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6 changed files with 584 additions and 188 deletions
4
.gitignore
vendored
4
.gitignore
vendored
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@ -1,2 +1,2 @@
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/bliss-*.zip
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/bliss-0.72.zip
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/*.tar.gz
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/bliss-0.73.zip
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@ -1,5 +0,0 @@
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# bliss
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Bliss is an open source tool for computing automorphism groups and
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canonical forms of graphs. It has both a command line user interface as
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well as C++ and C programming language APIs.
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471
bliss-error.patch
Normal file
471
bliss-error.patch
Normal file
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@ -0,0 +1,471 @@
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--- ./bliss.cc.orig 2015-09-01 10:23:10.000000000 -0600
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+++ ./bliss.cc 2015-09-04 15:04:09.946602735 -0600
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@@ -276,13 +276,16 @@ main(const int argc, const char** argv)
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if(opt_canonize == false)
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{
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/* No canonical labeling, only automorphism group */
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- g->find_automorphisms(stats, &report_aut, stdout);
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+ if (!g->find_automorphisms(stats, &report_aut, stdout))
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+ exit(1);
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}
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else
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{
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/* Canonical labeling and automorphism group */
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const unsigned int* cl = g->canonical_form(stats, &report_aut, stdout);
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+ if (!cl)
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+ exit(1);
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fprintf(stdout, "Canonical labeling: ");
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bliss::print_permutation(stdout, g->get_nof_vertices(), cl, 1);
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fprintf(stdout, "\n");
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@@ -290,6 +293,8 @@ main(const int argc, const char** argv)
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if(opt_output_can_file)
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{
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bliss::AbstractGraph* cf = g->permute(cl);
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+ if (!cf)
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+ exit(1);
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FILE* const fp = fopen(opt_output_can_file, "w");
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if(!fp)
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_fatal("Cannot open '%s' for outputting the canonical form, aborting", opt_output_can_file);
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--- ./bliss_C.cc.orig 2015-09-01 10:23:10.000000000 -0600
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+++ ./bliss_C.cc 2015-09-04 15:04:09.945602814 -0600
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@@ -131,7 +131,7 @@ BlissGraph *bliss_permute(BlissGraph *gr
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}
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extern "C"
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-void
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+int
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bliss_find_automorphisms(BlissGraph *graph,
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void (*hook)(void *user_param,
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unsigned int n,
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@@ -142,7 +142,8 @@ bliss_find_automorphisms(BlissGraph *gra
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bliss::Stats s;
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assert(graph);
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assert(graph->g);
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- graph->g->find_automorphisms(s, hook, hook_user_param);
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+ if (!graph->g->find_automorphisms(s, hook, hook_user_param))
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+ return 0;
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if(stats)
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{
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@@ -154,6 +155,7 @@ bliss_find_automorphisms(BlissGraph *gra
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stats->nof_generators = s.get_nof_generators();
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stats->max_level = s.get_max_level();
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}
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+ return 1;
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}
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@@ -173,7 +175,7 @@ bliss_find_canonical_labeling(BlissGraph
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canonical_labeling = graph->g->canonical_form(s, hook, hook_user_param);
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- if(stats)
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+ if(canonical_labeling && stats)
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{
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stats->group_size_approx = s.get_group_size_approx();
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stats->nof_nodes = s.get_nof_nodes();
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--- ./bliss_C.h.orig 2015-09-01 10:23:10.000000000 -0600
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+++ ./bliss_C.h 2015-09-04 15:04:09.947602656 -0600
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@@ -156,6 +156,7 @@ unsigned int bliss_hash(BlissGraph *grap
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* The argument \a perm should be an array of
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* N=bliss::bliss_get_nof_vertices(\a graph) elements describing
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* a bijection on {0,...,N-1}.
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+ * Returns NULL if insufficient memory or internal error.
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*/
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BlissGraph *bliss_permute(BlissGraph *graph, const unsigned int *perm);
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@@ -174,8 +175,9 @@ BlissGraph *bliss_permute(BlissGraph *gr
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* if you want to use the automorphism later, you have to take a copy of it.
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* Do not call bliss_* functions in the hook.
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* If \a stats is non-null, then some search statistics are copied there.
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+ * \return nonzero if successful, zero if insufficient memory or internal error
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*/
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-void
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+int
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bliss_find_automorphisms(BlissGraph *graph,
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void (*hook)(void *user_param,
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unsigned int N,
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@@ -194,6 +196,7 @@ bliss_find_automorphisms(BlissGraph *gra
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* then bliss_permute() with the returned canonical labeling.
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* Note that the computed canonical version may depend on the applied version
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* of bliss.
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+ * Returns NULL if insufficient memory or internal error.
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*/
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const unsigned int *
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bliss_find_canonical_labeling(BlissGraph *graph,
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--- ./defs.cc.orig 2015-09-01 10:23:12.000000000 -0600
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+++ ./defs.cc 2015-09-04 15:04:09.947602656 -0600
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@@ -32,7 +32,6 @@ fatal_error(const char* fmt, ...)
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vfprintf(stderr, fmt, ap);
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fprintf(stderr, "\nAborting!\n");
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va_end(ap);
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- exit(1);
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}
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}
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--- ./graph.cc.orig 2015-09-01 10:23:10.000000000 -0600
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+++ ./graph.cc 2015-09-04 15:04:09.927604245 -0600
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@@ -34,7 +34,10 @@
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namespace bliss {
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#define _INTERNAL_ERROR() fatal_error("%s:%d: internal error",__FILE__,__LINE__)
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-#define _OUT_OF_MEMORY() fatal_error("%s:%d: out of memory",__FILE__,__LINE__)
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+#define _OUT_OF_MEMORY(label) do { \
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+ fatal_error("%s:%d: out of memory",__FILE__,__LINE__); \
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+ goto label; \
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+ } while (0)
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/*-------------------------------------------------------------------------
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*
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@@ -279,20 +282,6 @@ AbstractGraph::reset_permutation(unsigne
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*perm = i;
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}
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-bool
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-AbstractGraph::is_automorphism(unsigned int* const perm)
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-{
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- _INTERNAL_ERROR();
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- return false;
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-}
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-
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-bool
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-AbstractGraph::is_automorphism(const std::vector<unsigned int>& perm) const
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-{
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- _INTERNAL_ERROR();
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- return false;
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-}
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-
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@@ -618,7 +607,7 @@ typedef struct {
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} PathInfo;
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-void
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+bool
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AbstractGraph::search(const bool canonical, Stats& stats)
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{
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const unsigned int N = get_nof_vertices();
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@@ -658,7 +647,7 @@ AbstractGraph::search(const bool canonic
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if(N == 0)
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{
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/* Nothing to do, return... */
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- return;
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+ return true;
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}
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/* Initialize the partition ... */
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@@ -696,10 +685,10 @@ AbstractGraph::search(const bool canonic
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*/
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if(first_path_labeling) free(first_path_labeling);
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first_path_labeling = (unsigned int*)calloc(N, sizeof(unsigned int));
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- if(!first_path_labeling) _OUT_OF_MEMORY();
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+ if(!first_path_labeling) _OUT_OF_MEMORY(oom1);
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if(best_path_labeling) free(best_path_labeling);
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best_path_labeling = (unsigned int*)calloc(N, sizeof(unsigned int));
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- if(!best_path_labeling) _OUT_OF_MEMORY();
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+ if(!best_path_labeling) _OUT_OF_MEMORY(oom2);
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/*
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* Is the initial partition discrete?
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@@ -710,7 +699,7 @@ AbstractGraph::search(const bool canonic
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update_labeling(best_path_labeling);
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/* Update statistics */
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stats.nof_leaf_nodes = 1;
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- return;
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+ return true;
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}
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/*
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@@ -718,20 +707,39 @@ AbstractGraph::search(const bool canonic
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*/
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if(first_path_labeling_inv) free(first_path_labeling_inv);
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first_path_labeling_inv = (unsigned int*)calloc(N, sizeof(unsigned int));
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- if(!first_path_labeling_inv) _OUT_OF_MEMORY();
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+ if(!first_path_labeling_inv) _OUT_OF_MEMORY(oom3);
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if(best_path_labeling_inv) free(best_path_labeling_inv);
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best_path_labeling_inv = (unsigned int*)calloc(N, sizeof(unsigned int));
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|
- if(!best_path_labeling_inv) _OUT_OF_MEMORY();
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+ if(!best_path_labeling_inv) _OUT_OF_MEMORY(oom4);
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|
/*
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* Allocate space for the automorphisms
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|
*/
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if(first_path_automorphism) free(first_path_automorphism);
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first_path_automorphism = (unsigned int*)malloc(N * sizeof(unsigned int));
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- if(!first_path_automorphism) _OUT_OF_MEMORY();
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|
+ if(!first_path_automorphism) _OUT_OF_MEMORY(oom5);
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|
if(best_path_automorphism) free(best_path_automorphism);
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|
best_path_automorphism = (unsigned int*)malloc(N * sizeof(unsigned int));
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|
- if(!best_path_automorphism) _OUT_OF_MEMORY();
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|
+ if(!best_path_automorphism) {
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||||||
|
+ _OUT_OF_MEMORY(oom6);
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||||||
|
+ oom6:
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|
+ free(first_path_automorphism);
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|
+ first_path_automorphism = NULL;
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||||||
|
+ oom5:
|
||||||
|
+ free(best_path_labeling_inv);
|
||||||
|
+ best_path_labeling_inv = NULL;
|
||||||
|
+ oom4:
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||||||
|
+ free(first_path_labeling_inv);
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||||||
|
+ first_path_labeling_inv = NULL;
|
||||||
|
+ oom3:
|
||||||
|
+ free(best_path_labeling);
|
||||||
|
+ best_path_labeling = NULL;
|
||||||
|
+ oom2:
|
||||||
|
+ free(first_path_labeling);
|
||||||
|
+ first_path_labeling = NULL;
|
||||||
|
+ oom1:
|
||||||
|
+ return false;
|
||||||
|
+ }
|
||||||
|
|
||||||
|
/*
|
||||||
|
* Initialize orbit information so that all vertices are in their own orbits
|
||||||
|
@@ -1203,8 +1211,10 @@ AbstractGraph::search(const bool canonic
|
||||||
|
|
||||||
|
#if defined(BLISS_VERIFY_EQUITABLEDNESS)
|
||||||
|
/* The new partition should be equitable */
|
||||||
|
- if(!is_equitable())
|
||||||
|
+ if(!is_equitable()) {
|
||||||
|
fatal_error("consistency check failed - partition after refinement is not equitable");
|
||||||
|
+ return false;
|
||||||
|
+ }
|
||||||
|
#endif
|
||||||
|
|
||||||
|
/*
|
||||||
|
@@ -1596,8 +1606,10 @@ AbstractGraph::search(const bool canonic
|
||||||
|
|
||||||
|
#if defined(BLISS_VERIFY_AUTOMORPHISMS)
|
||||||
|
/* Verify that it really is an automorphism */
|
||||||
|
- if(!is_automorphism(best_path_automorphism))
|
||||||
|
+ if(!is_automorphism(best_path_automorphism)) {
|
||||||
|
fatal_error("Best path automorhism validation check failed");
|
||||||
|
+ return false;
|
||||||
|
+ }
|
||||||
|
#endif
|
||||||
|
|
||||||
|
unsigned int gca_level_with_first = 0;
|
||||||
|
@@ -1664,6 +1676,7 @@ AbstractGraph::search(const bool canonic
|
||||||
|
|
||||||
|
|
||||||
|
_INTERNAL_ERROR();
|
||||||
|
+ return false;
|
||||||
|
|
||||||
|
|
||||||
|
handle_first_path_automorphism:
|
||||||
|
@@ -1699,8 +1712,10 @@ AbstractGraph::search(const bool canonic
|
||||||
|
|
||||||
|
#if defined(BLISS_VERIFY_AUTOMORPHISMS)
|
||||||
|
/* Verify that it really is an automorphism */
|
||||||
|
- if(!is_automorphism(first_path_automorphism))
|
||||||
|
+ if(!is_automorphism(first_path_automorphism)) {
|
||||||
|
fatal_error("First path automorphism validation check failed");
|
||||||
|
+ return false;
|
||||||
|
+ }
|
||||||
|
#endif
|
||||||
|
|
||||||
|
if(opt_use_long_prune)
|
||||||
|
@@ -1747,12 +1762,13 @@ AbstractGraph::search(const bool canonic
|
||||||
|
/* Release component recursion data in partition */
|
||||||
|
if(opt_use_comprec)
|
||||||
|
p.cr_free();
|
||||||
|
+ return true;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
-void
|
||||||
|
+bool
|
||||||
|
AbstractGraph::find_automorphisms(Stats& stats,
|
||||||
|
void (*hook)(void *user_param,
|
||||||
|
unsigned int n,
|
||||||
|
@@ -1762,7 +1778,8 @@ AbstractGraph::find_automorphisms(Stats&
|
||||||
|
report_hook = hook;
|
||||||
|
report_user_param = user_param;
|
||||||
|
|
||||||
|
- search(false, stats);
|
||||||
|
+ if (!search(false, stats))
|
||||||
|
+ return false;
|
||||||
|
|
||||||
|
if(first_path_labeling)
|
||||||
|
{
|
||||||
|
@@ -1774,6 +1791,7 @@ AbstractGraph::find_automorphisms(Stats&
|
||||||
|
free(best_path_labeling);
|
||||||
|
best_path_labeling = 0;
|
||||||
|
}
|
||||||
|
+ return true;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
@@ -1788,7 +1806,8 @@ AbstractGraph::canonical_form(Stats& sta
|
||||||
|
report_hook = hook;
|
||||||
|
report_user_param = user_param;
|
||||||
|
|
||||||
|
- search(true, stats);
|
||||||
|
+ if (!search(true, stats))
|
||||||
|
+ return NULL;
|
||||||
|
|
||||||
|
return best_path_labeling;
|
||||||
|
}
|
||||||
|
@@ -3479,15 +3498,17 @@ Digraph::initialize_certificate()
|
||||||
|
* Check whether perm is an automorphism.
|
||||||
|
* Slow, mainly for debugging and validation purposes.
|
||||||
|
*/
|
||||||
|
-bool
|
||||||
|
+int
|
||||||
|
Digraph::is_automorphism(unsigned int* const perm)
|
||||||
|
{
|
||||||
|
std::set<unsigned int, std::less<unsigned int> > edges1;
|
||||||
|
std::set<unsigned int, std::less<unsigned int> > edges2;
|
||||||
|
|
||||||
|
#if defined(BLISS_CONSISTENCY_CHECKS)
|
||||||
|
- if(!is_permutation(get_nof_vertices(), perm))
|
||||||
|
+ if(!is_permutation(get_nof_vertices(), perm)) {
|
||||||
|
_INTERNAL_ERROR();
|
||||||
|
+ return -1;
|
||||||
|
+ }
|
||||||
|
#endif
|
||||||
|
|
||||||
|
for(unsigned int i = 0; i < get_nof_vertices(); i++)
|
||||||
|
@@ -3506,7 +3527,7 @@ Digraph::is_automorphism(unsigned int* c
|
||||||
|
ei++)
|
||||||
|
edges2.insert(*ei);
|
||||||
|
if(!(edges1 == edges2))
|
||||||
|
- return false;
|
||||||
|
+ return 0;
|
||||||
|
|
||||||
|
edges1.clear();
|
||||||
|
for(std::vector<unsigned int>::iterator ei = v1.edges_out.begin();
|
||||||
|
@@ -3519,10 +3540,10 @@ Digraph::is_automorphism(unsigned int* c
|
||||||
|
ei++)
|
||||||
|
edges2.insert(*ei);
|
||||||
|
if(!(edges1 == edges2))
|
||||||
|
- return false;
|
||||||
|
+ return 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
- return true;
|
||||||
|
+ return 1;
|
||||||
|
}
|
||||||
|
|
||||||
|
bool
|
||||||
|
@@ -4337,8 +4358,10 @@ Graph*
|
||||||
|
Graph::permute(const unsigned int* perm) const
|
||||||
|
{
|
||||||
|
#if defined(BLISS_CONSISTENCY_CHECKS)
|
||||||
|
- if(!is_permutation(get_nof_vertices(), perm))
|
||||||
|
+ if(!is_permutation(get_nof_vertices(), perm)) {
|
||||||
|
_INTERNAL_ERROR();
|
||||||
|
+ return NULL;
|
||||||
|
+ }
|
||||||
|
#endif
|
||||||
|
|
||||||
|
Graph* const g = new Graph(get_nof_vertices());
|
||||||
|
@@ -5278,15 +5301,17 @@ Graph::initialize_certificate()
|
||||||
|
*
|
||||||
|
*-------------------------------------------------------------------------*/
|
||||||
|
|
||||||
|
-bool
|
||||||
|
+int
|
||||||
|
Graph::is_automorphism(unsigned int* const perm)
|
||||||
|
{
|
||||||
|
std::set<unsigned int, std::less<unsigned int> > edges1;
|
||||||
|
std::set<unsigned int, std::less<unsigned int> > edges2;
|
||||||
|
|
||||||
|
#if defined(BLISS_CONSISTENCY_CHECKS)
|
||||||
|
- if(!is_permutation(get_nof_vertices(), perm))
|
||||||
|
+ if(!is_permutation(get_nof_vertices(), perm)) {
|
||||||
|
_INTERNAL_ERROR();
|
||||||
|
+ return -1;
|
||||||
|
+ }
|
||||||
|
#endif
|
||||||
|
|
||||||
|
for(unsigned int i = 0; i < get_nof_vertices(); i++)
|
||||||
|
@@ -5306,10 +5331,10 @@ Graph::is_automorphism(unsigned int* con
|
||||||
|
edges2.insert(*ei);
|
||||||
|
|
||||||
|
if(!(edges1 == edges2))
|
||||||
|
- return false;
|
||||||
|
+ return 0;
|
||||||
|
}
|
||||||
|
|
||||||
|
- return true;
|
||||||
|
+ return 1;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
--- ./graph.hh.orig 2015-09-01 10:23:10.000000000 -0600
|
||||||
|
+++ ./graph.hh 2015-09-04 15:09:17.261182632 -0600
|
||||||
|
@@ -159,7 +159,7 @@ public:
|
||||||
|
* Check whether \a perm is an automorphism of this graph.
|
||||||
|
* Unoptimized, mainly for debugging purposes.
|
||||||
|
*/
|
||||||
|
- virtual bool is_automorphism(const std::vector<unsigned int>& perm) const;
|
||||||
|
+ virtual bool is_automorphism(const std::vector<unsigned int>& perm) const = 0;
|
||||||
|
|
||||||
|
|
||||||
|
/** Activate/deactivate failure recording.
|
||||||
|
@@ -211,8 +211,10 @@ public:
|
||||||
|
* if you want to use the automorphism later, you have to take a copy of it.
|
||||||
|
* Do not call any member functions in the hook.
|
||||||
|
* The search statistics are copied in \a stats.
|
||||||
|
+ * \return true if successful, false if insufficient memory to search or
|
||||||
|
+ * other internal error.
|
||||||
|
*/
|
||||||
|
- void find_automorphisms(Stats& stats,
|
||||||
|
+ bool find_automorphisms(Stats& stats,
|
||||||
|
void (*hook)(void* user_param,
|
||||||
|
unsigned int n,
|
||||||
|
const unsigned int* aut),
|
||||||
|
@@ -232,6 +234,8 @@ public:
|
||||||
|
* Note that the computed canonical version may depend on the applied version
|
||||||
|
* of bliss as well as on some other options (for instance, the splitting
|
||||||
|
* heuristic selected with bliss::Graph::set_splitting_heuristic()).
|
||||||
|
+ * This function returns NULL if there is insufficient memory, or another
|
||||||
|
+ * internal error occurs.
|
||||||
|
*/
|
||||||
|
const unsigned int* canonical_form(Stats& stats,
|
||||||
|
void (*hook)(void* user_param,
|
||||||
|
@@ -436,7 +440,7 @@ protected:
|
||||||
|
void reset_permutation(unsigned int *perm);
|
||||||
|
|
||||||
|
/* Mainly for debugging purposes */
|
||||||
|
- virtual bool is_automorphism(unsigned int* const perm);
|
||||||
|
+ virtual int is_automorphism(unsigned int* const perm) = 0;
|
||||||
|
|
||||||
|
std::vector<unsigned int> certificate_current_path;
|
||||||
|
std::vector<unsigned int> certificate_first_path;
|
||||||
|
@@ -450,7 +454,11 @@ protected:
|
||||||
|
virtual Partition::Cell* find_next_cell_to_be_splitted(Partition::Cell *cell) = 0;
|
||||||
|
|
||||||
|
|
||||||
|
- void search(const bool canonical, Stats &stats);
|
||||||
|
+ /**
|
||||||
|
+ * \return true if successful, false if insufficient memory to complete or
|
||||||
|
+ * other internal error
|
||||||
|
+ */
|
||||||
|
+ bool search(const bool canonical, Stats &stats);
|
||||||
|
|
||||||
|
|
||||||
|
void (*report_hook)(void *user_param,
|
||||||
|
@@ -634,7 +642,7 @@ protected:
|
||||||
|
|
||||||
|
void initialize_certificate();
|
||||||
|
|
||||||
|
- bool is_automorphism(unsigned int* const perm);
|
||||||
|
+ int is_automorphism(unsigned int* const perm);
|
||||||
|
|
||||||
|
|
||||||
|
bool nucr_find_first_component(const unsigned int level);
|
||||||
|
@@ -875,7 +883,7 @@ protected:
|
||||||
|
|
||||||
|
void initialize_certificate();
|
||||||
|
|
||||||
|
- bool is_automorphism(unsigned int* const perm);
|
||||||
|
+ int is_automorphism(unsigned int* const perm);
|
||||||
|
|
||||||
|
void sort_edges();
|
||||||
|
|
||||||
|
|
@ -1,25 +1,23 @@
|
||||||
--- include/bliss/abstractgraph.hh.orig 2022-06-17 07:24:11.000000000 -0600
|
--- ./graph.cc.orig 2015-09-04 15:04:09.927604245 -0600
|
||||||
+++ include/bliss/abstractgraph.hh 2023-02-01 09:32:06.289384074 -0700
|
+++ ./graph.cc 2015-09-04 15:09:46.999819514 -0600
|
||||||
@@ -493,10 +493,14 @@ protected:
|
@@ -597,16 +597,6 @@ public:
|
||||||
*/
|
|
||||||
unsigned int cr_component_elements;
|
|
||||||
|
|
||||||
+ std::vector<PathInfo> first_path_info;
|
|
||||||
|
|
||||||
+public:
|
|
||||||
|
|
||||||
-
|
|
||||||
-
|
|
||||||
+ /**
|
|
||||||
+ * Get an information vector about the first path.
|
|
||||||
+ */
|
|
||||||
+ std::vector<PathInfo> get_first_path_info() { return first_path_info; }
|
|
||||||
|
|
||||||
};
|
};
|
||||||
|
|
||||||
--- src/abstractgraph.cc.orig 2022-06-17 07:24:11.000000000 -0600
|
|
||||||
+++ src/abstractgraph.cc 2023-02-01 09:31:50.377694086 -0700
|
-
|
||||||
@@ -745,7 +745,6 @@ AbstractGraph::search(const bool canonic
|
-
|
||||||
|
-typedef struct {
|
||||||
|
- unsigned int splitting_element;
|
||||||
|
- unsigned int certificate_index;
|
||||||
|
- unsigned int subcertificate_length;
|
||||||
|
- UintSeqHash eqref_hash;
|
||||||
|
-} PathInfo;
|
||||||
|
-
|
||||||
|
-
|
||||||
|
bool
|
||||||
|
AbstractGraph::search(const bool canonical, Stats& stats)
|
||||||
|
{
|
||||||
|
@@ -753,7 +743,6 @@ AbstractGraph::search(const bool canonic
|
||||||
initialize_certificate();
|
initialize_certificate();
|
||||||
|
|
||||||
std::vector<TreeNode> search_stack;
|
std::vector<TreeNode> search_stack;
|
||||||
|
|
@ -27,9 +25,7 @@
|
||||||
std::vector<PathInfo> best_path_info;
|
std::vector<PathInfo> best_path_info;
|
||||||
|
|
||||||
search_stack.clear();
|
search_stack.clear();
|
||||||
--- src/graph.cc.orig 2022-06-17 07:24:11.000000000 -0600
|
@@ -5477,7 +5466,7 @@ Graph::nucr_find_first_component(const u
|
||||||
+++ src/graph.cc 2023-02-01 09:32:06.290384054 -0700
|
|
||||||
@@ -1551,7 +1551,7 @@ Graph::nucr_find_first_component(const u
|
|
||||||
component.clear();
|
component.clear();
|
||||||
component_elements = 0;
|
component_elements = 0;
|
||||||
sh_return = 0;
|
sh_return = 0;
|
||||||
|
|
@ -38,3 +34,41 @@
|
||||||
unsigned int sh_size = 0;
|
unsigned int sh_size = 0;
|
||||||
unsigned int sh_nuconn = 0;
|
unsigned int sh_nuconn = 0;
|
||||||
|
|
||||||
|
--- ./graph.hh.orig 2015-09-04 15:09:17.261182632 -0600
|
||||||
|
+++ ./graph.hh 2015-09-04 15:09:47.001819355 -0600
|
||||||
|
@@ -109,9 +109,12 @@ public:
|
||||||
|
unsigned long int get_max_level() const {return max_level;}
|
||||||
|
};
|
||||||
|
|
||||||
|
-
|
||||||
|
-
|
||||||
|
-
|
||||||
|
+typedef struct {
|
||||||
|
+ unsigned int splitting_element;
|
||||||
|
+ unsigned int certificate_index;
|
||||||
|
+ unsigned int subcertificate_length;
|
||||||
|
+ UintSeqHash eqref_hash;
|
||||||
|
+} PathInfo;
|
||||||
|
|
||||||
|
|
||||||
|
/**
|
||||||
|
@@ -524,7 +527,7 @@ protected:
|
||||||
|
*/
|
||||||
|
unsigned int cr_component_elements;
|
||||||
|
|
||||||
|
-
|
||||||
|
+ std::vector<PathInfo> first_path_info;
|
||||||
|
|
||||||
|
|
||||||
|
};
|
||||||
|
@@ -756,6 +759,10 @@ public:
|
||||||
|
void set_splitting_heuristic(const SplittingHeuristic shs) {sh = shs; }
|
||||||
|
|
||||||
|
|
||||||
|
+ /**
|
||||||
|
+ * Get an information vector about the first path.
|
||||||
|
+ */
|
||||||
|
+ std::vector<PathInfo> get_first_path_info() { return first_path_info; }
|
||||||
|
};
|
||||||
|
|
||||||
|
|
||||||
|
|
|
||||||
210
bliss.spec
210
bliss.spec
|
|
@ -1,112 +1,95 @@
|
||||||
%global giturl https://github.com/scipopt/Bliss
|
|
||||||
|
|
||||||
Name: bliss
|
Name: bliss
|
||||||
Version: 0.77
|
Version: 0.73
|
||||||
Release: 11%{?dist}
|
Release: 1%{?dist}
|
||||||
Summary: Compute automorphism groups and canonical labelings of graphs
|
Summary: Compute automorphism groups and canonical labelings of graphs
|
||||||
|
|
||||||
License: LGPL-3.0-only
|
License: LGPLv3
|
||||||
URL: https://users.aalto.fi/~tjunttil/bliss/
|
URL: http://www.tcs.hut.fi/Software/bliss/
|
||||||
VCS: git:%{giturl}.git
|
Source0: http://www.tcs.hut.fi/Software/bliss/%{name}-%{version}.zip
|
||||||
Source0: %{giturl}/archive/v%{version}/Bliss-%{version}.tar.gz
|
|
||||||
# Man page written by Jerry James using text borrowed from the sources.
|
# Man page written by Jerry James using text borrowed from the sources.
|
||||||
# The man page therefore has the same copyright and license as the sources.
|
# The man page therefore has the same copyright and license as the sources.
|
||||||
Source1: bliss.1
|
Source1: bliss.1
|
||||||
# Patch from Thomas Rehn, sent upstream 28 Oct 2011. Fix one bug and add one
|
# Sent upstream 28 Oct 2011. Don't call exit() in library code.
|
||||||
|
Patch0: bliss-error.patch
|
||||||
|
# Patch from Thomas Rehn, also sent upstream. Fix one bug and add one
|
||||||
# performance enhancement.
|
# performance enhancement.
|
||||||
Patch: bliss-rehn.patch
|
Patch1: bliss-rehn.patch
|
||||||
|
|
||||||
# See https://fedoraproject.org/wiki/Changes/EncourageI686LeafRemoval
|
|
||||||
ExcludeArch: %{ix86}
|
|
||||||
|
|
||||||
BuildRequires: cmake
|
|
||||||
BuildRequires: doxygen
|
BuildRequires: doxygen
|
||||||
BuildRequires: gcc-c++
|
|
||||||
BuildRequires: gmp-devel
|
BuildRequires: gmp-devel
|
||||||
BuildRequires: make
|
|
||||||
|
|
||||||
Requires: %{name}-libs%{?_isa} = %{version}-%{release}
|
Requires: %{name}-libs%{?_isa} = %{version}-%{release}
|
||||||
|
|
||||||
|
%global sover %(echo %{version} | cut -d. -f1)
|
||||||
|
|
||||||
%description
|
%description
|
||||||
Bliss is an open source tool for computing automorphism groups and canonical
|
Bliss is an open source tool for computing automorphism groups and
|
||||||
forms of graphs. It has both a command line user interface as well as C++ and
|
canonical forms of graphs. It has both a command line user interface as
|
||||||
C programming language APIs.
|
well as C++ and C programming language APIs.
|
||||||
|
|
||||||
%package devel
|
%package devel
|
||||||
# The content is LGPL-3.0-only. Other licenses are due to files installed by
|
|
||||||
# doxygen.
|
|
||||||
# html/bc_s.png: GPL-1.0-or-later
|
|
||||||
# html/bdwn.png: GPL-1.0-or-later
|
|
||||||
# html/closed.png: GPL-1.0-or-later
|
|
||||||
# html/doc.png: GPL-1.0-or-later
|
|
||||||
# html/doxygen.css: GPL-1.0-or-later
|
|
||||||
# html/doxygen.svg: GPL-1.0-or-later
|
|
||||||
# html/dynsections.js: MIT
|
|
||||||
# html/folderclosed.png: GPL-1.0-or-later
|
|
||||||
# html/folderopen.png: GPL-1.0-or-later
|
|
||||||
# html/jquery.js: MIT
|
|
||||||
# html/menu.js: MIT
|
|
||||||
# html/menudata.js: MIT
|
|
||||||
# html/nav_f.png: GPL-1.0-or-later
|
|
||||||
# html/nav_g.png: GPL-1.0-or-later
|
|
||||||
# html/nav_h.png: GPL-1.0-or-later
|
|
||||||
# html/open.png: GPL-1.0-or-later
|
|
||||||
# html/splitbar.png: GPL-1.0-or-later
|
|
||||||
# html/sync_off.png: GPL-1.0-or-later
|
|
||||||
# html/sync_on.png: GPL-1.0-or-later
|
|
||||||
# html/tab_a.png: GPL-1.0-or-later
|
|
||||||
# html/tab_b.png: GPL-1.0-or-later
|
|
||||||
# html/tab_h.png: GPL-1.0-or-later
|
|
||||||
# html/tab_s.png: GPL-1.0-or-later
|
|
||||||
# html/tabs.css: GPL-1.0-or-later
|
|
||||||
License: LGPL-3.0-only AND MIT AND GPL-1.0-or-later
|
|
||||||
Summary: Headers and library files for developing with bliss
|
Summary: Headers and library files for developing with bliss
|
||||||
Requires: %{name}-libs%{?_isa} = %{version}-%{release}
|
Requires: %{name}-libs%{?_isa} = %{version}-%{release}
|
||||||
Requires: gmp-devel%{?_isa}
|
Requires: gmp-devel%{?_isa}
|
||||||
|
Provides: bundled(jquery)
|
||||||
|
|
||||||
%description devel
|
%description devel
|
||||||
Headers and library files needed to develop applications that use the bliss
|
Headers and library files needed to develop applications that use the
|
||||||
library.
|
bliss library.
|
||||||
|
|
||||||
%package libs
|
%package libs
|
||||||
Summary: Compute automorphism groups and canonical labelings of graphs
|
Summary: Compute automorphism groups and canonical labelings of graphs
|
||||||
|
|
||||||
%description libs
|
%description libs
|
||||||
A command-line bliss tool to access the functionality of the bliss library.
|
A command-line bliss tool to access the functionality of the bliss
|
||||||
|
library.
|
||||||
|
|
||||||
%prep
|
%prep
|
||||||
%autosetup -n Bliss-%{version} -p0
|
%setup -q
|
||||||
|
%patch0
|
||||||
%conf
|
%patch1
|
||||||
# Do not override Fedora build flags. The last sagemath version added an
|
|
||||||
# soname. Duplicate it for compatibility. Link the library with libgmp.
|
|
||||||
# Hidden symbols hide ALL symbols, meaning we can't use the library.
|
|
||||||
sed -e 's/ -O3//' \
|
|
||||||
-e '/POSITION_INDEPENDENT/a\ \ VERSION 2.0.0 SOVERSION 2' \
|
|
||||||
-e '/^install($/itarget_link_libraries(libbliss ${GMP_LIBRARIES})' \
|
|
||||||
-e '/VISIBILITY/d' \
|
|
||||||
-i CMakeLists.txt
|
|
||||||
|
|
||||||
# Fix installation directories
|
|
||||||
if [ "%{_lib}" != "lib" ]; then
|
|
||||||
sed -i 's,\(DESTINATION \)lib,\1%{_lib},' CMakeLists.txt
|
|
||||||
fi
|
|
||||||
|
|
||||||
%build
|
%build
|
||||||
%cmake -DUSE_GMP:BOOL=ON
|
# The Makefile creates a static library, so we roll our own shared library
|
||||||
%cmake_build
|
# here instead. Also, avoid an unused direct dependency on libm.
|
||||||
|
g++ $RPM_OPT_FLAGS -DBLISS_USE_GMP -fPIC -shared -o libbliss.so.%{version} \
|
||||||
|
-Wl,-soname,libbliss.so.%{sover} defs.cc graph.cc partition.cc orbit.cc \
|
||||||
|
uintseqhash.cc heap.cc timer.cc utils.cc bliss_C.cc -Wl,--as-needed \
|
||||||
|
$RPM_LD_FLAGS -lgmp
|
||||||
|
ln -s libbliss.so.%{version} libbliss.so.%{sover}
|
||||||
|
ln -s libbliss.so.%{sover} libbliss.so
|
||||||
|
|
||||||
|
# The Makefile doesn't know how to link the binary against a shared library.
|
||||||
|
# Also, once again avoid an unused direct dependency on libm.
|
||||||
|
g++ $RPM_OPT_FLAGS -DBLISS_USE_GMP -o bliss bliss.cc -Wl,--as-needed \
|
||||||
|
$RPM_LD_FLAGS -L. -lbliss -lgmp
|
||||||
|
|
||||||
# Build the documentation
|
# Build the documentation
|
||||||
doxygen
|
doxygen
|
||||||
|
|
||||||
%install
|
%install
|
||||||
%cmake_install
|
# The Makefile has no install target.
|
||||||
|
|
||||||
|
# Install the library
|
||||||
|
mkdir -p %{buildroot}%{_libdir}
|
||||||
|
cp -a libbliss.* %{buildroot}%{_libdir}
|
||||||
|
|
||||||
|
# Install the header files
|
||||||
|
mkdir -p %{buildroot}%{_includedir}/bliss
|
||||||
|
cp -p *.h *.hh %{buildroot}%{_includedir}/bliss
|
||||||
|
|
||||||
|
# Install the binary
|
||||||
|
mkdir -p %{buildroot}%{_bindir}
|
||||||
|
cp -p bliss %{buildroot}%{_bindir}
|
||||||
|
|
||||||
# Install the man page
|
# Install the man page
|
||||||
mkdir -p %{buildroot}%{_mandir}/man1
|
mkdir -p %{buildroot}%{_mandir}/man1
|
||||||
sed 's/@VERSION@/%{version}/' %{SOURCE1} > %{buildroot}%{_mandir}/man1/bliss.1
|
sed 's/@VERSION@/%{version}/' %{SOURCE1} > %{buildroot}%{_mandir}/man1/bliss.1
|
||||||
touch -r %{SOURCE1} %{buildroot}%{_mandir}/man1/bliss.1
|
touch -r %{SOURCE1} %{buildroot}%{_mandir}/man1/bliss.1
|
||||||
|
|
||||||
|
%post libs -p /sbin/ldconfig
|
||||||
|
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||||||
|
%postun libs -p /sbin/ldconfig
|
||||||
|
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||||||
%files
|
%files
|
||||||
%{_bindir}/bliss
|
%{_bindir}/bliss
|
||||||
%{_mandir}/man1/bliss.1*
|
%{_mandir}/man1/bliss.1*
|
||||||
|
|
@ -115,99 +98,12 @@ touch -r %{SOURCE1} %{buildroot}%{_mandir}/man1/bliss.1
|
||||||
%doc html
|
%doc html
|
||||||
%{_includedir}/bliss
|
%{_includedir}/bliss
|
||||||
%{_libdir}/libbliss.so
|
%{_libdir}/libbliss.so
|
||||||
%{_libdir}/cmake/Bliss/
|
|
||||||
|
|
||||||
%files libs
|
%files libs
|
||||||
%doc CHANGES.txt
|
|
||||||
%license COPYING COPYING.LESSER
|
%license COPYING COPYING.LESSER
|
||||||
%{_libdir}/libbliss.so.2{,.*}
|
%{_libdir}/libbliss.so.*
|
||||||
|
|
||||||
%changelog
|
%changelog
|
||||||
* Wed Jul 23 2025 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-11
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild
|
|
||||||
|
|
||||||
* Thu Jan 16 2025 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-10
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Jul 17 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-9
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
|
|
||||||
|
|
||||||
* Thu Feb 22 2024 Jerry James <loganjerry@gmail.com> - 0.77-8
|
|
||||||
- Build the SCIP fork
|
|
||||||
- Do not build for 32-bit x86
|
|
||||||
|
|
||||||
* Tue Jan 23 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-7
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
|
|
||||||
|
|
||||||
* Fri Jan 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-6
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Jul 19 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-5
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Jan 18 2023 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-4
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
|
|
||||||
|
|
||||||
* Mon Aug 15 2022 Jerry James <loganjerry@gmail.com> - 0.77-3
|
|
||||||
- Convert License tag to SPDX
|
|
||||||
|
|
||||||
* Wed Jul 20 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-3
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Jan 19 2022 Fedora Release Engineering <releng@fedoraproject.org> - 0.77-2
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
|
|
||||||
|
|
||||||
* Thu Oct 7 2021 Jerry James <loganjerry@gmail.com> - 0.77-1
|
|
||||||
- Version 0.77
|
|
||||||
- Switch to new upstream URLs
|
|
||||||
|
|
||||||
* Wed Jul 21 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-15
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
|
|
||||||
|
|
||||||
* Mon Jul 19 2021 Jerry James <loganjerry@gmail.com> - 0.73-15
|
|
||||||
- Switch to github URLs
|
|
||||||
|
|
||||||
* Tue Jan 26 2021 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-14
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
|
|
||||||
|
|
||||||
* Mon Dec 7 2020 Jerry James <loganjerry@gmail.com> - 0.73-13
|
|
||||||
- Switch to using the sagemath sources
|
|
||||||
- Drop -error patch; nobody else uses it and it changes the contract
|
|
||||||
|
|
||||||
* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-12
|
|
||||||
- Second attempt - Rebuilt for
|
|
||||||
https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
|
|
||||||
|
|
||||||
* Mon Jul 27 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-11
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
|
|
||||||
|
|
||||||
* Tue Jan 28 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-10
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Jul 24 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-9
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
|
|
||||||
|
|
||||||
* Thu Jan 31 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-8
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
|
|
||||||
|
|
||||||
* Thu Jul 12 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-7
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Feb 07 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-6
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-5
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-4
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
|
|
||||||
|
|
||||||
* Fri Feb 10 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-3
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
|
|
||||||
|
|
||||||
* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.73-2
|
|
||||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
|
|
||||||
|
|
||||||
* Sat Sep 19 2015 Jerry James <loganjerry@gmail.com> - 0.73-1
|
* Sat Sep 19 2015 Jerry James <loganjerry@gmail.com> - 0.73-1
|
||||||
- New upstream version
|
- New upstream version
|
||||||
|
|
||||||
|
|
|
||||||
2
sources
2
sources
|
|
@ -1 +1 @@
|
||||||
SHA512 (Bliss-0.77.tar.gz) = 27bd44695f2c1f3dfcb2f39f75fea3f61db29dfde4bef545bd14017830cd3d399b2e448ae7a703a5886bd433b22f6eddfaa99618c8714340d366d8e387ae6583
|
72f2e310786923b5c398ba0fc40b42ce bliss-0.73.zip
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue