir}/R/library/utils/misc/
-%{_libdir}/R/library/utils/NAMESPACE
-%{_libdir}/R/library/utils/R/
-%{_libdir}/R/library/utils/Sweave/
-# end of packages
+%{_libdir}/R/library/utils/
 %{_libdir}/R/modules
-%license %{_libdir}/R/COPYING
-# %%doc %%{_libdir}/R/NEWS*
+%{_libdir}/R/COPYING
+# %%{_libdir}/R/NEWS*
 %{_libdir}/R/SVN-REVISION
 %{_infodir}/R-*.info*
 %{_mandir}/man1/*
 %{_pkgdocdir}
 %docdir %{_pkgdocdir}
-%{_sysconfdir}/ld.so.conf.d/*
-%if 0%{?flatpak}
-/usr/bin/Rscript
-%endif
+/etc/ld.so.conf.d/*
 
 %files core-devel
 %{_libdir}/pkgconfig/libR.pc
@@ -951,7 +817,7 @@ TZ="Europe/Paris" make check
 %endif
 
 %files -n libRmath
-%license doc/COPYING
+%doc doc/COPYING
 %{_libdir}/libRmath.so
 
 %files -n libRmath-devel
@@ -962,104 +828,6 @@ TZ="Europe/Paris" make check
 %{_libdir}/libRmath.a
 
 %changelog
-* Fri Oct 31 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.5.2-1
-- Update to 4.5.2
-
-* Tue Aug 05 2025 František Zatloukal <fzatlouk@redhat.com> - 4.5.1-3
-- Rebuilt for icu 77.1
-
-* Wed Jul 23 2025 Fedora Release Engineering <releng@fedoraproject.org> - 4.5.1-2
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild
-
-* Fri Jun 13 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.5.1-1
-- Update to 4.5.1
-
-* Wed Apr 23 2025 Yaakov Selkowitz <yselkowi@redhat.com> - 4.5.0-4
-- Fix flatpak build
-
-* Fri Apr 18 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.5.0-3
-- Add libzstd-devel to Requires
-
-* Fri Apr 18 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.5.0-2
-- Add tzdata to Requires
-
-* Fri Apr 18 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.5.0-1
-- Update to 4.5.0
-
-* Fri Feb 28 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.3-1
-- Update to 4.4.3
-
-* Thu Feb 27 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.2-5
-- Remove requirement on tck/tk devel packages
-
-* Thu Jan 16 2025 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.2-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild
-
-* Wed Jan 15 2025 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.2-3
-- Depend on compat tcl/tk 8 for now
-- Apply upstream patch for gcc15 compatibility
-
-* Sun Dec 08 2024 Pete Walter <pwalter@fedoraproject.org> - 4.4.2-2
-- Rebuild for ICU 76
-
-* Fri Nov 01 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.2-1
-- Update to 4.4.2
-
-* Mon Jul 22 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.1-5
-- Add less back as default PAGER
-
-* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 4.4.1-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
-
-* Fri Jul 05 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.1-3
-- Add libdeflate to Requires too
-
-* Thu Jul 04 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.1-2
-- Enable libdeflate
-
-* Mon Jun 17 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.1-1
-- Update to 4.4.1
-
-* Thu Apr 25 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.4.0-1
-- Update to 4.4.0
-
-* Thu Feb 29 2024 Iñaki Úcar <iucar@fedoraproject.org> - 4.3.3-1
-- Update to 4.3.3
-
-* Wed Jan 31 2024 Pete Walter <pwalter@fedoraproject.org> - 4.3.2-5
-- Rebuild for ICU 74
-
-* Mon Jan 22 2024 Fedora Release Engineering <releng@fedoraproject.org> - 4.3.2-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
-
-* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 4.3.2-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
-
-* Wed Nov 01 2023 Iñaki Úcar <iucar@fedoraproject.org> - 4.3.2-2
-- Revert adding flexiblas to LAPACK_LIBS as per discussion with Tomas Kalibera
-
-* Tue Oct 31 2023 Iñaki Úcar <iucar@fedoraproject.org> - 4.3.2-1
-- Update to 4.3.2
-
-* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 4.3.1-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
-
-* Tue Jul 11 2023 František Zatloukal <fzatlouk@redhat.com> - 4.3.1-2
-- Rebuilt for ICU 73.2
-
-* Fri Jun 16 2023 Iñaki Úcar <iucar@fedoraproject.org> - 4.3.1-1
-- Update to 4.3.1
-
-* Fri Apr 21 2023 Iñaki Úcar <iucar@fedoraproject.org> - 4.3.0-1
-- Update to 4.3.0
-- Enable LTO (except for EPEL8)
-- Drop some tools from Requires for R-core
-- Move latex-stuff to Recommends for R-core-devel
-- Mark all html and doc folders as documentation
-
-* Thu Mar 23 2023 Iñaki Úcar <iucar@fedoraproject.org> - 4.2.3-2
-- Enable libcurl > 7
-
 * Wed Mar 15 2023 Iñaki Úcar <iucar@fedoraproject.org> - 4.2.3-1
 - Update to 4.2.3
 - Adapt license tag to SPDX

sources

@@ -1 +1 @@
-SHA512 (R-4.5.2.tar.gz) = abc4ff1a1b18a1f480e7bceb3267074e30453b5a571034b4c2a1c53e1650a1bafaf86bc6ca37f117a2e4f6617039dedeedef4ba8743f38720fc70e4bed2ff0a4
+SHA512 (R-4.2.3.tar.gz) = 060bb4e1d1f1a5a0383a3b4372ac9247c0a20285020da17cebeb40ddc54da12d5f369ea243ea04d2c6970986fe22b3f9c37fbdfb3405cd8aa4f2353091ea9c5c

update-submodules.sh

@@ -1,22 +0,0 @@
-#! /usr/bin/bash
-
-if [ $# -eq 0 ]; then
-    >&2 echo "Usage: ./update-submodules.sh R-<version>.tar.gz"
-    exit 1
-fi
-
-TAR=$1
-DIR=$(tar tf $TAR | cut -d"/" -f1 | uniq)
-SPEC=$PWD/R.spec
-
-tar -xf $TAR
-pushd $DIR/src/library/Recommended
-for PKG in *.tar.gz; do
-    PKG="${PKG%.tar.gz}"
-    PKG_NAME="${PKG%_*}"
-    PKG_VERS="${PKG#*_}"
-    sed -i "s/submodule  $PKG_NAME.*/submodule  $PKG_NAME $PKG_VERS/" $SPEC
-    sed -i "s/R-$PKG_NAME-devel = .*/R-$PKG_NAME-devel = ${PKG_VERS//-/.}/" $SPEC
-done
-popd
-rm -rf $DIR