diff --git a/.gitignore b/.gitignore deleted file mode 100644 index ed8469f..0000000 --- a/.gitignore +++ /dev/null @@ -1 +0,0 @@ -/pygiftiio-1.0.4.tar.gz diff --git a/gifti_read_example.py b/gifti_read_example.py deleted file mode 100644 index e167e08..0000000 --- a/gifti_read_example.py +++ /dev/null @@ -1,66 +0,0 @@ -from pygiftiio import * -import numpy - -# Read Gifti Image -filename = '/path/to/file' -image = gifti_read_image(fn, 1) - -# image is now of type GiftiImage -# The _fields_ variable is populated with the same structure -# as the C-based struct -# Now we query the image to get data arrays, meta data, etc. -print "Number of Data Arrays in Image = " + str(image.numDA) - -# Extract a dataarray from the Gifti Image based on its index. -def get_da_from_index(im, ind): - if ind = im.numDA: - print "Index exceeds number of DA's in gifti image" - - # Most things are handled automatically by the ctypes wrapping. - # However, in the case of pointers, you need to access the - # contents of the pointer to get the right result - return im.darray[ind].contents - -# Extract a dataarray from the Gifti Image based on its IntentCode -def get_da_from_intent(im, intent): - for i in xrange(im.numDA): - # Intent code is stored in the DataArray struct - da = im.darray[i].contents - - # The wrapping allows the intent codes to be represented as - # integers as defined by the C-Macros or as the strings that - # are replaced. - if type(intent) == type(1): - if da.intent == intent: - # Grab the first DataArray that is the correct intent - return da - else: - # If it's not an int, we have to look up the integer value in - # the Intent Code dictionary - if da.intent == GiftiIntentCode.intents[intent]: - return da - -# Extract metadata from the GiftiImage OR a GiftiDataArray -def get_metadata_from_image(im): - metadata = im.meta - # metadata is now of type GiftiMetaData. It has length, name, and value arrays. - return metadata - -# Print all the metadata in the GiftiMetaData object -def print_metadata(md): - size = md.length - for i in xrange(size): - name = md.name[i] - val = md.value[i] - print str(name) + ": " + str(val) - -# Extract the Coordinate Transform(s) from a dataarray -def get_coord_xform(da): - dspace = da.coordsys.contents.dataspace - xformspace = da.coordsys.contents.xformspace - xform = da.coordsys.contents.xform - xform_ar = numpy.array(xform) # make the list of values into an array - xform_ar.shape = 4,4 # reshape the array into a valid transform matrix - return xform_ar # Return a numpy array representing the transform - - diff --git a/gifti_write_example.py b/gifti_write_example.py deleted file mode 100644 index 9605374..0000000 --- a/gifti_write_example.py +++ /dev/null @@ -1,75 +0,0 @@ -from pygiftiio import * -from ctypes import * -import numpy - -# setup -image = GiftiImage() -# CTypes provides constructors for pointer-based types. This is important -# to the initialization of the various members of the structs we need -# to write via the library. -image.version = c_char_p("version_string") -image.darray = POINTER(POINTER(GiftiDataArray))() -image.data = c_void_p(None) -image.numDA = c_int(0) -image.swapped = c_int(0) -image.compressed = c_int(0) - -# type(im) = GiftiImage -# type(ver) = str -def set_version(im, ver): - image.version = c_char_p(ver) - -# type(im) = GiftiImage -# type(numDA) = int -def set_numDA(im, numDA): - im.numDA = c_int(numDA) - -# type(im) = GiftiImage -# type(md) = GiftiMetaData -def set_meta_data(im, md): - im.meta = md - -# type(im) = GiftiImage -# type(da) = GiftiDataArray -def add_data_array(im, da): - cur_numda = im.numDA - - # Create a pointer to the new dataarray - da_ptr = pointer(da.data) - # Grab the pointer to the image's dataarrays - ptr = image.darray - - # Create a new dataarray array pointer - ar = (POINTER(GiftiDataArray)*(cur_numda+1))() - # We need to cast the resulting pointer for use by C - ar = cast(ar, POINTER(POINTER(GiftiDataArray))) - - # Copy all of the current da's to the new array. This just copies the pointers! - for i in xrange(num_da): - ar[i] = im.darray[i] - - # Add the new data array to the image's data - ar[num_da] = da_ptr - - # Reassign the pointer - im.darray = ar - - # Tell the image it has an extra DA now - cur_numda += 1 - im.numDA = c_int(cur_numda) - -# type(da) = GiftiDataArray -# type(axis) = int -# type(val) = int -def set_da_dim(da, axis, val): - # Simple setter. However, the axis variable here is a - # python array index (as the da dims is an array) - # To properly assign the value, the val variable must - # be usable by C, so we must form a c_int type. - # This is true for all Setters. - da.dims[axis] = c_int(val) - -# type(filename) = string -# type(im) = GiftiImage -def write_image(filename, im): - return gifti_write_image, im, filename, 1) diff --git a/python-pygiftiio.spec b/python-pygiftiio.spec deleted file mode 100644 index be8a7ce..0000000 --- a/python-pygiftiio.spec +++ /dev/null @@ -1,174 +0,0 @@ -# https://fedoraproject.org/wiki/Packaging:DistTag?rd=Packaging/DistTag#Conditionals -# http://rpm.org/user_doc/conditional_builds.html -%if 0%{?fedora} >= 30 -# disabled by default -%bcond_with py2 -%else -%bcond_without py2 0 -%endif - -%global srcname pygiftiio - -%global desc %{expand: \ -GIFTI is an XML-based file format for cortical surface data. This reference IO -implementation is developed by the Neuroimaging Informatics Technology -Initiative (NIfTI).} - -Name: python-%{srcname} -Version: 1.0.4 -Release: 28%{?dist} -Summary: Python bindings for Gifti - -# Automatically converted from old format: GPLv2 - review is highly recommended. -License: GPL-2.0-only -URL: https://www.nitrc.org/frs/?group_id=75 -Source0: https://www.nitrc.org/frs/download.php/1285/%{srcname}-%{version}.tar.gz -Source1: https://www.nitrc.org/frs/download.php/261/gifti_write_example.py -Source2: https://www.nitrc.org/frs/download.php/260/gifti_read_example.py - -BuildArch: noarch - -%description -%{desc} - -%if %{with py2} -%package -n python2-%{srcname} -Summary: %{summary} -BuildRequires: python2-devel -Requires: gifticlib-devel -%{?python_provide:%python_provide python2-%{srcname}} - -%description -n python2-%{srcname} -%{desc} -%endif - -%package -n python3-%{srcname} -Summary: %{summary} -BuildRequires: python3-devel -Requires: gifticlib-devel -%{?python_provide:%python_provide python3-%{srcname}} - -%description -n python3-%{srcname} -%{desc} - - -%prep -%autosetup -n %{srcname} -cp -v %{SOURCE1} . -cp -v %{SOURCE2} . - -%build -# Nothing to do - -%install -# Put things where they belong -install -D -m 0644 %{srcname}.py -t %{buildroot}/%{python3_sitelib}/ -%if %{with py2} -install -D -m 0644 %{srcname}.py -t %{buildroot}/%{python2_sitelib}/ -%endif - -%check -# No tests - -%if %{with py2} -%files -n python2-%{srcname} -%license LICENSE.GPL -%doc gifti_write_example.py gifti_read_example.py -%{python2_sitelib}/%{srcname}.py -%{python2_sitelib}/%{srcname}.pyc -%{python2_sitelib}/%{srcname}.pyo -%endif - -%files -n python3-%{srcname} -%license LICENSE.GPL -%doc gifti_write_example.py gifti_read_example.py -%{python3_sitelib}/%{srcname}.py -%{python3_sitelib}/__pycache__/%{srcname}.cpython-3*.opt-1.pyc -%{python3_sitelib}/__pycache__/%{srcname}.cpython-3*.pyc - -%changelog -* Fri Sep 19 2025 Python Maint - 1.0.4-28 -- Rebuilt for Python 3.14.0rc3 bytecode - -* Fri Aug 15 2025 Python Maint - 1.0.4-27 -- Rebuilt for Python 3.14.0rc2 bytecode - -* Fri Jul 25 2025 Fedora Release Engineering - 1.0.4-26 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild - -* Mon Jun 02 2025 Python Maint - 1.0.4-25 -- Rebuilt for Python 3.14 - -* Sat Jan 18 2025 Fedora Release Engineering - 1.0.4-24 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild - -* Mon Jul 29 2024 Miroslav Suchý - 1.0.4-23 -- convert license to SPDX - -* Fri Jul 19 2024 Fedora Release Engineering - 1.0.4-22 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild - -* Fri Jun 07 2024 Python Maint - 1.0.4-21 -- Rebuilt for Python 3.13 - -* Fri Jan 26 2024 Fedora Release Engineering - 1.0.4-20 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild - -* Mon Jan 22 2024 Fedora Release Engineering - 1.0.4-19 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild - -* Fri Jul 21 2023 Fedora Release Engineering - 1.0.4-18 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild - -* Tue Jun 13 2023 Python Maint - 1.0.4-17 -- Rebuilt for Python 3.12 - -* Fri Jan 20 2023 Fedora Release Engineering - 1.0.4-16 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild - -* Fri Jul 22 2022 Fedora Release Engineering - 1.0.4-15 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild - -* Mon Jun 13 2022 Python Maint - 1.0.4-14 -- Rebuilt for Python 3.11 - -* Fri Jan 21 2022 Fedora Release Engineering - 1.0.4-13 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild - -* Fri Jul 23 2021 Fedora Release Engineering - 1.0.4-12 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild - -* Fri Jun 04 2021 Python Maint - 1.0.4-11 -- Rebuilt for Python 3.10 - -* Wed Jan 27 2021 Fedora Release Engineering - 1.0.4-10 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild - -* Wed Jul 29 2020 Fedora Release Engineering - 1.0.4-9 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild - -* Tue May 26 2020 Miro Hrončok - 1.0.4-8 -- Rebuilt for Python 3.9 - -* Thu Jan 30 2020 Fedora Release Engineering - 1.0.4-7 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild - -* Thu Oct 03 2019 Miro Hrončok - 1.0.4-6 -- Rebuilt for Python 3.8.0rc1 (#1748018) - -* Mon Aug 19 2019 Miro Hrončok - 1.0.4-5 -- Rebuilt for Python 3.8 - -* Fri Jul 26 2019 Fedora Release Engineering - 1.0.4-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Sat Feb 02 2019 Fedora Release Engineering - 1.0.4-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Mon Nov 19 2018 Ankur Sinha - 1.0.4-2 -- Fix file list to cater to different py3 versions - -* Sun Nov 18 2018 Ankur Sinha - 1.0.4-1 -- Only install py2 files conditionally -- Initial build -- Correct license diff --git a/sources b/sources deleted file mode 100644 index 4fa7b2f..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -SHA512 (pygiftiio-1.0.4.tar.gz) = cf5397ab971d89f1caac8f51d515ede47ad289f4ee49c5e9bedb647ce1d334b1bbe1992816607859dde11c14c40e5322d69f2e1f71c2d5efe30bf2ee9951c83e