- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild

add python_provide macro
remove hardcoded library path include

.gitignore

@@ -0,0 +1,3 @@
+/coot-0.8.7.tar.gz
+/reference-structures.tar.gz
+/coot-0.8.8.tar.gz

__init__.py

@@ -0,0 +1 @@
+# File to allow this directory to be treated as a python package.

coot-configure.ac.patch

@@ -0,0 +1,28 @@
+--- configure.ac.orig	2016-12-30 12:57:26.843081999 -0500
++++ configure.ac	2016-12-30 12:58:11.963460565 -0500
+@@ -45,11 +45,11 @@
+ 
+ # AC_PROG_INTLTOOL, no, not today.  Mac compilation problems, no perl/ XML or something.
+ # BL says Lets do some testing and use old style if needed
+-AC_MSG_CHECKING([which libtool initialization strategy to adopt])
+-AC_MSG_RESULT([m4_ifset([LT_INIT],[LT-INIT],[AC-PROG-LIBTOOL])])
+-m4_ifset([LT_INIT],
+-[LT_INIT],
+-[AC_PROG_LIBTOOL])
++# AC_MSG_CHECKING([which libtool initialization strategy to adopt])
++# AC_MSG_RESULT([m4_ifset([LT_INIT],[LT-INIT],[AC-PROG-LIBTOOL])])
++# m4_ifset([LT_INIT],
++# [LT_INIT],
++# [AC_PROG_LIBTOOL])
+ 
+ GNOME_COMPILE_WARNINGS
+ GNOME_CXX_WARNINGS
+@@ -148,7 +148,7 @@
+ AM_WITH_GUILE(, [echo optional guile\?],,)
+ if test x$coot_guile = xtrue ; then
+    GUILE_FLAGS
+-   AM_GUILE_LIB
++   # AM_GUILE_LIB
+    # guile-gui depends on a gui interface being present.  If it is, force check for guile-gui
+    if test x$with_guile_gtk != x ; then
+       AM_GUILE_GUI

coot-guile.patch

@@ -0,0 +1,27 @@
+--- macros/guile_orig.m4	2013-07-31 00:25:19.715073145 -0700
++++ macros/guile.m4	2013-07-31 00:27:01.763927099 -0700
+@@ -72,21 +72,21 @@
+ # The variables are marked for substitution, as by @code{AC_SUBST}.
+ #
+ AC_DEFUN([GUILE_PROGS],
+- [AC_PATH_PROG(GUILE,guile)
++ [AC_PATH_PROG(GUILE,guile1.8)
+   if test x$with_guile = xyes ; then 
+      if test "$GUILE" = "" ; then
+ 	AC_MSG_ERROR([guile required but not found])
+      fi
+   fi
+   AC_SUBST(GUILE)
+-  AC_PATH_PROG(GUILE_CONFIG,guile-config)
++  AC_PATH_PROG(GUILE_CONFIG,guile1.8-config)
+   if test x$with_guile = xyes ; then 
+      if test "$GUILE_CONFIG" = "" ; then
+         AC_MSG_ERROR([guile-config required but not found])
+      fi
+   fi
+   AC_SUBST(GUILE_CONFIG)
+-  AC_PATH_PROG(GUILE_TOOLS,guile-tools)
++  AC_PATH_PROG(GUILE_TOOLS,guile1.8-tools)
+   AC_SUBST(GUILE_TOOLS)
+  ])
+ 

coot-lbg.patch

@@ -0,0 +1,11 @@
+--- lbg/lbg.cc_orig	2016-11-09 21:27:32.074363190 -0500
++++ lbg/lbg.cc	2016-11-09 21:27:47.836327788 -0500
+@@ -4873,7 +4873,7 @@
+       } 
+    } else {
+ 
+-      PyObject *pName = PyString_FromString("lidia.fetch");
++      PyObject *pName = PyString_FromString("coot.lidia.fetch");
+       PyObject *pModule = PyImport_Import(pName);
+       if (pModule == NULL) {
+ 	 std::cout << "NULL pModule" << std::endl;

coot-makefile.patch

@@ -0,0 +1,35 @@
+--- src/Makefile.am_orig	2016-11-09 16:13:53.942706012 -0500
++++ src/Makefile.am	2016-11-09 16:15:08.263956290 -0500
+@@ -457,7 +457,9 @@
+    EXTRA_DIST += coot_wrap_python_pre.cc 
+ endif
+ if COOT_USE_PYTHON
+-   dist_python_PYTHON = coot.py coot.pth
++   # dist_python_PYTHON = coot.py coot.pth
++   pythondir = $(pkgdatadir)/python
++   dist_pkgpython_SCRIPTS = coot.py
+ endif
+ 
+ 
+--- lbg/Makefile.am_orig	2016-11-09 16:46:09.161705178 -0500
++++ lbg/Makefile.am	2016-11-09 21:51:45.630944576 -0500
+@@ -73,8 +73,8 @@
+ # I don't understand.  Maybe the setting of wl should be done in configure?  But then
+ # I have to force the output of libtool.  Bleugh.  Hmm...
+ # Anyway, thankyou Gary Vaughan.
+-wl=-Wl,
+-lidia_LDFLAGS = $(EXPORT_DYNAMIC_FLAG_SPEC)
++# wl=-Wl,
++# lidia_LDFLAGS = $(EXPORT_DYNAMIC_FLAG_SPEC)
+ 
+ # res spec output operator means we include libcoot-coord-utils
+ # (if that is annoying, then remove it and expand it by hand)
+@@ -106,7 +106,7 @@
+ test_srs_standalone_SOURCES = test-srs-standalone.cc
+ test_srs_standalone_LDADD = $(CCP4SRS_LIBS) $(MMDB_LIBS)
+ 
+-pkgpythondir=$(pythondir)/lidia
++pkgpythondir=$(pythondir)/coot/lidia
+ 
+ dist_pkgpython_PYTHON = \
+     __init__.py fetch.py

coot-rdkit.patch

@@ -0,0 +1,11 @@
+--- lbg/lbg-search.cc_orig	2016-11-09 18:29:44.870809951 -0500
++++ lbg/lbg-search.cc	2016-11-09 18:42:43.549933656 -0500
+@@ -34,7 +34,7 @@
+ #include "geometry/srs-interface.hh"
+ #ifdef RDKIT_HAS_CAIRO_SUPPORT
+ #include <cairo.h>
+-#include <MolDraw2DCairo.h>
++#include <GraphMol/MolDraw2D/MolDraw2DCairo.h>
+ #include "lidia-core/rdkit-interface.hh"
+ #else
+ #include "lidia-core/rdkit-interface.hh"

coot-utils.patch

@@ -0,0 +1,20 @@
+--- coot-utils/coot-shelx.hh_orig	2016-04-07 22:05:10.753625059 -0400
++++ coot-utils/coot-shelx.hh	2016-04-07 22:05:43.366973568 -0400
+@@ -33,6 +33,7 @@
+ 
+ #include <mmdb2/mmdb_manager.h>
+ #include "clipper/core/cell.h"
++#include "coot-coord-utils.hh"
+ 
+ namespace coot {
+ 
+--- coot-utils/coot-hole.hh_orig	2016-04-07 22:05:55.561054355 -0400
++++ coot-utils/coot-hole.hh	2016-04-07 22:06:16.954432665 -0400
+@@ -4,6 +4,7 @@
+ #include "clipper/core/xmap.h"
+ #include "clipper/core/nxmap.h"
+ 
++#include "coot-map-utils.hh"
+ #include "utils/coot-utils.hh"
+ #include "geometry/protein-geometry.hh"
+ 

coot.desktop

@@ -0,0 +1,10 @@
+[Desktop Entry]
+Encoding=UTF-8
+Name=coot
+GenericName=coot
+Comment=macromolecular model builder
+Exec=coot
+Icon=coot
+Terminal=false
+Type=Application
+Categories=Graphics;Science;Chemistry;

coot.in

@@ -0,0 +1,62 @@
+#!/bin/sh
+# -*-shell-script-*-
+# coot wrapper script 
+# Copyright 2004, 2005, 2006, 2007 University of York
+# written by Paul Emsley
+
+COOT_PREFIX="@prefix@"
+current_exe_dir="@libexecdir@"
+
+coot_real=$current_exe_dir/coot-bin
+# echo coot-real is at $coot_real
+
+# ----------------------------------------------------------------------------
+# ----------------------------------------------------------------------------
+# If the COOT_PREFIX is correct, then these should not need modification
+# i.e.  nothing below here need be changed.
+# ----------------------------------------------------------------------------
+# ----------------------------------------------------------------------------
+# 
+prefix=$COOT_PREFIX
+
+SYMINFO=$COOT_PREFIX/share/coot/syminfo.lib
+COOT_SCHEME_DIR=$COOT_PREFIX/share/coot/scheme
+COOT_STANDARD_RESIDUES=$COOT_PREFIX/share/coot/standard-residues.pdb
+COOT_PIXMAPS_DIR=$COOT_PREFIX/share/coot/pixmaps
+COOT_DATA_DIR=$COOT_PREFIX/share/coot
+COOT_RESOURCES_FILE=$COOT_PREFIX/share/coot/cootrc
+COOT_REF_STRUCTS=$COOT_PREFIX/share/coot/reference-structures
+COOT_PYTHON_DIR=
+COOT_REFMAC_LIB_DIR=
+
+PYTHONPATH=${PYTHONPATH:+"${PYTHONPATH}:"}$COOT_PYTHON_DIR
+
+GUILE_WARN_DEPRECATED=no
+
+if [ -n "$LOCAL_GUILE_LOAD_PATH_EXTRAS" ] ; then 
+    GUILE_LOAD_PATH=${LOCAL_GUILE_LOAD_PATH_EXTRAS}:$GUILE_LOAD_PATH
+    export GUILE_LOAD_PATH
+fi
+
+# echo GUILE_LOAD_PATH is now $GUILE_LOAD_PATH
+
+export SYMINFO
+export COOT_PREFIX
+export COOT_STANDARD_RESIDUES
+export COOT_REFMAC_LIB_DIR
+export COOT_PYTHON_DIR
+export PYTHONPATH
+export COOT_SCHEME_DIR
+export COOT_REF_STRUCTS
+export COOT_RESOURCES_FILE
+export COOT_PIXMAPS_DIR
+export COOT_DATA_DIR
+
+echo $coot_real $*
+$coot_real $*
+status=$?
+
+if [ $status != 0 ] ; then
+    @bindir@/guile -s $COOT_PREFIX/share/coot/scheme/coot-crash-catcher.scm $coot_real
+fi 
+

coot.spec

@@ -0,0 +1,463 @@
+%global refmac_dictionary %(rpm -q --queryformat '%%{name}-%%{version}' refmac-dictionary)
+Name: coot
+Summary: The crystallographic object-oriented toolkit
+URL: http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
+Version: 0.8.8
+Release: 5%{?dist}
+# source code is mixed GPLv3+ and LGPLv2+ (see files for breakdown)
+License: GPLv3+
+Group: Applications/Engineering
+Source0: http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/%{name}-%{version}.tar.gz
+# additional files for reference/libraries used in main binary
+Source1: http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/reference-structures.tar.gz
+Source2: coot.in
+Source3: %{name}.desktop
+Source4: __init__.py
+# don't use broken guile_lib autoconf macro
+Patch0: coot-configure.ac.patch
+# fix location of python files and remove hard coding of -Wl
+Patch1: coot-makefile.patch
+# fix to use guile1.8 config in autoconf script
+Patch2: coot-guile.patch
+# fix to includes so build completes
+Patch3: coot-utils.patch
+# proper include for rdkit
+Patch4: coot-rdkit.patch
+# Fix for moving python files to coot/lidia
+Patch5: coot-lbg.patch
+BuildRequires: autoconf
+BuildRequires: automake
+BuildRequires: clipper-devel >= 2.1-7
+BuildRequires: desktop-file-utils
+BuildRequires: doxygen
+BuildRequires: libappstream-glib
+BuildRequires: freeglut-devel
+BuildRequires: goocanvas-devel
+BuildRequires: gsl-devel
+BuildRequires: gtk2-devel
+BuildRequires: gtkglext-devel
+BuildRequires: compat-guile18-devel
+BuildRequires: guile-lib
+BuildRequires: imlib-devel
+BuildRequires: libcurl-devel
+BuildRequires: libgnomecanvas-devel
+BuildRequires: libtool
+BuildRequires: mmdb2-devel
+BuildRequires: python2-devel
+BuildRequires: python2-rdkit
+BuildRequires: pygtk2-devel
+BuildRequires: rdkit-devel
+BuildRequires: refmac-dictionary
+BuildRequires: ssm-devel
+BuildRequires: swig
+BuildRequires: tex(latex)
+BuildRequires: texinfo-tex
+BuildRequires: ghostscript
+Requires: compat-guile18
+Requires: hicolor-icon-theme
+Requires: refmac-dictionary
+Requires: %{name}-data = %{version}-%{release}
+Requires: lib%{name}%{?_isa} = %{version}-%{release}
+Requires: python2-%{name}%{?_isa} = %{version}-%{release}
+
+%description
+
+Coot is a toolkit for Macromolecular Crystallography and
+model-building.  Coot uses professional (and free) widgets (with the
+GUI builder glade), mmdb, clipper, and OpenGL, together with a new
+approach to map contouring and importing/creation and other modeling
+and building operations.
+
+%package data
+Summary: Data files for coot
+Group: Applications/Engineering
+BuildArch: noarch
+
+%description data
+
+The coot-data package contains all the support files for coot, such
+as reference structures, rotamer libraries, etc.
+
+%package -n libcoot
+Summary: Library files for coot
+Group: Development/Libraries
+
+%description -n libcoot
+
+This package contains library files needed for program development
+using the coot macromolecular model building package.
+
+%package -n libcoot-devel
+Summary: Header files and library for developing programs with coot
+Group: Development/Libraries
+Requires: lib%{name}%{?_isa} = %{version}-%{release}
+
+%description -n libcoot-devel
+
+This package contains header files needed for program development
+using the coot macromolecular model building package.
+
+%package -n python2-%{name}
+%{?python_provide:%python_provide python2-%{name}}
+Summary: Python support for coot
+Group: Development/Libraries
+
+%description -n python2-%{name}
+
+This package contains python specific library files needed for
+coot to provide support for and interface with the python shell
+
+%package doc
+Summary: documentation PDF files for coot
+Group: Applications/Engineering
+BuildArch: noarch
+
+%description doc
+
+the coot-doc package contains information concerning the use and
+button/key shortcuts for the coot macromolecular model building
+package.
+
+%prep
+%setup -q -a 1
+%patch0 -p0
+%patch1 -p0
+%patch2 -p0
+%patch3 -p0
+%patch4 -p0
+%patch5 -p0
+
+cp %{SOURCE2} ./src/
+cp %{SOURCE3} .
+
+# various cleanups
+iconv -f iso8859-1 -t utf-8 README > README.conv && mv -f README.conv README
+
+rm macros/libtool.m4
+aclocal -I macros
+libtoolize --automake --copy
+autoconf
+automake --copy --add-missing --gnu
+
+%build
+mkdir guile
+%configure --with-guile --with-python --with-pygtk --disable-static CXXFLAGS="$RPM_OPT_FLAGS -fno-strict-aliasing" --with-enhanced-ligand-tools RDKIT_LIBS="-lMolDraw2D -lForceFieldHelpers -lDescriptors -lForceField -lSubstructMatch -lOptimizer -lDistGeomHelpers -lDistGeometry -lAlignment -lEigenSolvers -lDepictor -lMolChemicalFeatures -lFileParsers  -lRDGeometryLib -lGraphMol -lSmilesParse -lDataStructs -lRDGeneral -lboost_python -lpython2.7" RDKIT_CXXFLAGS="-I%{_includedir}/rdkit -DRDKIT_HAS_CAIRO_SUPPORT"
+
+# remove rpath, direct-shlib-dep
+sed -i 's|^hardcode_libdir_flag_spec=.*|hardcode_libdir_flag_spec=""|g' libtool
+sed -i 's|^runpath_var=LD_RUN_PATH|runpath_var=DIE_RPATH_DIE|g' libtool
+sed -i -e 's! -shared ! -Wl,--as-needed\0!g' libtool
+# sed -i "s|ofile='libtool'|ofile='libtool.foo'|" config.status
+sed -i 's|$(SHELL) ./config.status;; \\|echo "skipping";; \\|' Makefile
+cp libtool libtool.tdf
+
+make %{?_smp_mflags}
+pushd src
+doxygen coot-dox.cfg
+popd
+pushd doc
+make coot-user-manual.pdf
+make coot-keys-and-buttons.pdf
+popd
+
+%install
+make install DESTDIR=%{buildroot} INSTALL='install -p'
+
+mv reference-structures %{buildroot}%{_datadir}/coot/
+
+sed -i 's|COOT_PYTHON_DIR=|COOT_PYTHON_DIR=%{python2_sitelib}/coot|' src/coot
+sed -i 's|COOT_REFMAC_LIB_DIR=|COOT_REFMAC_LIB_DIR=%{_datadir}/%{refmac_dictionary}|' src/coot
+install -p -m 755 src/coot %{buildroot}%{_bindir}/
+
+# remove unpackaged files from the buildroot
+rm -f %{buildroot}%{_libdir}/*.la
+rm -f %{buildroot}%{python2_sitearch}/*.la
+
+# python stuff
+for lib in $(find %{buildroot}%{python2_sitelib}/coot/ -name "*.py"); do
+ sed '/\/usr\/bin\/env/d' $lib > $lib.new &&
+ touch -r $lib $lib.new &&
+ mv $lib.new $lib
+done
+cp %{SOURCE4} %{buildroot}%{python2_sitelib}/coot/
+chmod 644 %{buildroot}%{python2_sitelib}/coot/coot.py
+
+# desktop file
+desktop-file-install --vendor='' --dir=%{buildroot}%{_datadir}/applications coot.desktop
+appstream-util validate-relax --nonet %{buildroot}/%{_datadir}/appdata/*.appdata.xml
+
+%post
+/bin/touch --no-create %{_datadir}/icons/hicolor &>/dev/null || :
+
+%post -n libcoot -p /sbin/ldconfig
+
+%postun
+if [ $1 -eq 0 ] ; then
+    /bin/touch --no-create %{_datadir}/icons/hicolor &>/dev/null
+    /usr/bin/gtk-update-icon-cache %{_datadir}/icons/hicolor &>/dev/null || :
+fi
+
+%postun -n libcoot -p /sbin/ldconfig
+
+%posttrans
+/usr/bin/gtk-update-icon-cache %{_datadir}/icons/hicolor &>/dev/null || :
+
+%files
+%{_bindir}/*
+%{_libexecdir}/*
+%{_datadir}/applications/%{name}.desktop
+%{_datadir}/appdata/%{name}.appdata.xml
+%{_datadir}/icons/hicolor/48x48/apps/coot.png
+%{_datadir}/icons/hicolor/64x64/apps/coot.png
+%{_datadir}/icons/hicolor/96x96/apps/coot.png
+%{_datadir}/icons/hicolor/256x256/apps/coot.png
+%{_datadir}/icons/hicolor/scalable/apps/coot.svg
+%{_mandir}/man1/*
+
+%files data
+%{_datadir}/coot/
+
+%files -n libcoot
+%doc AUTHORS README
+%license COPYING
+# GPLv3+ 
+%{_libdir}/*.so.*
+
+%files -n python2-%{name}
+%{python2_sitelib}/coot/
+%{python2_sitearch}/*.so.*
+%{python2_sitearch}/*.so
+
+%files -n libcoot-devel
+%{_libdir}/*.so
+%{_includedir}/coot/
+
+%files doc
+%license COPYING
+%doc doc/coot-keys-and-buttons.pdf doc/coot-user-manual.pdf
+
+%changelog
+* Wed Aug 02 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.8.8-5
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
+
+* Wed Jul 26 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.8.8-4
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
+
+* Mon Jul 24 2017 Björn Esser <besser82@fedoraproject.org> - 0.8.8-3
+- Rebuilt for Boost 1.64
+
+* Mon May 15 2017 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.8.8-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild
+
+* Sat Mar 18 2017 Tim Fenn <tim.fenn@gmail.com> - 0.8.8-1
+- update to 0.8.8
+
+* Thu Feb 09 2017 Tim Fenn <tim.fenn@gmail.com> - 0.8.7-6
+- Fix to requires
+
+* Wed Feb 08 2017 Kalev Lember <klember@redhat.com> - 0.8.7-5
+- Rebuilt for Boost 1.63
+
+* Sun Feb 05 2017 Tim Fenn <tim.fenn@gmail.com> - 0.8.7-4
+- add missing patch
+
+* Thu Jan 26 2017 Tim Fenn <tim.fenn@gmail.com> - 0.8.7-3
+- rename python2 package
+- add python_provide macro
+- remove hardcoded library path include
+
+* Sat Nov 12 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.7-2
+- test build for fixing unused-shlib and weak-sybmol
+
+* Sun Nov 06 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.7-1
+- update to 0.8.7
+- fix requires in devel packages
+- make coot-data noarch
+- remove macros and lingering ldconfig calls
+
+* Tue Nov 01 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.6.2-2
+- move license and doc files to libcoot
+- remove spurious ldconfig
+- split out python files and data to separate packages and add requires
+
+* Sat Oct 22 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.6.2-1
+- update to 0.8.6.2
+- add rdkit support (and patch to fix it)
+- change define to global
+- fix hicolor requires and png files
+- fix shlib dep
+- remove outdated autoconf macro
+
+* Fri Oct 14 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.6.1-3
+- remove unecessary rhel only macros
+- put doc in noarch
+
+* Fri Oct 07 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.6.1-2
+- include description of patches
+- python-devel to python2-devel BR
+- remove python-sitelib macro (use system defined version)
+
+* Fri Aug 26 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.6.1-1
+- update to 0.8.6.1
+
+* Sat Jul 30 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.5-1
+- update to 0.8.5
+
+* Thu Apr 07 2016 Tim Fenn <tim.fenn@gmail.com> - 0.8.3-1
+- Update to 0.8.3
+
+* Mon Feb 22 2016 Orion Poplawski <orion@cora.nwra.com> - 0.8.2-3
+- Rebuild for gsl 2.1
+
+* Wed Feb 03 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.8.2-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
+
+* Mon Sep 7 2015 Tim Fenn <tim.fenn@gmail.com> - 0.8.2-1
+- update to 0.8.2
+- add patch for coot-utils
+
+* Sun Jun 28 2015 Tim Fenn <tim.fenn@gmail.com> - 0.8.1-3
+- fix to appdata.xml
+- add all icon pixmaps, edit desktop file to match
+
+* Wed Jun 17 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.8.1-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
+
+* Sat Jan 31 2015 Tim Fenn <tim.fenn@gmail.com> - 0.8.1-1
+- update to 0.8.1
+- update URL
+- no sxml support in guile 1.8 (remove AM_GUILE_LIB check)
+- add gtk update icon cache scriptlets
+- add appdata xml file and additional app-data-validate scripts
+
+* Sat Aug 16 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.2-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
+
+* Sat Jun 07 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7.2-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
+
+* Fri Dec 27 2013 Tim Fenn <tim.fenn@gmail.com> - 0.7.2-1
+- update to 0.7.2
+- update upstream URLs, no longer using vcs
+
+* Sun Aug 11 2013 Tim Fenn <tim.fenn@gmail.com> - 0.7-5.20120929svn4458
+- add ghostscript to buildrequires
+
+* Fri Aug 09 2013 Tim Fenn <tim.fenn@gmail.com> - 0.7-4.20120929svn4458
+- use xz instead of gz (BZ 982385)
+- update for soname bump in deps (BZ 989141)
+- use guile1.8-compat, add guile requires
+
+* Sat Aug 03 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7-3.20120929svn4458
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
+
+* Wed Feb 13 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.7-2.20120929svn4458
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
+
+* Sat Sep 29 2012 Tim Fenn <tim.fenn@gmail.com> - 0.7-1.20120929svn4458
+- update to 0.7
+
+* Wed Jul 18 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.2-14.20110715svn3566
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild
+
+* Tue Feb 28 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.2-13.20110715svn3566
+- Rebuilt for c++ ABI breakage
+
+* Sat Jan 14 2012 Tim Fenn <tim.fenn@gmail.com> - 0.6.2-12.20110715svn3566
+- patches to fix unistd.h issue and compilation errors
+
+* Thu Jan 12 2012 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.2-11.20110715svn3566
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild
+
+* Sat Dec 10 2011 Tim Fenn <tim.fenn@gmail.com> - 0.6.2-10.20110715svn3566
+- patch for new libpng
+
+* Tue Dec 06 2011 Adam Jackson <ajax@redhat.com> - 0.6.2-9.20110715svn3566
+- Rebuild for new libpng
+
+* Fri Jul 15 2011 Tim Fenn <fenn@stanford.edu> - 0.6.2-8.20110715svn3566
+- update to SVN 3566 (0.6.2 final)
+
+* Tue Apr 26 2011 Tim Fenn <fenn@stanford.edu> - 0.6.2-7.20110421svn3461
+- add reference structures source file
+
+* Tue Apr 26 2011 Tim Fenn <fenn@stanford.edu> - 0.6.2-6.20110421svn3461
+- add missing source
+
+* Thu Apr 21 2011 Tim Fenn <fenn@stanford.edu> - 0.6.2-5.20110421svn3461
+- update to SVN 3461
+- fix missing Requires: guile-lib
+
+* Tue Mar 29 2011 Tim Fenn <fenn@stanford.edu> - 0.6.2-4.20110328svn3442
+- update to SVN 3442 (should remove guile-gtk broken dependencies)
+
+* Fri Feb 25 2011 Tim Fenn <fenn@stanford.edu> - 0.6.2-3.20110225svn3399
+- update to SVN 3399
+
+* Tue Feb 08 2011 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.6.2-2.20101012svn3213
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild
+
+* Tue Oct 12 2010 Tim Fenn <fenn@stanford.edu> - 0.6.2-1.20101012svn3213
+- update to 0.6.2
+
+* Thu Aug 05 2010 Tim Fenn <fenn@stanford.edu> - 0.6.1-3.20100127svn2740
+- fix file attr
+- add comment to make check error
+
+* Tue Jul 20 2010 Tim Fenn <fenn@stanford.edu> - 0.6.1-2.20100127svn2740
+- move some documentation to subpackage
+- add check section
+
+* Wed Jan 27 2010 Tim Fenn <fenn@stanford.edu> - 0.6.1-1.20100127svn2740
+- update to SVN 2740, 0.6.1 release
+- add curl buildrequires
+
+* Thu Dec 03 2009 Tim Fenn <fenn@stanford.edu> - 0.6-6.20091203svn2545
+- update to SVN 2545, 0.6 release
+
+* Mon Nov 30 2009 Tim Fenn <fenn@stanford.edu> - 0.6-5.20091130svn2528
+- fix texi, include user-manual
+- update to SVN 2528
+- remove net-http, guile-goosh and guile-gui
+
+* Wed Oct 07 2009 Tim Fenn <fenn@stanford.edu> - 0.6-4.20091007svn2404
+- update buildrequires
+- use tetex-latex on EL builds
+- update to SVN 2404 (fixes some licensing issues)
+
+* Mon Oct 05 2009 Tim Fenn <fenn@stanford.edu> - 0.6-3.20091005svn2400
+- update to SVN 2400
+
+* Wed Sep 23 2009 Tim Fenn <fenn@stanford.edu> - 0.6-2.20090920svn2334
+- edit summary
+- update upstream URL
+- make create_server.py non-executable
+- chmod src to 644
+
+* Sun Sep 20 2009 Tim Fenn <fenn@stanford.edu> - 0.6-1.20090920svn2334
+- update to 0.6
+- get source from VCS system
+
+* Wed Mar 25 2009 Tim Fenn <fenn@stanford.edu> - 0.5.2-3
+- fix summary
+- add additional licensing information
+- split guile-extras into original tarballs
+
+* Sat Mar 14 2009 Tim Fenn <fenn@stanford.edu> - 0.5.2-2
+- fix for desktop-file-install
+- gcc 4.4 patch
+
+* Mon Dec 15 2008 Tim Fenn <fenn@stanford.edu> - 0.5.2-1
+- update to 0.5.2
+
+* Thu Nov 27 2008 Tim Fenn <fenn@stanford.edu> - 0.5-3
+- use consistent buildroot
+- include gtkglext-devel, guile-lib, desktop-file-utils in buildrequires
+- remove pyobject2 in buildrequires
+
+* Tue Nov 18 2008 Tim Fenn <fenn@stanford.edu> - 0.5-2
+- enable guile
+- include extra guile modules
+
+* Mon Nov 17 2008 Tim Fenn <fenn@stanford.edu> - 0.5-1
+- initial build

dead.package

@@ -0,0 +1,3 @@
+2016-05-31: Retired because of broken deps in preparation of Fedora 24
+Reference: https://fedorahosted.org/rel-eng/ticket/6416
+

sources

@@ -0,0 +1,2 @@
+SHA512 (coot-0.8.8.tar.gz) = 6d99e4bc0a5cd17b46bd52741b934e98e98eec9fe5a9fd108e891834256e17cc03eb12327aa6756beff4ce552456ae5e8a0ee459ecf3894a99809be218481b83
+SHA512 (reference-structures.tar.gz) = 7ebe28a619a577b18fc66e714f0bc8347121ebb12f372ac29c1d2d96013e608632921ea26caea3b62744252ae356949de8e04a6513f1a1e0ba30865708c26ffe