From d81a07ca64a8dd478443a99bdaf4d93f4e0967e7 Mon Sep 17 00:00:00 2001
From: Antonio Trande <sagitter@fedoraproject.org>
Date: Tue, 30 Jan 2024 21:03:03 +0100
Subject: [PATCH] Switch back to old CMake style

---
 seqan2.spec | 37 +++++++++++++++++++++++++++++++++----
 1 file changed, 33 insertions(+), 4 deletions(-)

diff --git a/seqan2.spec b/seqan2.spec
index 8ccf6df..1c59c8a 100644
--- a/seqan2.spec
+++ b/seqan2.spec
@@ -1,3 +1,5 @@
+%global __cmake_in_source_build 1
+
 # Tests need Python2 to be executed
 %global with_check 0
 
@@ -157,8 +159,33 @@ cp -p apps/rabema/COPYING apps/rabema/rabema-COPYING
 rm -rf util/py_lib/seqan/dox/tpl/lib/font-awesome/*
 
 %build
+mkdir -p build/library && pushd build/library
 SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS"
-%cmake -Wno-dev \
+%cmake \
+ -DCMAKE_CXX_FLAGS_RELEASE:STRING="$SEQAN_OPT_FLAGS -DNDEBUG" \
+ -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \
+ -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/%{name} \
+ -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/%{name} \
+ -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \
+ -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \
+ -DBUILD_SHARED_LIBS:BOOL=OFF \
+ -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES \
+ -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \
+ -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_LIBRARY \
+ -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON \
+ -DZLIB_INCLUDE_DIR:PATH=%{_includedir} -DZLIB_LIBRARY:FILEPATH=%{_libdir}/libz.so \
+ -DBZIP2_INCLUDE_DIR:PATH=%{_includedir} -DBZIP2_LIBRARY:FILEPATH=%{_libdir}/libbz2.so \
+ -DBoost_INCLUDE_DIR:PATH=%{_includedir} -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \
+ -DSPHINX_EXECUTABLE:FILEPATH=%{_bindir}/sphinx-build \
+ -DSPHINX_MAN_OUTPUT:BOOL=ON \
+ -DSPHINX_TEXT_OUTPUT:BOOL=ON \
+ -DYARA_LARGE_CONTIGS:BOOL=OFF ../..
+%make_build
+popd
+
+mkdir -p build/Release && pushd build/Release
+SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS"
+%cmake \
  -DCMAKE_CXX_FLAGS_RELEASE:STRING="$SEQAN_OPT_FLAGS -DNDEBUG" \
  -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \
  -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/%{name} \
@@ -176,11 +203,13 @@ SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS"
  -DYARA_LARGE_CONTIGS:BOOL=OFF \
  -DSPHINX_EXECUTABLE:FILEPATH=%{_bindir}/sphinx-build \
  -DSPHINX_MAN_OUTPUT:BOOL=ON \
- -DSPHINX_TEXT_OUTPUT:BOOL=ON
-%cmake_build
+ -DSPHINX_TEXT_OUTPUT:BOOL=ON ../..
+# Disable parallel Make jobs to prevent compiler errors
+make -O -j1
 
 %install
-%cmake_install
+%make_install -C build/library
+%make_install -C build/Release
 
 # Unbundle font-awesome fonts
 %if 0%{?with_doc}