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4 changed files with 56 additions and 52 deletions

22
.gitignore vendored
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@ -15,25 +15,3 @@
/bids-specification-schema-1.0.4.tar.gz
/bids-examples-f21306744fd57bfd5c8e8e91d907fa8448f9eca5-filtered.tar.zst
/bids-specification-schema-1.0.5.tar.gz
/bids-specification-schema-1.0.7.tar.gz
/bids-specification-schema-1.0.8.tar.gz
/bids-specification-schema-1.0.9.tar.gz
/bids-specification-schema-1.0.10.tar.gz
/bids-examples-54355d2bbfec3fc126dd3cb80c3db9813505e3df-filtered.tar.zst
/bids-specification-schema-1.0.11.tar.gz
/bids-examples-e742618e66cce8fa16bf1066caa47d543508857c-filtered.tar.zst
/bids-specification-schema-1.0.12.tar.gz
/bids-specification-schema-1.0.13.tar.gz
/bids-examples-ce064b0868cf5ccd0098850be12e5205bedfa671-filtered.tar.zst
/bids-specification-schema-1.0.14.tar.gz
/bids-specification-schema-1.1.0.tar.gz
/bids-examples-546cb454ca33327fb27474edb508ead17c4053ac-filtered.tar.zst
/bids-specification-schema-1.1.1.tar.gz
/bids-examples-8f916644b973b44c946b7617e96b04b7be312f89-filtered.tar.zst
/bids-specification-schema-1.1.2.tar.gz
/bids-specification-schema-1.1.3.tar.gz
/bids-examples-0410c4114bd819c403309b1d210983ddbed271ec-filtered.tar.zst
/bids-specification-schema-1.1.4.tar.gz
/bids-examples-9d114380a6cf4c24526eb71259b3f52d43a08ad7-filtered.tar.zst
/bids-specification-schema-1.1.5.tar.gz
/bids-examples-c68d3afa54b3271d4718de7abf6cb6d5e603fceb-filtered.tar.zst

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@ -1,3 +1,8 @@
# It is normal that extras metapackages should not have documentation, or any
# files at all.
addFilter(r"\+\w+.noarch: W: no-documentation")
# This is not a spelling error
addFilter(r" spelling-error \('([Mm]etapackage)s?',")
# There are no URLs for these sources because we must generate them with scripts:
addFilter(r" invalid-url Source[1-9]: .*\.tar\.zst$")
# These are fine; rpmlint does not understand .tar.zst

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@ -1,9 +1,5 @@
# Removable test dependency, not yet packaged:
# https://pypi.org/project/check-jsonschema
%bcond check_jsonschema 0
Name: bids-schema
Version: 1.1.5
Version: 1.0.5
Release: %autorelease
Summary: BIDS schema description
@ -16,7 +12,7 @@ Summary: BIDS schema description
# https://github.com/bids-standard/bids-schema/raw/refs/heads/main/…
# versions/%%{bidsversion}/schema/SCHEMA_VERSION
# should match or nearly match the schema version packaged here.
%global bidsversion 1.10.1
%global bidsversion 1.10.0
# The specification, and the schema data derived from it, are CC-BY-4.0.
#
@ -51,7 +47,7 @@ Source0: %{url}/archive/schema-%{srcversion}/bids-specification-schema-%{
# tools/schemacode/src/bidsschematools/conftest.py, which contains code to download
# these if they are not present.
%global examples_url https://github.com/bids-standard/bids-examples
%global examples_commit c68d3afa54b3271d4718de7abf6cb6d5e603fceb
%global examples_commit f21306744fd57bfd5c8e8e91d907fa8448f9eca5
%global error_examples_url https://github.com/bids-standard/bids-error-examples
%global error_examples_commit ac0a2f58f34ce284847dde5bd3b90d7ea048c141
#
@ -84,9 +80,6 @@ BuildRequires: python3-devel
# https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/#_linters,
# it is easier to enumerate test dependencies by hand.
BuildRequires: %{py3_dist pytest}
%if %{with check_jsonschema}
BuildRequires: %{py3_dist check-jsonschema}
%endif
%description
Portions of the BIDS specification are defined using YAML files in order to
@ -120,7 +113,7 @@ Features:
simple CLI bindings (e.g. bst export)
%pyproject_extras_subpkg -n python3-bidsschematools validation render expressions
%pyproject_extras_subpkg -n python3-bidsschematools render expressions
%prep
@ -140,7 +133,7 @@ rm -rf src/js/ src/css/
%generate_buildrequires
pushd tools/schemacode >/dev/null
%pyproject_buildrequires -x validation,render,expressions
%pyproject_buildrequires -x render,expressions
popd >/dev/null
@ -165,21 +158,17 @@ install -t '%{buildroot}%{_datadir}/bids-schema/versions/%{bidsversion}' \
pushd tools/schemacode >/dev/null
%pyproject_install
%pyproject_save_files -L bidsschematools
%pyproject_save_files -l bidsschematools
popd
# Include a copy of the “exported” JSON version of the schema in the base
# package to imitate the structure of
# https://github.com/bids-standard/bids-schema. See readthedocs.yml.
install -p -m 0644 \
-t '%{buildroot}%{_datadir}/bids-schema/versions/%{bidsversion}' \
'%{buildroot}%{python3_sitelib}/bidsschematools/data/schema.json'
# Unbundle the schema data from the Python library.
# Since the schema directory is replaced by a symbolic link into the base
# package, we must remove its contents from the files list, and we must remove
# the directory itself so that we can list it manually without %%dir.
sed -r -i '/\/bidsschematools\/data\/schema(\/|$)/d' %{pyproject_files}
for thing in metaschema.json schema.json
for thing in metaschema.json schema
do
rm "%{buildroot}%{python3_sitelib}/bidsschematools/data/${thing}"
rm -rv "%{buildroot}%{python3_sitelib}/bidsschematools/data/${thing}"
# Create an absolute symlink into the buildroot and then convert it to a
# relative one; the relative symlink works both in %%check and after the
# package is actually installed.
@ -189,6 +178,14 @@ do
symlinks -c -o "%{buildroot}%{python3_sitelib}/bidsschematools/data/${thing}"
done
# Generate and include a copy of the “exported” JSON version of the schema to
# imitate the structure of https://github.com/bids-standard/bids-schema. See
# readthedocs.yml. We do this in %%install rather than %%build because we need
# to use the generated “bst” entry point.
PYTHONDONTWRITEBYTECODE=1 PYTHONPATH='%{buildroot}%{python3_sitelib}' \
%{buildroot}%{_bindir}/bst -v export --output \
'%{buildroot}%{_datadir}/bids-schema/versions/%{bidsversion}/schema.json'
# Do not ship the tests.
sed -r -i '/\/bidsschematools\/tests(\/|$)/d' %{pyproject_files}
sed -r -i '/bidsschematools\.tests(\.|$)/d' '%{_pyproject_modules}'
@ -233,16 +230,35 @@ ln -s "${PWD}/bids-examples-%{examples_commit}" \
tools/schemacode/tests/data/bids-examples
ln -s "${PWD}/bids-error-examples-%{error_examples_commit}" \
tools/schemacode/tests/data/bids-error-examples
# We also link the actual schema data, as unbundled and installed in the
# buildroot.
rm -rvf 'tools/schemacode/src/bidsschematools/data'
ln -s '%{buildroot}%{python3_sitelib}/bidsschematools/data' \
'tools/schemacode/src/bidsschematools/data'
# All of this manipulation is OK here in %%check because we already built the
# wheel and installed the library to the buildroot.
%if %{without check_jsonschema}
k="${k-}${k+ and }not test_valid_schema_with_check_jsonschema"
%endif
%pytest ${ignore-} -k "${k-}" -v
# https://docs.fedoraproject.org/en-US/packaging-guidelines/Directory_Replacement/#_scriptlet_to_replace_a_directory
# Added for F42; can be removed in F45 (upgrade path for three releases)
%pretrans -p <lua> -n python3-bidsschematools
path = "%{python3_sitelib}/bidsschematools/data/schema"
st = posix.stat(path)
if st and st.type == "directory" then
status = os.rename(path, path .. ".rpmmoved")
if not status then
suffix = 0
while not status do
suffix = suffix + 1
status = os.rename(path .. ".rpmmoved", path .. ".rpmmoved." .. suffix)
end
os.rename(path, path .. ".rpmmoved")
end
end
%files
%license LICENSE
%doc %dir %{_pkgdocdir}
@ -269,10 +285,15 @@ k="${k-}${k+ and }not test_valid_schema_with_check_jsonschema"
%files -n python3-bidsschematools -f %{pyproject_files}
%license tools/schemacode/LICENSE
%doc %dir %{_docdir}/python3-bidsschematools
%doc %{_docdir}/python3-bidsschematools/README.md
# Symbolic link into the appropriate directory in the base package:
%{python3_sitelib}/bidsschematools/data/schema
# https://docs.fedoraproject.org/en-US/packaging-guidelines/Directory_Replacement/#_scriptlet_to_replace_a_directory
# Added for F42; can be removed in F45 (upgrade path for three releases)
%ghost %{python3_sitelib}/bidsschematools/data/schema.rpmmoved
%{_bindir}/bst
%{_mandir}/man1/bst.1*
%{_mandir}/man1/bst-*.1*

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@ -1,3 +1,3 @@
SHA512 (bids-specification-schema-1.1.5.tar.gz) = 4bc394cff2f7cd966ca570609ecc3fc99996ff056c74e8bde482402f8e221bf863d9e90ce2a0383de64dc1102b671f79d9cb1232f4df7647b0d5d0992a01c4e1
SHA512 (bids-examples-c68d3afa54b3271d4718de7abf6cb6d5e603fceb-filtered.tar.zst) = dc269c261c2d9dda8ab66e3670575c2337d9c6d4d2dbc8ed3c8b2d119dcfd726fb75b8411cfd63b5d956ede7d94de74b9c4bcc157370b1d2b2a1d94ecab2dc9b
SHA512 (bids-error-examples-ac0a2f58f34ce284847dde5bd3b90d7ea048c141-filtered.tar.zst) = d6ce411fbc24259a6587cea189b7eb043e1267cee085346a0bda125a31a9081a518772e3b5f07ed3cae182cd6a2422eaa66d6ff5f5018dfa4212fe90d7365a12
SHA512 (bids-specification-schema-1.0.5.tar.gz) = a140e0f22a5ad857e6a6678ab2a9dfb699fd4db0f9492ba3f97d373a31c2488201665f02ffe5d57cc0d6c269f0f4ff844a72fea0169d2afcc5d2cdeee8fdf3eb
SHA512 (bids-examples-f21306744fd57bfd5c8e8e91d907fa8448f9eca5-filtered.tar.zst) = 94afdcfe08c9bfa5b764fd21d14695a0c34cb66310dcb3332b3976b9bcfe431dc2d5101eda7bd70827be708e3054cdfb933bfbaa473ae55645590e2c4f14e38d
SHA512 (bids-error-examples-ac0a2f58f34ce284847dde5bd3b90d7ea048c141-filtered.tar.zst) = b8281f6120731d72d2271869414f88edb94c7a54dd732e689cf331f011a4caaad7372556cee1b58d9a91ee1ee3644933d59cbad304a3b291d846610a7897af8e