--- util/cmake/SeqAnBuildSystem-orig.cmake	2013-11-20 10:46:58.000000000 +0100
+++ util/cmake/SeqAnBuildSystem.cmake	2014-06-14 22:28:18.112533516 +0200
@@ -308,6 +308,7 @@
     else ()
         set (SEQAN_PREFIX_SHARE "share/${APP_NAME}")
         set (SEQAN_PREFIX_SHARE_DOC "share/doc/${APP_NAME}")
+        set (SEQAN_PREFIX_SHARE_DOC "share/doc/seqan/${APP_NAME}")
     endif ()
 endmacro (seqan_setup_install_vars)