Deprecated by seqan3

Switch back to old CMake style
Fix CMake commands
2024-02-04 17:41:15 +01:00 · 2024-01-30 21:03:03 +01:00 · 2024-01-30 19:56:17 +01:00 · 2024-01-30 19:00:11 +01:00 · 2024-01-29 20:05:40 -07:00 · 2024-01-27 02:35:31 +00:00
7 changed files with 1 additions and 534 deletions
--- a/.gitignore
+++ b/.gitignore
@ -1,2 +0,0 @@
-/seqan-8a875d71478a464de5ac3bcf2707f46819285a1f.zip
-/seqan-seqan-v2.4.0.tar.gz
--- a/dead.package
+++ b/dead.package
@ -0,0 +1 @@
+Deprecated by seqan3
--- a/seqan-disable_stripping.patch
+++ b/seqan-disable_stripping.patch
@ -1,11 +0,0 @@
--- util/cmake/SeqAnBuildSystem.orig.cmake	2018-01-03 13:42:33.000000000 +0100
-+++ util/cmake/SeqAnBuildSystem.cmake	2018-01-06 17:12:26.494120190 +0100
-@@ -339,7 +339,7 @@
-         (NOT SEQAN_BUILD_SYSTEM STREQUAL "DEVELOP") AND
-         (NOT APPLE) AND
-         (COMPILER_CLANG OR COMPILER_GCC))
-        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -s")
-+        set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}")
-     endif ()
- 
-     # search dependencies once, globally, if in DEVELOP
--- a/seqan2-set_awk_installation.patch
+++ b/seqan2-set_awk_installation.patch
@ -1,17 +0,0 @@
--- apps/ngs_roi/CMakeLists.orig.txt	2018-01-03 13:42:33.000000000 +0100
-+++ apps/ngs_roi/CMakeLists.txt	2018-01-13 12:12:41.328240486 +0100
-@@ -86,9 +86,13 @@
-                  tool_shed/roi_sort.sh
-                  # PDF plot script helper.
-                  tool_shed/roi_plot_9.sh
-+         DESTINATION ${CMAKE_INSTALL_BINDIR})
-+
-+# Install helper scripts into ${SHARE_INSTALL_PREFIX}/seqan2 directory.
-+install (FILES # PDF plot script helper.
-                  tool_shed/plot.awk
-                  tool_shed/ps2pswLinks.gawk
-         DESTINATION ${CMAKE_INSTALL_BINDIR})
-+         DESTINATION ${SHARE_INSTALL_PREFIX}/seqan2/pdf_plot_helper)
- 
- # Install non-binary files for the package to "." for app builds and
- # ${PREFIX}/share/doc/ngs_roi for SeqAn release builds.
--- a/seqan2-set_config_filepath.patch
+++ b/seqan2-set_config_filepath.patch
@ -1,24 +0,0 @@
--- util/cmake/SeqAnBuildSystem.orig.cmake	2018-01-11 12:32:45.591134000 +0100
-+++ util/cmake/SeqAnBuildSystem.cmake	2018-01-11 12:51:55.193282581 +0100
-@@ -399,10 +399,10 @@
-         # Install pkg-config file, except on Windows.
-         if (NOT CMAKE_SYSTEM_NAME MATCHES Windows)
-             configure_file("util/pkgconfig/seqan.pc.in" "${CMAKE_BINARY_DIR}/util/pkgconfig/seqan-${SEQAN_VERSION_MAJOR}.pc" @ONLY)
-            install(FILES "${CMAKE_BINARY_DIR}/util/pkgconfig/seqan-${SEQAN_VERSION_MAJOR}.pc" DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/pkgconfig)
-+            install(FILES "${CMAKE_BINARY_DIR}/util/pkgconfig/seqan-${SEQAN_VERSION_MAJOR}.pc" DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig)
-         endif (NOT CMAKE_SYSTEM_NAME MATCHES Windows)
-         # Install FindSeqAn TODO(h-2) rename seqan-config.cmake to seqan-config${SEQAN_VERSION_MAJOR}.cmake after 2.x cycle
-        install(FILES "${CMAKE_CURRENT_SOURCE_DIR}/util/cmake/seqan-config.cmake" DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/cmake/seqan/)
-+        install(FILES "${CMAKE_CURRENT_SOURCE_DIR}/util/cmake/seqan-config.cmake" DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/seqan2/)
- 
-         # Install headers
-         file (GLOB HEADERS
-@@ -473,7 +473,7 @@
-             set (CMAKE_INSTALL_DOCDIR "${CMAKE_INSTALL_DATAROOTDIR}/doc" CACHE STRING "Documentation root (DATAROOTDIR/doc)" FORCE)
-         endif ()
-         set (SEQAN_PREFIX_SHARE "${CMAKE_INSTALL_DATADIR}/${APP_NAME}")
-        set (SEQAN_PREFIX_SHARE_DOC "${CMAKE_INSTALL_DOCDIR}/${APP_NAME}")
-+        set (SEQAN_PREFIX_SHARE_DOC "${CMAKE_INSTALL_PREFIX}/libexec/seqan2/examples/${APP_NAME}")
-     endif ()
- endmacro (seqan_setup_install_vars)
- 
--- a/seqan2.spec
+++ b/seqan2.spec
@ -1,479 +0,0 @@
-%global __cmake_in_source_build 1
-
-# Default ld_as_needed flag breaks executables linkage
-%undefine _ld_as_needed
-
-# Tests need Python2 to be executed
-%global with_check 0
-
-# Documentation needs Python2 to be built
-%global with_doc 0
-Obsoletes: seqan2-doc < 0:2.4.0-8
-
-Name:      seqan2
-Summary:   C++ library of efficient algorithms and data structures
-Version:   2.4.0
-Release:   18%{?dist}
-License:   BSD
-URL:       http://www.seqan.de/
-Source0:   https://github.com/seqan/seqan/archive/seqan-v%{version}.tar.gz#/seqan-seqan-v%{version}.tar.gz
-
-# Disable automatic stripping on no-DEVELOP seqan build systems 
-Patch0: seqan-disable_stripping.patch
-
-# Set paths of seqan-2.pc and seqan-config.cmake
-Patch1: %{name}-set_config_filepath.patch
-
-# Set paths of plot.awk and ps2pswLinks.gawk files
-Patch2: %{name}-set_awk_installation.patch
-
-BuildRequires: make
-BuildRequires: qt4-devel
-BuildRequires: cmake, gcc-c++
-BuildRequires: llvm-devel
-BuildRequires: bzip2-devel
-BuildRequires: zlib-devel
-BuildRequires: boost-devel
-BuildRequires: coin-or-lemon-devel
-BuildRequires: libstdc++-static
-BuildRequires: python3-devel
-
-## Test
-%if 0%{?with_check}
-BuildRequires: python3-nose
-BuildRequires: python3-pytest
-BuildRequires: python3-jinja2
-%endif
-
-## Bundled files exception https://fedorahosted.org/fpc/ticket/174
-Provides: bundled(gnulib)
-
-%description
-SeqAn (version 2.x.x) is an open source C++ library of efficient algorithms
-and data structures for the analysis of sequences with the focus on
-biological data. 
-Our library applies a unique generic design that guarantees high performance, 
-generality, extensibility, and integration with other libraries.
-
-As such, it contains algorithms and data structures for
-
- * string representation and their manipluation,
- * online and indexed string search,
- * efficient I/O of bioinformatics file formats,
- * sequence alignments, and
- * many, many more.
-
-
-%package apps
-Summary: SeqAn (2.x.x) applications
-
-## Seqan apps are licenses under BSD and GPLv3+ and LGPLv3+.
-#
-# BSD (3-clauses): alf, bs_tools, fiona, fx_tools, gustaf
-# insegt, mason2, ngs_roi, param_chooser, rabema, razers3
-# sak, sam2matrix, samcat, searchjoin, seqcons2, yara
-# ngs_roi, pair_align, ngs_roi.
-#
-# GPLv3+: rabema.
-#
-# LGPLv3+: dfi, insegt, micro_razers, pair_align
-# param_chooser, razers, razers3, rep_sep, sak
-# seqan_tcoffee, sgip, snp_store, splazers, stellar
-# tree_recon.
-##
-# LGPLv3 gives you permission to relicense the code under GPLv3
-# BSD (3-clauses) is compatible with GPLv3
-# We can use a collective license:
-License:  GPLv3+ and BSD and LGPLv3+
-Requires: gawk%{?_isa}
-
-# 'seqan2' is the most recent version of 'SeqAn'
-Obsoletes: seqan <= 0:1.4.2
-Provides:  seqan =  0:%{version}-%{release}
-
-%description apps
-All SeqAn applications.
-
-%package headers
-Summary: SeqAn (2.x.x) headers only files
-
-# bzip2stream and zipstream libraries are distributed under zlib/libpng
-# basic/boost*.h libraries are distributed under Boost
-# bam_io/bam_index_bai.h is distributed under MIT
-# Although Boost, zlib, MIT are GPL compatible, they're all tagged anyway
-License:   GPLv3+ and BSD and MIT and LGPLv3+ and zlib and Boost
-
-Provides: bundled(bzip2stream)
-Provides: bundled(zipstream)
-
-%description headers
-C headers files of SeqAn, including pkconfig and CMake configuration files.
-
-%package examples
-Summary: SeqAn (2.x.x) examples
-Requires: %{name}-apps%{?_isa} = %{version}-%{release}
-%description examples
-Testing files of SeqAn2's apps.
-
-%if 0%{?with_doc}
-%package doc
-Summary: SeqAn (2.x.x) documentation
-
-# 3L is licensed under MIT
-# Less and bootstrap files is licensed under ASL 2.0
-# jquery-bbq are licensed under LGPLv3+
-License: LGPLv3+ and MIT and ASL 2.0
-BuildRequires: python3-sphinx
-BuildRequires: python3-sphinx_rtd_theme
-Requires: fontawesome-fonts-web
-BuildArch: noarch
-
-# https://github.com/mateuszkocz/3l
-Provides: bundled(3l) = 1.4.4
-
-# http://lesscss.org/
-Provides: bundled(less) = 1.3.3
-
-# http://twbs.github.com/bootstrap
-Provides: bundled(bootstrap) = 3.0.0
-
-Obsoletes: seqan-doc <= 0:1.4.2
-Provides:  seqan-doc =  0:%{version}-%{release}
-%description doc
-Info files of SeqAn2's apps.
-%endif
-
-%prep
-%autosetup -p0 -n seqan-seqan-v%{version}
-
-## Remove spurious executable permissions
-find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" \) -exec  chmod -x {} ';'
-
-## Renamed each single license file 
-for appID in `ls apps/ | grep -v CMakeLists`; do
- cp -p apps/$appID/LICENSE apps/$appID/$appID-LICENSE
-done
-cp -p apps/rabema/COPYING apps/rabema/rabema-COPYING
-
-# Unbundle font-awesome fonts
-rm -rf util/py_lib/seqan/dox/tpl/lib/font-awesome/*
-
-%build
-mkdir -p build/library && pushd build/library
-SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS"
-%cmake \
- -DCMAKE_CXX_FLAGS_RELEASE:STRING="$SEQAN_OPT_FLAGS -DNDEBUG" \
- -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \
- -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/%{name} \
- -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/%{name} \
- -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \
- -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \
- -DBUILD_SHARED_LIBS:BOOL=OFF \
- -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES \
- -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \
- -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_LIBRARY \
- -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON \
- -DZLIB_INCLUDE_DIR:PATH=%{_includedir} -DZLIB_LIBRARY:FILEPATH=%{_libdir}/libz.so \
- -DBZIP2_INCLUDE_DIR:PATH=%{_includedir} -DBZIP2_LIBRARY:FILEPATH=%{_libdir}/libbz2.so \
- -DLEMON_INCLUDE_DIR:PATH=%{_includedir} -DLEMON_LIBRARY:FILEPATH=%{_libdir}/libemon.so \
- -DBoost_INCLUDE_DIR:PATH=%{_includedir} -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \
- -DSPHINX_EXECUTABLE:FILEPATH=%{_bindir}/sphinx-build \
- -DSPHINX_MAN_OUTPUT:BOOL=ON \
- -DSPHINX_TEXT_OUTPUT:BOOL=ON \
- -DYARA_LARGE_CONTIGS:BOOL=OFF ../..
-%make_build
-popd
-
-mkdir -p build/Release && pushd build/Release
-SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS"
-%cmake \
- -DCMAKE_CXX_FLAGS_RELEASE:STRING="$SEQAN_OPT_FLAGS -DNDEBUG" \
- -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \
- -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/%{name} \
- -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/%{name} \
- -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \
- -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \
- -DBUILD_SHARED_LIBS:BOOL=OFF \
- -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES \
- -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \
- -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_APPS \
- -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON \
- -DZLIB_INCLUDE_DIR:PATH=%{_includedir} -DZLIB_LIBRARY:FILEPATH=%{_libdir}/libz.so \
- -DBZIP2_INCLUDE_DIR:PATH=%{_includedir} -DBZIP2_LIBRARY:FILEPATH=%{_libdir}/libbz2.so \
- -DLEMON_INCLUDE_DIR:PATH=%{_includedir} -DLEMON_LIBRARY:FILEPATH=%{_libdir}/libemon.so \
- -DBoost_INCLUDE_DIR:PATH=%{_includedir} -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \
- -DYARA_LARGE_CONTIGS:BOOL=OFF \
- -DSPHINX_EXECUTABLE:FILEPATH=%{_bindir}/sphinx-build \
- -DSPHINX_MAN_OUTPUT:BOOL=ON \
- -DSPHINX_TEXT_OUTPUT:BOOL=ON ../..
-# Disable parallel Make jobs to prevent compiler errors
-make -O -j1
-
-%install
-%make_install -C build/library
-%make_install -C build/Release
-
-# Unbundle font-awesome fonts
-%if 0%{?with_doc}
-ln -s %{_datadir}/font-awesome/scss %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/scss
-ln -s %{_datadir}/font-awesome/css %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/css
-ln -s %{_datadir}/font-awesome/fonts %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/fonts
-ln -s %{_datadir}/font-awesome/less %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/less
-%endif
-
-## Fix executable permissions
-chmod a+x %{buildroot}%{_bindir}/*
-
-# Set permissions and make symlinks of plot.awk and ps2pswLinks.gawk files
-ln -s %{_datadir}/%{name}/pdf_plot_helper/plot.awk %{buildroot}%{_bindir}/plot.awk
-ln -s %{_datadir}/%{name}/pdf_plot_helper/ps2pswLinks.gawk %{buildroot}%{_bindir}/ps2pswLinks.gawk
-
-## Remove unnecessary files
-rm -rf %{buildroot}%{_libexecdir}/seqan2/examples/ngs_roi/R
-rm -f %{buildroot}%{_datadir}/doc/seqan2/LICENSE
-rm -f %{buildroot}%{_datadir}/doc/seqan2/CHANGELOG.rst
-rm -f %{buildroot}%{_datadir}/doc/seqan2/README.rst
-
-%if 0%{?with_check}
-%check
-pushd build/Release
-ctest --force-new-ctest-process -VV --parallel %{?_smp_mflags} -E app_test_fiona
-%endif
-
-%files apps
-%license LICENSE
-%license apps/*/*-LICENSE apps/rabema/rabema-COPYING
-%doc README.rst CHANGELOG.rst
-%{_bindir}/*
-%{_mandir}/man1/*
-%dir %{_datadir}/%{name}
-%dir %{_datadir}/%{name}/pdf_plot_helper
-%defattr(0444, root, root)
-%{_datadir}/%{name}/pdf_plot_helper/plot.awk
-%{_datadir}/%{name}/pdf_plot_helper/ps2pswLinks.gawk
-
-%files headers
-%license include/seqan/LICENSE
-%doc README.rst CHANGELOG.rst
-%{_includedir}/%{name}/
-%{_libdir}/cmake/%{name}/
-%{_libdir}/pkgconfig/seqan-2.pc
-
-%files examples
-%{_libexecdir}/%{name}/
-%exclude %{_libexecdir}/%{name}/examples/*/LICENSE
-
-%if 0%{?with_doc}
-%files doc
-%license LICENSE
-%doc README.rst CHANGELOG.rst
-%{_pkgdocdir}/
-%endif
-
-%changelog
-* Sat Jul 23 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-18
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
-
-* Sun Jul 10 2022 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-17
- Drop Java dependency (rhbz#2104101)
-
-* Sat Feb 05 2022 Jiri Vanek <jvanek@redhat.com> - 2.4.0-16
- Rebuilt for java-17-openjdk as system jdk
-
-* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-15
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
-
-* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-14
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Tue Mar 30 2021 Jonathan Wakely <jwakely@redhat.com> - 2.4.0-13
- Rebuilt for removed libstdc++ symbol (#1937698)
-
-* Wed Jan 27 2021 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-12
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Sat Aug 01 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-11
- Second attempt - Rebuilt for
-  https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Wed Jul 29 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-10
- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild
-
-* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-9
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
-
-* Fri Nov 15 2019 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-8
- Switch to Python3
- Disable documentation build
- Disable check
-
-* Sat Feb 02 2019 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-7
- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
-
-* Mon Oct 15 2018 Miro Hrončok <mhroncok@redhat.com> - 2.4.0-6
- Remove build dependency on python2-sphinxcontrib-bibtex
-
-* Sun Oct 07 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-5
- Undefine ld_as_needed flag
-
-* Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
-
-* Wed Mar 07 2018 Adam Williamson <awilliam@redhat.com> - 2.4.0-3
- Rebuild to fix GCC 8 mis-compilation
-  See https://da.gd/YJVwk ("GCC 8 ABI change on x86_64")
-
-* Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 2.4.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
-
-* Fri Feb 02 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-1
- Update to version 2.4.0
-
-* Wed Jan 17 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-0.4.20180103git8a875d
- Fix dependencies
-
-* Tue Jan 16 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-0.3.20180103git8a875d
- Split off applications in a single sub-package
- Devel rpm renamed seqan-headers
-
-* Sat Jan 13 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-0.2.20180103git8a875d
- plot.awk/ps2pswLinks.gawk installed in a private share datadir
- plot.awk/ps2pswLinks.gawk symliked in '_bindir'
- Renamed each single license file
-
-* Wed Jan 10 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.4.0-0.1.20180103git8a875d
- Pre-released as seqan-2.4.0
- Add gcc-c++ BR
- Remove unnecessary R files
- Unbundle font-awesome
- Apps/libraries licensing commented
-
-* Mon Jan 08 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.3.2-3.20180103git8a875d
- Documentation still disabled
-
-* Wed Jan 03 2018 Antonio Trande <sagitter@fedoraproject.org> - 2.3.2-2.20180103git8a875d
- Build devel commit #8a875d
- Add manually -DNDEBUG flag
-
-* Wed Sep 20 2017 Antonio Trande <sagitter@fedoraproject.org> - 2.3.2-1
- Update to 2.3.2
-
-* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.2-33
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
-
-* Sun Jul 30 2017 Florian Weimer <fweimer@redhat.com> - 1.4.2-32
- Rebuild with binutils fix for ppc64le (#1475636)
-
-* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.2-31
- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
-
-* Tue Jul 04 2017 Jonathan Wakely <jwakely@redhat.com> - 1.4.2-30
- Rebuilt for Boost 1.64
-
-* Mon May 15 2017 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.2-29
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild
-
-* Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.2-28
- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
-
-* Fri Jan 27 2017 Jonathan Wakely <jwakely@redhat.com> - 1.4.2-27
- Rebuilt for Boost 1.63
-
-* Sat Nov 12 2016 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-26
- Skip tests on s390 and ppc
-
-* Sat Nov 12 2016 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-25
- Skip failed tests
-
-* Sat Feb 20 2016 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-24
- Fixed compiler/linker flags
-
-* Thu Feb 04 2016 Fedora Release Engineering <releng@fedoraproject.org> - 1.4.2-23
- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
-
-* Fri Jan 15 2016 Jonathan Wakely <jwakely@redhat.com> - 1.4.2-22
- Rebuilt for Boost 1.60
-
-* Wed Oct 21 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-21
- Actived hardened build
-
-* Tue Oct 13 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-20
- Rebuilt for cmake 3.4.0
- Used %%license
-
-* Thu Aug 27 2015 Jonathan Wakely <jwakely@redhat.com> - 1.4.2-19
- Rebuilt for Boost 1.59
-
-* Wed Jul 29 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.2-18
- Rebuilt for https://fedoraproject.org/wiki/Changes/F23Boost159
-
-* Sat Jul 18 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-17
- Parallel make always disabled
-
-* Sat Jul 18 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-16
- Rebuild for Boost upgrade to 1.58.0
-
-* Fri Jun 19 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.2-15
- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
-
-* Fri May 15 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-14
- Reduce optimization to -O0 (cc1plus error persists)
-
-* Fri May 15 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-13
- SPEC cleanups
-
-* Fri May 15 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-12
- Removed -pipe flag because of cc1plus error on ARMs
-
-* Thu May 14 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-11
- Set job=1 to Make on ARMs aarch64 ppc64 ppc64le
-
-* Thu May 14 2015 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-10
- Downgrading to 1.4.2
- Excluded s390 s390x arches
- Excluded bstools_test on ARMs aarch64 ppc64 ppc64le
-
-* Mon Jan 26 2015 Petr Machata <pmachata@redhat.com> - 1.4.2-9
- Rebuild for boost 1.57.0
-
-* Tue Dec 02 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-8
- Excluded bs_tools test on ARM
-
-* Mon Dec 01 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-7
- Parallel tests not performed on ARM
-
-* Mon Dec 01 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-6
- DBUILD_SHARED_LIBS boolean disabled
- Test enabled
-
-* Tue Nov 25 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-5
- Parallel make excluded on ARM arch
-
-* Tue Nov 25 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-4
- Tests disabled temporarily
-
-* Sat Nov 22 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-3
- Packaged private libraries
- Performed tests
- Splazers and fiona tests excluded
-
-* Sat Nov 22 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-2
- Parallel make excluded on ARM arch
-
-* Fri Nov 21 2014 Antonio Trande <sagitter@fedoraproject.org> - 1.4.2-1
- Update to 1.4.2
- Fixed cmake compiler flags
- Fixed declaration of multiple license
- A doc sub-package is now built
-
-* Mon Aug 18 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 1.4.1-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
-
-* Sat Jun 14 2014 Antonio Trande <sagitter@fedoraproject.org> 1.4.1-2
- Added 'Provides:bundled(gnulib)'
- Changed find command for executable permissions fixing
- Use %%make_install 
- Fixed wrong-file-end-of-line-encoding warnings
- 
-* Wed Jun 11 2014 Antonio Trande <sagitter@fedoraproject.org> 1.4.1-1
- First package
--- a/1
+++ b/1
@ -1 +0,0 @@
-SHA512 (seqan-seqan-v2.4.0.tar.gz) = f92cfc97304581920850c5d49fe4336f7c3855e99c3bcb035b6172fa7307e08e6f06fb06d1cd8f5b447c3220fc7f669684fbfe25641b43e9f6953999cf9ddd4b
Author	SHA1	Message	Date
Antonio Trande	f7dd97f116	Deprecated by seqan3	2024-02-04 17:41:15 +01:00
Antonio Trande	d81a07ca64	Switch back to old CMake style	2024-01-30 21:03:03 +01:00
Antonio Trande	fe3bf7292c	Fix CMake commands	2024-01-30 19:56:17 +01:00
Antonio Trande	5217bd1646	Change CMake commands	2024-01-30 19:00:11 +01:00
Jerry James	0e48e9628a	Remove unused dependency on coin-or-lemon Other changes: - Convert License fields to SPDX - Stop building for 32-bit x86 - Depend on fontawesome4 for F39+, not fontawesome - The headers subpackage needs bzip2-devel and zlib-devel - Fix a few typos	2024-01-29 20:05:40 -07:00
Fedora Release Engineering	d8402e87f8	Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild	2024-01-27 02:35:31 +00:00
Fedora Release Engineering	583e22b2ef	Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild Signed-off-by: Fedora Release Engineering <releng@fedoraproject.org>	2023-07-22 01:25:32 +00:00
Fedora Release Engineering	a719a19f10	Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild Signed-off-by: Fedora Release Engineering <releng@fedoraproject.org>	2023-01-21 03:00:37 +00:00
				`@ -1 +0,0 @@`
				`SHA512 (seqan-seqan-v2.4.0.tar.gz) = f92cfc97304581920850c5d49fe4336f7c3855e99c3bcb035b6172fa7307e08e6f06fb06d1cd8f5b447c3220fc7f669684fbfe25641b43e9f6953999cf9ddd4b`