Rebuilt for https://fedoraproject.org/wiki/Fedora_44_Mass_Rebuild

Allow packages depending on `arbor` to resolve their deps.

.gitignore

@@ -3,3 +3,6 @@
 /arbor-fb5d4ea.tar.gz
 /arbor-0.3.tar.gz
 /arbor-0.5.2.tar.gz
+/arbor-0.6.tar.gz
+/arbor-0.7.tar.gz
+/arbor-0.9.0.tar.gz

.packit.yaml

@@ -0,0 +1,13 @@
+upstream_project_url: https://github.com/arbor-sim/arbor
+upstream_tag_template: v{version}
+
+jobs:
+  - job: pull_from_upstream
+    trigger: release
+    dist_git_branches:
+      - fedora-rawhide
+  - job: koji_build
+
+    trigger: commit
+    dist_git_branches:
+      - fedora-all

0001-Fix-a-few-typos-that-cause-failure-to-compile-with-G.patch

@@ -0,0 +1,41 @@
+From 8880ff435f69b515a57e60e8b7434dad9e47847e Mon Sep 17 00:00:00 2001
+From: "Benjamin A. Beasley" <code@musicinmybrain.net>
+Date: Thu, 16 Jan 2025 09:49:20 -0500
+Subject: [PATCH] Fix a few typos that cause failure to compile with GCC 15
+
+These were eventually included in
+76120d16c00ae67128c3c69421ab712f985f3445, along with many other changes.
+---
+ arbor/include/arbor/util/expected.hpp | 2 +-
+ python/strprintf.hpp                  | 2 +-
+ 2 files changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/arbor/include/arbor/util/expected.hpp b/arbor/include/arbor/util/expected.hpp
+index 9d860f65..1af88eb4 100644
+--- a/arbor/include/arbor/util/expected.hpp
++++ b/arbor/include/arbor/util/expected.hpp
+@@ -486,7 +486,7 @@ struct expected<void, E> {
+     // Swap ops.
+ 
+     void swap(expected& other) {
+-        data_.swap(other.data);
++        data_.swap(other.data_);
+     }
+ 
+     // Accessors.
+diff --git a/python/strprintf.hpp b/python/strprintf.hpp
+index 63801677..2ccf12c1 100644
+--- a/python/strprintf.hpp
++++ b/python/strprintf.hpp
+@@ -168,7 +168,7 @@ namespace impl {
+             for (auto& x: s.seq_) {
+                 if (!first) o << s.sep_;
+                 first = false;
+-                o << s.f(x);
++                o << s.f_(x);
+             }
+             return o;
+         }
+-- 
+2.47.1
+

0001-Quote-various-cmake-var-values.patch

@@ -0,0 +1,33 @@
+From 02bb37946cafdb5892c04a2e9804566c3d36e8a0 Mon Sep 17 00:00:00 2001
+From: "Ankur Sinha (Ankur Sinha Gmail)" <sanjay.ankur@gmail.com>
+Date: Mon, 29 Aug 2022 17:22:11 +0100
+Subject: [PATCH] Quote various cmake var values
+
+---
+ cmake/arbor-config.cmake.in | 10 +++++-----
+ 1 file changed, 5 insertions(+), 5 deletions(-)
+
+diff --git a/cmake/arbor-config.cmake.in b/cmake/arbor-config.cmake.in
+index c9edecdc..7b6e1391 100644
+--- a/cmake/arbor-config.cmake.in
++++ b/cmake/arbor-config.cmake.in
+@@ -46,11 +46,11 @@ endfunction()
+ 
+ set(ARB_VECTORIZE @ARB_VECTORIZE@)
+ set(ARB_WITH_GPU @ARB_WITH_GPU@)
+-set(ARB_ARCH @ARB_ARCH@)
+-set(ARB_MODCC_FLAGS @ARB_MODCC_FLAGS@)
+-set(ARB_CXX @CMAKE_CXX_COMPILER@)
+-set(ARB_CXX_FLAGS @CMAKE_CXX_FLAGS@)
+-set(ARB_CXX_FLAGS_TARGET @ARB_CXX_FLAGS_TARGET_FULL@)
++set(ARB_ARCH "@ARB_ARCH@")
++set(ARB_MODCC_FLAGS "@ARB_MODCC_FLAGS@")
++set(ARB_CXX "@CMAKE_CXX_COMPILER@")
++set(ARB_CXX_FLAGS "@CMAKE_CXX_FLAGS@")
++set(ARB_CXX_FLAGS_TARGET "@ARB_CXX_FLAGS_TARGET_FULL@")
+ 
+ _append_property(arbor::arbor INTERFACE_LINK_LIBRARIES @arbor_add_import_libs@)
+ _append_property(arbor::arborenv INTERFACE_LINK_LIBRARIES @arborenv_add_import_libs@)
+-- 
+2.37.2
+

arbor-0.9.0-pybind11-3.0.patch

@@ -0,0 +1,22 @@
+diff -Naur arbor-0.9.0-original/python/pyarb.hpp arbor-0.9.0/python/pyarb.hpp
+--- arbor-0.9.0-original/python/pyarb.hpp	2023-08-10 10:47:38.000000000 +0100
++++ arbor-0.9.0/python/pyarb.hpp	2025-11-03 08:24:00.093256311 +0000
+@@ -13,18 +13,6 @@
+ 
+ #include <pybind11/pybind11.h>
+ 
+-// Version check
+-#define mk_tok(x) #x
+-#define mk_ver(M, m, p) mk_tok(M) "." mk_tok(m) "." mk_tok(p)
+-#define PB11_ERR(M, m, p) "Required version of pybind11 is 2.8.1 <= version < 3.0.0 Found " mk_ver(M, m, p)
+-static_assert((PYBIND11_VERSION_HEX >= 0x02080100)
+-              &&
+-              (PYBIND11_VERSION_HEX  < 0x03000000),
+-              PB11_ERR(PYBIND11_VERSION_MAJOR, PYBIND11_VERSION_MINOR, PYBIND11_VERSION_PATCH));
+-#undef PB11_ERR
+-#undef mk_ver
+-#undef mk_tok
+-
+ namespace pyarb {
+ 
+ // Sample recorder object interface.

arbor.spec

@@ -14,15 +14,21 @@ Documentation is available at https://arbor.readthedocs.io/en/latest/
 }
 
 # Best to start with the serial version when debugging build failures
-%bcond_without mpich
-%bcond_without openmpi
+%bcond mpich 1
+%bcond openmpi 1
 
-%bcond_without tests
+%bcond tests 1
+
+# Python unit tests in MPI environment fail in a non-deterministic way.
+# Using pytest _as is_ doesn't work either and `-m unittest` does not
+# allow filtering tests as `pytest -k` does.
+# For now we don't run the Python MPI tests.
+%bcond mpi_py_unittest 0
 
 %global forgeurl            https://github.com/arbor-sim/arbor
 
 Name:           arbor
-Version:        0.5.2
+Version:        0.9.0
 Release:        %autorelease
 Summary:        Multi-compartment neural network simulation library
 
@@ -33,16 +39,28 @@ Source0:        %forgesource
 # script to run examples
 Source1:        https://raw.githubusercontent.com/arbor-sim/arbor/master/scripts/run_python_examples.sh
 Source2:        https://raw.githubusercontent.com/arbor-sim/arbor/master/scripts/run_cpp_examples.sh
-License:        BSD
+License:        BSD-3-Clause
 
-# This patch changes ext/CMakeLists.txt for automatically using tinyopt libraries by cmake command.
-#Patch1:         arbor-tinyopt_cmake.patch
+Patch:          0001-Quote-various-cmake-var-values.patch
+# Tests are failing to compile due to some missing includes
+Patch:          fix-missing-includes.patch
+# Fix a few typos that cause failure to compile with GCC 15
+#
+# These were eventually included in
+# 76120d16c00ae67128c3c69421ab712f985f3445, along with many other changes.
+Patch:          0001-Fix-a-few-typos-that-cause-failure-to-compile-with-G.patch
+# Remove the hard-coded pybind11 version check so that we can build with
+# pybind11 3.0; this is part of https://github.com/arbor-sim/arbor/pull/2481.
+Patch:          arbor-0.9.0-pybind11-3.0.patch
 
-# Random123 does not support these
-ExcludeArch:    mips64r2 mips32r2 s390
+# Random123 does not support:
+#   mips64r2 mips32r2 s390
+# https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval
+ExcludeArch:    mips64r2 mips32r2 s390x %{ix86}
 
 BuildRequires:  cmake
 BuildRequires:  make
+BuildRequires:  fmt-devel
 BuildRequires:  gcc-c++
 BuildRequires:  git-core
 BuildRequires:  gtest-devel
@@ -54,7 +72,7 @@ BuildRequires:  python3-devel
 BuildRequires:  python3-setuptools
 BuildRequires:  Random123-devel
 BuildRequires:  tclap-devel
-Provides:       python3-arbor = %{version}-%{release}
+BuildRequires:  pugixml-devel
 
 # For validation, but we don't have these BRs
 # BuildRequires:  julia julia-sundials julia-unitful julia-JSON
@@ -68,6 +86,9 @@ BuildRequires:  %{py3_dist seaborn}
 # Required by arbor
 Requires:       %{py3_dist numpy}
 
+# Provide Python meta data for packages requiring arbor
+%py_provides python3-arbor
+
 %description %{_description}
 
 %package devel
@@ -80,11 +101,13 @@ Provides:   arbor-static = %{version}-%{release}
 %package doc
 # Does not require the main package, since it may be installed by people using
 # the MPI builds
-Summary:    Documentation for arbor
+Summary:        Documentation for arbor
 BuildRequires:  python3-sphinx
 BuildRequires:  python3-sphinx_rtd_theme
 BuildRequires:  python3-svgwrite
 
+BuildArch:      noarch
+
 %description doc %{_description}
 
 %if %{with mpich}
@@ -134,7 +157,10 @@ Provides:   arbor-openmpi-static = %{version}-%{release}
 %endif
 
 %prep
-%forgesetup
+%forgeautosetup -p1
+
+# correct catalogue location
+sed -i 's|dummy-catalogue.so|lib/dummy-catalogue.so|' python/test/unit/test_catalogues.py
 
 # Disable failing padded test
 sed -i '/test_padded.cpp/ d' test/unit/CMakeLists.txt
@@ -159,6 +185,9 @@ find . -type f -name "CMakeLists.txt" -exec sed -i -e 's/ext-tclap//' -e 's/ext-
 # Correct Python shebangs in all files
 find . -type f -name "*" -exec sed -i 's|^#![  ]*/usr/bin/env.*python.*$|#!/usr/bin/python3|' {} 2>/dev/null ';'
 
+# Fix shebang (special case)
+sed -i 's|^#![  ]*/usr/env/bin.*python.*$|#!/usr/bin/python3|' example/lfp/neuron_lfp_example.py
+
 # test scripts
 cp %{SOURCE1} scripts/
 cp %{SOURCE2} scripts/
@@ -199,18 +228,11 @@ pushd build$MPI_COMPILE_TYPE  &&
         -DCMAKE_BUILD_TYPE:STRING="release" \\\
         -DARB_USE_BUNDLED_LIBS:BOOL=OFF \\\
         -DARB_USE_BUNDLED_PYBIND11:BOOL=OFF \\\
-%ifarch x86_64 i686 aarch64
-        -DARB_VECTORIZE:BOOL=ON \\\
-%else
         -DARB_VECTORIZE:BOOL=OFF \\\
-%endif
         -DARB_WITH_MPI:BOOL=$MPI_YES \\\
         -DARB_WITH_GPU:BOOL=OFF \\\
-%ifnarch s390x s390
-        -DARB_ARCH:STRING="native" \\\
-%else
         -DARB_ARCH:STRING="none" \\\
-%endif
+        -DARB_CXX_FLAGS_TARGET:STRING="-ffat-lto-objects" \\\
         -DCMAKE_INSTALL_LIBDIR=%{_lib} \\\
         -DARB_WITH_PYTHON:BOOL=ON \\\
         -DARB_PYTHON_LIB_PATH:STRING=$MPI_PYTHON3_SITEARCH \\\
@@ -237,9 +259,9 @@ popd || exit -1;
 }
 
 # Build serial version, dummy arguments
-%global __cc gcc
-%global __cxx g++
 %set_build_flags
+export CC=gcc
+export CXX=g++
 export MPI_SUFFIX=""
 export MPI_HOME=%{_prefix}
 export MPI_INCLUDE=%{_includedir}
@@ -250,17 +272,12 @@ export MPI_PYTHON3_SITEARCH=%{python3_sitearch}
 %{do_cmake_config}
 %{do_make_build}
 
-# Manually make docs in the serial build
-sphinx-build-%{python3_version} -b html doc html
-# Remove uneeded dotfiles
-rm -rfv html/{.buildinfo,.doctrees}
-
+# skip building sphinx docs because they bundle js/fonts and it's very hard to
+# unbundle
 
 # Build mpich version
 %if %{with mpich}
 %{_mpich_load}
-%global __cc mpicc
-%global __cxx mpicxx
 %set_build_flags
 export CC=mpicc
 export CXX=mpicxx
@@ -277,8 +294,6 @@ export MPI_COMPILE_TYPE="-mpich"
 # Build OpenMPI version
 %if %{with openmpi}
 %{_openmpi_load}
-%global __cc mpicc
-%global __cxx mpicxx
 %set_build_flags
 export CC=mpicc
 export CXX=mpicxx
@@ -324,6 +339,8 @@ export MPI_COMPILE_TYPE="-mpich"
 
 pushd $RPM_BUILD_ROOT/$MPI_BIN
     mv -v modcc{,$MPI_SUFFIX} -v
+    mv -v arbor-build-catalogue{,$MPI_SUFFIX} -v
+    mv -v lmorpho{,$MPI_SUFFIX} -v
 popd
 %{_mpich_unload}
 %endif
@@ -341,53 +358,58 @@ export MPI_COMPILE_TYPE="-openmpi"
 
 pushd $RPM_BUILD_ROOT/$MPI_BIN
     mv -v modcc{,$MPI_SUFFIX} -v
+    mv -v arbor-build-catalogue{,$MPI_SUFFIX} -v
+    mv -v lmorpho{,$MPI_SUFFIX} -v
 popd
 %{_openmpi_unload}
 %endif
 
 
-# https://github.com/arbor-sim/arbor/blob/master/.github/workflows/basic.yml
+# https://github.com/arbor-sim/arbor/blob/master/.github/workflows/test-matrix.yml
 %if %{with tests}
 %check
-# General tests
-export PYTHONPATH="%{buildroot}%{python3_sitearch}:%{buildroot}%{python3_sitelib}"
+
+# Taken from upstream's GitHub workflow
+%global mpirun mpirun -n %{_smp_build_ncpus}
 
 # these tests segfault, filter out
+gtest_filter="${gtest_filter--}${gtest_filter+:}*diffusion*"
+
 pushd build-serial
-    %{python3} ../python/test/unit/runner.py -v2
-    ./bin/unit
+    %{py3_test_envvars} %{python3} -m unittest discover -v -s ../python
+    ./bin/unit ${gtest_filter+--gtest_filter=}${gtest_filter-}
     ./bin/unit-modcc
     cp ../scripts/run_cpp_examples.sh .
     ./run_cpp_examples.sh
 popd
-./scripts/run_python_examples.sh
 
 # MPICH
 %if %{with mpich}
 %{_mpich_load}
-export PYTHONPATH="%{buildroot}/$MPI_PYTHON3_SITEARCH"
 pushd build-mpich
-    #./bin/unit --gtest_filter=-*mc_event_delivery*:*fvm_lowered*:*mc_cell_group*
-    mpirun -n %{_smp_build_ncpus} %{python3} ../python/test/unit_distributed/runner.py -v2
-    mpirun -n %{_smp_build_ncpus} ./bin/unit-mpi
+%if %{with mpi_py_unittest}
+    %{py3_test_envvars} %{mpirun} %{python3} -m unittest discover -v -s ../python
+%endif
+    %{mpirun} ./bin/unit-mpi
     cp ../scripts/run_cpp_examples.sh .
-    ./run_cpp_examples.sh "mpirun -n %{_smp_build_ncpus}"
+    ./run_cpp_examples.sh "%{mpirun}"
 popd
-./scripts/run_python_examples.sh  "mpirun -n %{_smp_build_ncpus}"
+%{py3_test_envvars} ./scripts/run_python_examples.sh  "%{mpirun}"
 %{_mpich_unload}
 %endif
 
 # OpenMPI
 %if %{with openmpi}
 %{_openmpi_load}
-export PYTHONPATH="%{buildroot}/$MPI_PYTHON3_SITEARCH"
 pushd build-openmpi
-    mpirun -n %{_smp_build_ncpus} %{python3} ../python/test/unit_distributed/runner.py -v2
-    mpirun -n %{_smp_build_ncpus} ./bin/unit-mpi
+%if %{with mpi_py_unittest}
+    %{py3_test_envvars} %{mpirun} %{python3} -m unittest discover -v -s ../python
+%endif
+    %{mpirun} ./bin/unit-mpi
     cp ../scripts/run_cpp_examples.sh .
-    ./run_cpp_examples.sh "mpirun -n %{_smp_build_ncpus}"
+    ./run_cpp_examples.sh "%{mpirun}"
 popd
-./scripts/run_python_examples.sh  "mpirun -n %{_smp_build_ncpus}"
+%{py3_test_envvars} ./scripts/run_python_examples.sh  "%{mpirun}"
 %{_openmpi_unload}
 %endif
 %endif
@@ -397,7 +419,10 @@ popd
 %license LICENSE ext/tinyopt/LICENSE-tinyopt
 %doc README.md
 %{_bindir}/modcc
+%{_bindir}/arbor-build-catalogue
+%{_bindir}/lmorpho
 %{python3_sitearch}/arbor
+%{_datadir}/arbor
 
 
 %files devel
@@ -411,7 +436,7 @@ popd
 
 %files doc
 %license LICENSE
-%doc html
+%doc example/
 
 
 %if %{with mpich}
@@ -419,7 +444,10 @@ popd
 %doc README.md
 %license LICENSE ext/tinyopt/LICENSE-tinyopt
 %{_libdir}/mpich/bin/modcc_mpich
+%{_libdir}/mpich/bin/arbor-build-catalogue_mpich
+%{_libdir}/mpich/bin/lmorpho_mpich
 %{python3_sitearch}/mpich/arbor
+%{_libdir}/mpich/share/arbor
 
 %files mpich-devel
 %{_libdir}/mpich/include/arbor
@@ -436,7 +464,10 @@ popd
 %doc README.md
 %license LICENSE ext/tinyopt/LICENSE-tinyopt
 %{_libdir}/openmpi/bin/modcc_openmpi
+%{_libdir}/openmpi/bin/arbor-build-catalogue_openmpi
+%{_libdir}/openmpi/bin/lmorpho_openmpi
 %{python3_sitearch}/openmpi/arbor
+%{_libdir}/openmpi/share/arbor
 
 %files openmpi-devel
 %{_libdir}/openmpi/include/arbor
@@ -450,78 +481,3 @@ popd
 
 %changelog
 %autochangelog
-
-* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-10
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 0.3-9
-- Rebuilt for Python 3.10
-
-* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-8
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Mon Oct 05 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3-7
-- Explicitly require setuptools
-
-* Fri Aug 28 2020 Jeff Law <law@redhat.com> - 0.3-6
-- Re-enable LTO
-- Do not force -march=native on armv7hl so that build architecture does not bleed
-  into the binaries.  This should probably be done on all targets
-
-* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-5
-- Second attempt - Rebuilt for
-  https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Mon Jul 27 2020 Jeff Law <law@redhat.com> - 0.3-4
-- Disable LTO for armv7hl build
-
-* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-3
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Sun Jun 28 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3-2
-- Update build flags to ensure CC and CXX are set correctly
-- https://lists.fedoraproject.org/archives/list/scitech@lists.fedoraproject.org/thread/BNKLXKY4O7BOTZ7LH7XDUTQO6FG2UWUT/#BNKLXKY4O7BOTZ7LH7XDUTQO6FG2UWUT
-
-* Mon Jun 08 2020 Antonio Trande <sagitter@fedoraproject.org> - 0.3-2
-- Move Provides lines to runtime packages
-- Add patch for using tinyopt libraries
-
-* Sat Jun 06 2020 Antonio Trande <sagitter@fedoraproject.org> - 0.3-1
-- Release 0.3
-
-* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 0.2.2-8.20200225gitfb5d4ea736282dce14c3284bc5db748b082db957
-- Rebuilt for Python 3.9
-
-* Thu Apr 02 2020 Björn Esser <besser82@fedoraproject.org> - 0.2.2-7.20200225gitfb5d4ea736282dce14c3284bc5db748b082db957
-- Fix string quoting for rpm >= 4.16
-
-* Wed Feb 26 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200226gitfb5d4ea736282dce14c3284bc5db748b082db957
-- Use new snapshot that fixes errors on 32 bit systems
-- No longer excludes i686 and armv7hl
-- Drop unneeded patch.
-
-* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10
-- Build from latest upstream snapshot
-- Freshen patch
-- Add exclude arches
-
-* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.2.2-4
-- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
-
-* Tue Dec 10 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-3
-- Enable tests
-- Add patch for test crash
-
-* Mon Dec 09 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-2
-- Remove arch info in provides for static
-- Temporarily disable tests
-- use python3-devel
-- Add documentation in separate sub-package
-- add python3-{mpich,openmpi} as requires that own MPI_PYTHON3_SITEARCH directories
-- Improve summaries for sub-packages to please rpmlint
-
-* Sat Dec 07 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-1
-- Update to latest release
-
-* Sun Jan 13 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.1-1
-- Initial rpm package

changelog

@@ -0,0 +1,75 @@
+* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-10
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
+
+* Fri Jun 04 2021 Python Maint <python-maint@redhat.com> - 0.3-9
+- Rebuilt for Python 3.10
+
+* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-8
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
+
+* Mon Oct 05 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3-7
+- Explicitly require setuptools
+
+* Fri Aug 28 2020 Jeff Law <law@redhat.com> - 0.3-6
+- Re-enable LTO
+- Do not force -march=native on armv7hl so that build architecture does not bleed
+  into the binaries.  This should probably be done on all targets
+
+* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-5
+- Second attempt - Rebuilt for
+  https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Mon Jul 27 2020 Jeff Law <law@redhat.com> - 0.3-4
+- Disable LTO for armv7hl build
+
+* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.3-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
+
+* Sun Jun 28 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.3-2
+- Update build flags to ensure CC and CXX are set correctly
+- https://lists.fedoraproject.org/archives/list/scitech@lists.fedoraproject.org/thread/BNKLXKY4O7BOTZ7LH7XDUTQO6FG2UWUT/#BNKLXKY4O7BOTZ7LH7XDUTQO6FG2UWUT
+
+* Mon Jun 08 2020 Antonio Trande <sagitter@fedoraproject.org> - 0.3-2
+- Move Provides lines to runtime packages
+- Add patch for using tinyopt libraries
+
+* Sat Jun 06 2020 Antonio Trande <sagitter@fedoraproject.org> - 0.3-1
+- Release 0.3
+
+* Tue May 26 2020 Miro Hrončok <mhroncok@redhat.com> - 0.2.2-8.20200225gitfb5d4ea736282dce14c3284bc5db748b082db957
+- Rebuilt for Python 3.9
+
+* Thu Apr 02 2020 Björn Esser <besser82@fedoraproject.org> - 0.2.2-7.20200225gitfb5d4ea736282dce14c3284bc5db748b082db957
+- Fix string quoting for rpm >= 4.16
+
+* Wed Feb 26 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200226gitfb5d4ea736282dce14c3284bc5db748b082db957
+- Use new snapshot that fixes errors on 32 bit systems
+- No longer excludes i686 and armv7hl
+- Drop unneeded patch.
+
+* Sun Feb 23 2020 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-5.20200223gitf12f934f365d9e68f01bfd857982be80da2ddd10
+- Build from latest upstream snapshot
+- Freshen patch
+- Add exclude arches
+
+* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.2.2-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
+
+* Tue Dec 10 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-3
+- Enable tests
+- Add patch for test crash
+
+* Mon Dec 09 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-2
+- Remove arch info in provides for static
+- Temporarily disable tests
+- use python3-devel
+- Add documentation in separate sub-package
+- add python3-{mpich,openmpi} as requires that own MPI_PYTHON3_SITEARCH directories
+- Improve summaries for sub-packages to please rpmlint
+
+* Sat Dec 07 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.2.2-1
+- Update to latest release
+
+* Sun Jan 13 2019 Ankur Sinha <ankursinha AT fedoraproject DOT org> - 0.1-1
+- Initial rpm package
+

fix-missing-includes.patch

@@ -0,0 +1,43 @@
+From fa15938c196bf317e0292d41ec7d341978e9ed08 Mon Sep 17 00:00:00 2001
+From: Sandro <devel@penguinpee.nl>
+Date: Mon, 29 Apr 2024 14:35:01 +0200
+Subject: [PATCH] Fix missing includes
+
+Tests are failing to compile without those.
+
+diff --git a/test/unit/common.hpp b/test/unit/common.hpp
+index db75e4d1..e02b9df2 100644
+--- a/test/unit/common.hpp
++++ b/test/unit/common.hpp
+@@ -11,6 +11,7 @@
+ #include <unordered_map>
+ #include <utility>
+ #include <vector>
++#include <algorithm>
+ 
+ #include <gtest/gtest.h>
+ 
+diff --git a/test/unit/test_event_queue.cpp b/test/unit/test_event_queue.cpp
+index daa0ccb9..17c10378 100644
+--- a/test/unit/test_event_queue.cpp
++++ b/test/unit/test_event_queue.cpp
+@@ -6,6 +6,7 @@
+ #include <arbor/spike_event.hpp>
+ 
+ #include "event_queue.hpp"
++#include "common.hpp"
+ 
+ using namespace arb;
+ 
+diff --git a/test/unit/test_ordered_forest.cpp b/test/unit/test_ordered_forest.cpp
+index c58c76a4..12f7bd31 100644
+--- a/test/unit/test_ordered_forest.cpp
++++ b/test/unit/test_ordered_forest.cpp
+@@ -5,6 +5,7 @@
+ 
+ #include <gtest/gtest.h>
+ #include "util/ordered_forest.hpp"
++#include "common.hpp"
+ 
+ using arb::util::ordered_forest;
+ 

sources

@@ -1 +1 @@
-SHA512 (arbor-0.5.2.tar.gz) = f53ff1d1e2fb5a00c941e5e44db73ca4cd96db1d7f22b88473b8c65569e3e50a73126d04c2fa1b583730c0760362b1172b114fccb49becd10daa8dc5d1ec07be
+SHA512 (arbor-0.9.0.tar.gz) = fa0280cae870c150c8f891949da9d6276f672bb7191b7b982cda4695dd38e3bffdd0dfa5f3acc2cf940909f64eb9da04cd11aeb7a4baa262fdbcd99be618aa15