From d1a96adae468bc4a22fb3b720ba00a248fcf7dc0 Mon Sep 17 00:00:00 2001
From: "Benjamin A. Beasley" <code@musicinmybrain.net>
Date: Fri, 6 Dec 2024 10:11:30 -0500
Subject: [PATCH] Omit lenna.png from the source archive

- https://pagure.io/neuro-sig/NeuroFedora/issue/576
- https://github.com/G-Node/nixpy/issues/545
---
 .gitignore        |  1 +
 get_source        | 50 +++++++++++++++++++++++++++++++++++++++++++++++
 python-nixio.spec | 24 +++++++++++++++++++----
 sources           |  2 +-
 4 files changed, 72 insertions(+), 5 deletions(-)
 create mode 100755 get_source

diff --git a/.gitignore b/.gitignore
index 8bd9645..3e6aab7 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,3 +5,4 @@
 /nixpy-1.5.1.tar.gz
 /nixpy-1.5.2.tar.gz
 /nixpy-1.5.3.tar.gz
+/nixpy-1.5.3-filtered.tar.gz
diff --git a/get_source b/get_source
new file mode 100755
index 0000000..1ac2cc4
--- /dev/null
+++ b/get_source
@@ -0,0 +1,50 @@
+#!/bin/sh
+set -o errexit
+set -o nounset
+
+if [ "$#" != '1' ]
+then
+	cat 1>&2 <<EOF
+Usage: $0 VERSION
+
+Downloads the requested version and creates a filtered source tarball.
+EOF
+	exit 1
+fi
+
+VERSION="${1}"
+OUTDIR="${PWD}"
+TMPDIR="$(mktemp -d)"
+trap "rm -rf '${TMPDIR}'" INT TERM EXIT
+
+cd "${TMPDIR}"
+REPO="https://github.com/G-node/nixpy"
+URL="${REPO}/archive/${VERSION}/nixpy-${VERSION}.tar.gz"
+echo "--> Downloading: ${URL}" 1>&2
+curl -L -O "${URL}"
+
+ARCHIVE="$(find . -mindepth 1 -maxdepth 1 -type f -name '*.tar.gz' -print -quit)"
+echo "--> Extracting: $(basename "${ARCHIVE}")" 1>&2
+tar -xzf "${ARCHIVE}"
+echo '--> Removing Lenna/Lena image due to licensing and other issues' 1>&2
+TARDIR="$(basename "${ARCHIVE}" '.tar.gz')"
+MTIME="$(stat -c '%Y' "${TARDIR}")"
+# https://github.com/G-Node/nixpy/issues/545
+find "${TARDIR}" -type f -name lenna.png -print -delete
+# Make sure the original mtime is preserved even if we modified the base
+# directory by removing something at the top level. (So far, we didn’t.)
+touch -d @"${MTIME}" "${TARDIR}"
+FILTERED="$(basename "${ARCHIVE}" .tar.gz)-filtered.tar.gz"
+echo "--> Re-archiving: ${FILTERED}" 1>&2
+# https://www.gnu.org/software/tar/manual/html_section/Reproducibility.html
+TZ=UTC LC_ALL=C tar \
+    --create \
+    --sort=name \
+    --format=posix \
+    --numeric-owner --owner=0 --group=0 \
+    --mode=go+u,go-w \
+    --pax-option='delete=atime,delete=ctime' \
+    "${TARDIR}/" |
+  gzip -9 > "${FILTERED}"
+mv -v "${FILTERED}" "${OUTDIR}"
+echo 'Done.' 1>&2
diff --git a/python-nixio.spec b/python-nixio.spec
index 4badb94..9e0f86f 100644
--- a/python-nixio.spec
+++ b/python-nixio.spec
@@ -11,12 +11,22 @@ Summary:    Python bindings for NIX
 # Automatically converted from old format: BSD - review is highly recommended.
 License:    LicenseRef-Callaway-BSD
 URL:        %forgeurl
-Source0:    %forgesource
+# We need to upload a filtered version of the source archive because
+# docs/source/examples/lenna.png has several issues, including the lack of a
+# license. We have asked upstream to deal with this in
+#   Please consider replacing lenna.png
+#   https://github.com/G-Node/nixpy/issues/545
+# but for now, we must obtain the filtered archive by running the script in
+# Source2:
+#   ./get_source ${VERSION}
+%dnl Source0:    %forgesource
+Source0:    nixpy-%{version}-filtered.tar.gz
 # The tagged snapshot on GitHub still says "dev" but the manually uploaded
 # release does not, so use the info.json from there
 # https://github.com/G-Node/nixpy/issues/528
 Source1:    info.json
-
+# * Script used to obtain Source0: ./get_source %%{version}
+Source2:    get_source
 
 BuildArch:      noarch
 # No need for nix, they're uncoupling it from the C++
@@ -48,7 +58,7 @@ BuildRequires:  %{py3_dist matplotlib}
 %{description}
 
 %prep
-%forgesetup
+%autosetup -n nixpy-%{version}
 
 # it sets examples_path based on the name of the cwd
 sed -i "s/nixpy/nixpy-%{version}/" nixio/test/test_doc_examples.py
@@ -66,7 +76,13 @@ cp %{SOURCE1} nixio/info.json -v -p
 %pyproject_save_files nixio
 
 %check
-%{pytest}
+# These require the removed lenna.png sample file:
+k="${k-}${k+ and }not (TestDocumentationExamples and test_image_data)"
+k="${k-}${k+ and }not (TestDocumentationExamples and test_image_with_metadata)"
+k="${k-}${k+ and }not (TestDocumentationExamples and test_multiple_rois)"
+k="${k-}${k+ and }not (TestDocumentationExamples and test_single_roi)"
+
+%pytest -k "${k-}"
 
 %files -n python3-nixio -f %{pyproject_files}
 %{_bindir}/nixio
diff --git a/sources b/sources
index ef0608e..c783ccb 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (nixpy-1.5.3.tar.gz) = 1b3fd6bb638797a90a2e899d9ae3663a6a0ee3dfc5fe8c6c0806ed5ac2a34ef54771cdb1a715bf400020c6f5df7f3f348ee7129ed1e055381fa11aa5a8b6b218
+SHA512 (nixpy-1.5.3-filtered.tar.gz) = 00472f0666b4313124b90b8f14219d1f2a5e56e7174b4eaa2174a7d88a3251513f5fc279d49c1b19dbca3c1c5470ae90049347370e94077aeda24c4db1e5e786