diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..6d8e8ca --- /dev/null +++ b/.gitignore @@ -0,0 +1,2 @@ +/seqan-8a875d71478a464de5ac3bcf2707f46819285a1f.zip +/seqan-seqan-v2.4.0.tar.gz diff --git a/dead.package b/dead.package deleted file mode 100644 index 05f1181..0000000 --- a/dead.package +++ /dev/null @@ -1 +0,0 @@ -Deprecated by seqan3 diff --git a/seqan-disable_stripping.patch b/seqan-disable_stripping.patch new file mode 100644 index 0000000..6b79443 --- /dev/null +++ b/seqan-disable_stripping.patch @@ -0,0 +1,11 @@ +--- util/cmake/SeqAnBuildSystem.orig.cmake 2018-01-03 13:42:33.000000000 +0100 ++++ util/cmake/SeqAnBuildSystem.cmake 2018-01-06 17:12:26.494120190 +0100 +@@ -339,7 +339,7 @@ + (NOT SEQAN_BUILD_SYSTEM STREQUAL "DEVELOP") AND + (NOT APPLE) AND + (COMPILER_CLANG OR COMPILER_GCC)) +- set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -s") ++ set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS}") + endif () + + # search dependencies once, globally, if in DEVELOP diff --git a/seqan2-set_awk_installation.patch b/seqan2-set_awk_installation.patch new file mode 100644 index 0000000..ef361d0 --- /dev/null +++ b/seqan2-set_awk_installation.patch @@ -0,0 +1,17 @@ +--- apps/ngs_roi/CMakeLists.orig.txt 2018-01-03 13:42:33.000000000 +0100 ++++ apps/ngs_roi/CMakeLists.txt 2018-01-13 12:12:41.328240486 +0100 +@@ -86,9 +86,13 @@ + tool_shed/roi_sort.sh + # PDF plot script helper. + tool_shed/roi_plot_9.sh ++ DESTINATION ${CMAKE_INSTALL_BINDIR}) ++ ++# Install helper scripts into ${SHARE_INSTALL_PREFIX}/seqan2 directory. ++install (FILES # PDF plot script helper. + tool_shed/plot.awk + tool_shed/ps2pswLinks.gawk +- DESTINATION ${CMAKE_INSTALL_BINDIR}) ++ DESTINATION ${SHARE_INSTALL_PREFIX}/seqan2/pdf_plot_helper) + + # Install non-binary files for the package to "." for app builds and + # ${PREFIX}/share/doc/ngs_roi for SeqAn release builds. diff --git a/seqan2-set_config_filepath.patch b/seqan2-set_config_filepath.patch new file mode 100644 index 0000000..1a48e7d --- /dev/null +++ b/seqan2-set_config_filepath.patch @@ -0,0 +1,24 @@ +--- util/cmake/SeqAnBuildSystem.orig.cmake 2018-01-11 12:32:45.591134000 +0100 ++++ util/cmake/SeqAnBuildSystem.cmake 2018-01-11 12:51:55.193282581 +0100 +@@ -399,10 +399,10 @@ + # Install pkg-config file, except on Windows. + if (NOT CMAKE_SYSTEM_NAME MATCHES Windows) + configure_file("util/pkgconfig/seqan.pc.in" "${CMAKE_BINARY_DIR}/util/pkgconfig/seqan-${SEQAN_VERSION_MAJOR}.pc" @ONLY) +- install(FILES "${CMAKE_BINARY_DIR}/util/pkgconfig/seqan-${SEQAN_VERSION_MAJOR}.pc" DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/pkgconfig) ++ install(FILES "${CMAKE_BINARY_DIR}/util/pkgconfig/seqan-${SEQAN_VERSION_MAJOR}.pc" DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig) + endif (NOT CMAKE_SYSTEM_NAME MATCHES Windows) + # Install FindSeqAn TODO(h-2) rename seqan-config.cmake to seqan-config${SEQAN_VERSION_MAJOR}.cmake after 2.x cycle +- install(FILES "${CMAKE_CURRENT_SOURCE_DIR}/util/cmake/seqan-config.cmake" DESTINATION ${CMAKE_INSTALL_DATAROOTDIR}/cmake/seqan/) ++ install(FILES "${CMAKE_CURRENT_SOURCE_DIR}/util/cmake/seqan-config.cmake" DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/seqan2/) + + # Install headers + file (GLOB HEADERS +@@ -473,7 +473,7 @@ + set (CMAKE_INSTALL_DOCDIR "${CMAKE_INSTALL_DATAROOTDIR}/doc" CACHE STRING "Documentation root (DATAROOTDIR/doc)" FORCE) + endif () + set (SEQAN_PREFIX_SHARE "${CMAKE_INSTALL_DATADIR}/${APP_NAME}") +- set (SEQAN_PREFIX_SHARE_DOC "${CMAKE_INSTALL_DOCDIR}/${APP_NAME}") ++ set (SEQAN_PREFIX_SHARE_DOC "${CMAKE_INSTALL_PREFIX}/libexec/seqan2/examples/${APP_NAME}") + endif () + endmacro (seqan_setup_install_vars) + diff --git a/seqan2.spec b/seqan2.spec new file mode 100644 index 0000000..3208117 --- /dev/null +++ b/seqan2.spec @@ -0,0 +1,468 @@ +%global __cmake_in_source_build 1 + +# Default ld_as_needed flag breaks executables linkage +%undefine _ld_as_needed + +# Tests need Python2 to be executed +%global with_check 0 + +# Documentation needs Python2 to be built +%global with_doc 0 +Obsoletes: seqan2-doc < 0:2.4.0-8 + +Name: seqan2 +Summary: C++ library of efficient algorithms and data structures +Version: 2.4.0 +Release: 14%{?dist} +License: BSD +URL: http://www.seqan.de/ +Source0: https://github.com/seqan/seqan/archive/seqan-v%{version}.tar.gz#/seqan-seqan-v%{version}.tar.gz + +# Disable automatic stripping on no-DEVELOP seqan build systems +Patch0: seqan-disable_stripping.patch + +# Set paths of seqan-2.pc and seqan-config.cmake +Patch1: %{name}-set_config_filepath.patch + +# Set paths of plot.awk and ps2pswLinks.gawk files +Patch2: %{name}-set_awk_installation.patch + +BuildRequires: make +BuildRequires: qt4-devel +BuildRequires: cmake, gcc-c++ +BuildRequires: llvm-devel +BuildRequires: bzip2-devel +BuildRequires: zlib-devel +BuildRequires: boost-devel +BuildRequires: coin-or-lemon-devel +BuildRequires: libstdc++-static +BuildRequires: python3-devel +BuildRequires: java-1.8.0-openjdk-devel + +## Test +%if 0%{?with_check} +BuildRequires: python3-nose +BuildRequires: python3-pytest +BuildRequires: python3-jinja2 +%endif + +## Bundled files exception https://fedorahosted.org/fpc/ticket/174 +Provides: bundled(gnulib) + +%description +SeqAn (version 2.x.x) is an open source C++ library of efficient algorithms +and data structures for the analysis of sequences with the focus on +biological data. +Our library applies a unique generic design that guarantees high performance, +generality, extensibility, and integration with other libraries. + +As such, it contains algorithms and data structures for + + * string representation and their manipluation, + * online and indexed string search, + * efficient I/O of bioinformatics file formats, + * sequence alignments, and + * many, many more. + + +%package apps +Summary: SeqAn (2.x.x) applications + +## Seqan apps are licenses under BSD and GPLv3+ and LGPLv3+. +# +# BSD (3-clauses): alf, bs_tools, fiona, fx_tools, gustaf +# insegt, mason2, ngs_roi, param_chooser, rabema, razers3 +# sak, sam2matrix, samcat, searchjoin, seqcons2, yara +# ngs_roi, pair_align, ngs_roi. +# +# GPLv3+: rabema. +# +# LGPLv3+: dfi, insegt, micro_razers, pair_align +# param_chooser, razers, razers3, rep_sep, sak +# seqan_tcoffee, sgip, snp_store, splazers, stellar +# tree_recon. +## +# LGPLv3 gives you permission to relicense the code under GPLv3 +# BSD (3-clauses) is compatible with GPLv3 +# We can use a collective license: +License: GPLv3+ and BSD and LGPLv3+ +Requires: gawk%{?_isa} + +# 'seqan2' is the most recent version of 'SeqAn' +Obsoletes: seqan <= 0:1.4.2 +Provides: seqan = 0:%{version}-%{release} + +%description apps +All SeqAn applications. + +%package headers +Summary: SeqAn (2.x.x) headers only files + +# bzip2stream and zipstream libraries are distributed under zlib/libpng +# basic/boost*.h libraries are distributed under Boost +# bam_io/bam_index_bai.h is distributed under MIT +# Although Boost, zlib, MIT are GPL compatible, they're all tagged anyway +License: GPLv3+ and BSD and MIT and LGPLv3+ and zlib and Boost + +Provides: bundled(bzip2stream) +Provides: bundled(zipstream) + +%description headers +C headers files of SeqAn, including pkconfig and CMake configuration files. + +%package examples +Summary: SeqAn (2.x.x) examples +Requires: %{name}-apps%{?_isa} = %{version}-%{release} +%description examples +Testing files of SeqAn2's apps. + +%if 0%{?with_doc} +%package doc +Summary: SeqAn (2.x.x) documentation + +# 3L is licensed under MIT +# Less and bootstrap files is licensed under ASL 2.0 +# jquery-bbq are licensed under LGPLv3+ +License: LGPLv3+ and MIT and ASL 2.0 +BuildRequires: python3-sphinx +BuildRequires: python3-sphinx_rtd_theme +Requires: fontawesome-fonts-web +BuildArch: noarch + +# https://github.com/mateuszkocz/3l +Provides: bundled(3l) = 1.4.4 + +# http://lesscss.org/ +Provides: bundled(less) = 1.3.3 + +# http://twbs.github.com/bootstrap +Provides: bundled(bootstrap) = 3.0.0 + +Obsoletes: seqan-doc <= 0:1.4.2 +Provides: seqan-doc = 0:%{version}-%{release} +%description doc +Info files of SeqAn2's apps. +%endif + +%prep +%autosetup -p0 -n seqan-seqan-v%{version} + +## Remove spurious executable permissions +find . -perm /755 -type f \( -name "*.cpp" -o -name "*.h" \) -exec chmod -x {} ';' + +## Renamed each single license file +for appID in `ls apps/ | grep -v CMakeLists`; do + cp -p apps/$appID/LICENSE apps/$appID/$appID-LICENSE +done +cp -p apps/rabema/COPYING apps/rabema/rabema-COPYING + +# Unbundle font-awesome fonts +rm -rf util/py_lib/seqan/dox/tpl/lib/font-awesome/* + +%build +mkdir -p build/library && pushd build/library +SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS" +%cmake \ + -DCMAKE_CXX_FLAGS_RELEASE:STRING="$SEQAN_OPT_FLAGS -DNDEBUG" \ + -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \ + -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/%{name} \ + -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/%{name} \ + -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \ + -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \ + -DBUILD_SHARED_LIBS:BOOL=OFF \ + -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES \ + -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \ + -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_LIBRARY \ + -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON \ + -DZLIB_INCLUDE_DIR:PATH=%{_includedir} -DZLIB_LIBRARY:FILEPATH=%{_libdir}/libz.so \ + -DBZIP2_INCLUDE_DIR:PATH=%{_includedir} -DBZIP2_LIBRARY:FILEPATH=%{_libdir}/libbz2.so \ + -DLEMON_INCLUDE_DIR:PATH=%{_includedir} -DLEMON_LIBRARY:FILEPATH=%{_libdir}/libemon.so \ + -DBoost_INCLUDE_DIR:PATH=%{_includedir} -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \ + -DSPHINX_EXECUTABLE:FILEPATH=%{_bindir}/sphinx-build \ + -DSPHINX_MAN_OUTPUT:BOOL=ON \ + -DSPHINX_TEXT_OUTPUT:BOOL=ON \ + -DYARA_LARGE_CONTIGS:BOOL=OFF ../.. +%make_build +popd + +mkdir -p build/Release && pushd build/Release +SEQAN_OPT_FLAGS="$RPM_OPT_FLAGS" +%cmake \ + -DCMAKE_CXX_FLAGS_RELEASE:STRING="$SEQAN_OPT_FLAGS -DNDEBUG" \ + -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \ + -DCMAKE_INSTALL_DOCDIR:STRING=share/doc/%{name} \ + -DCMAKE_INSTALL_INCLUDEDIR:PATH=include/%{name} \ + -DSYSCONF_INSTALL_DIR:PATH=%{_sysconfdir} \ + -DSHARE_INSTALL_PREFIX:PATH=%{_datadir} \ + -DBUILD_SHARED_LIBS:BOOL=OFF \ + -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES \ + -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE \ + -DSEQAN_BUILD_SYSTEM:STRING=SEQAN_RELEASE_APPS \ + -DSEQAN_DISABLE_VERSION_CHECK:BOOL=ON \ + -DZLIB_INCLUDE_DIR:PATH=%{_includedir} -DZLIB_LIBRARY:FILEPATH=%{_libdir}/libz.so \ + -DBZIP2_INCLUDE_DIR:PATH=%{_includedir} -DBZIP2_LIBRARY:FILEPATH=%{_libdir}/libbz2.so \ + -DLEMON_INCLUDE_DIR:PATH=%{_includedir} -DLEMON_LIBRARY:FILEPATH=%{_libdir}/libemon.so \ + -DBoost_INCLUDE_DIR:PATH=%{_includedir} -DPYTHON_EXECUTABLE:FILEPATH=%{__python3} \ + -DYARA_LARGE_CONTIGS:BOOL=OFF \ + -DSPHINX_EXECUTABLE:FILEPATH=%{_bindir}/sphinx-build \ + -DSPHINX_MAN_OUTPUT:BOOL=ON \ + -DSPHINX_TEXT_OUTPUT:BOOL=ON ../.. +# Disable parallel Make jobs to prevent compiler errors +make -O -j1 + +%install +%make_install -C build/library +%make_install -C build/Release + +# Unbundle font-awesome fonts +%if 0%{?with_doc} +ln -s %{_datadir}/font-awesome/scss %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/scss +ln -s %{_datadir}/font-awesome/css %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/css +ln -s %{_datadir}/font-awesome/fonts %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/fonts +ln -s %{_datadir}/font-awesome/less %{buildroot}%{_pkgdocdir}/html/lib/font-awesome/less +%endif + +## Fix executable permissions +chmod a+x %{buildroot}%{_bindir}/* + +# Set permissions and make symlinks of plot.awk and ps2pswLinks.gawk files +ln -s %{_datadir}/%{name}/pdf_plot_helper/plot.awk %{buildroot}%{_bindir}/plot.awk +ln -s %{_datadir}/%{name}/pdf_plot_helper/ps2pswLinks.gawk %{buildroot}%{_bindir}/ps2pswLinks.gawk + +## Remove unnecessary files +rm -rf %{buildroot}%{_libexecdir}/seqan2/examples/ngs_roi/R +rm -f %{buildroot}%{_datadir}/doc/seqan2/LICENSE +rm -f %{buildroot}%{_datadir}/doc/seqan2/CHANGELOG.rst +rm -f %{buildroot}%{_datadir}/doc/seqan2/README.rst + +%if 0%{?with_check} +%check +pushd build/Release +ctest --force-new-ctest-process -VV --parallel %{?_smp_mflags} -E app_test_fiona +%endif + +%files apps +%license LICENSE +%license apps/*/*-LICENSE apps/rabema/rabema-COPYING +%doc README.rst CHANGELOG.rst +%{_bindir}/* +%{_mandir}/man1/* +%dir %{_datadir}/%{name} +%dir %{_datadir}/%{name}/pdf_plot_helper +%defattr(0444, root, root) +%{_datadir}/%{name}/pdf_plot_helper/plot.awk +%{_datadir}/%{name}/pdf_plot_helper/ps2pswLinks.gawk + +%files headers +%license include/seqan/LICENSE +%doc README.rst CHANGELOG.rst +%{_includedir}/%{name}/ +%{_libdir}/cmake/%{name}/ +%{_libdir}/pkgconfig/seqan-2.pc + +%files examples +%{_libexecdir}/%{name}/ +%exclude %{_libexecdir}/%{name}/examples/*/LICENSE + +%if 0%{?with_doc} +%files doc +%license LICENSE +%doc README.rst CHANGELOG.rst +%{_pkgdocdir}/ +%endif + +%changelog +* Fri Jul 23 2021 Fedora Release Engineering - 2.4.0-14 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild + +* Tue Mar 30 2021 Jonathan Wakely - 2.4.0-13 +- Rebuilt for removed libstdc++ symbol (#1937698) + +* Wed Jan 27 2021 Fedora Release Engineering - 2.4.0-12 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild + +* Sat Aug 01 2020 Fedora Release Engineering - 2.4.0-11 +- Second attempt - Rebuilt for + https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Wed Jul 29 2020 Fedora Release Engineering - 2.4.0-10 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Thu Jan 30 2020 Fedora Release Engineering - 2.4.0-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + +* Fri Nov 15 2019 Antonio Trande - 2.4.0-8 +- Switch to Python3 +- Disable documentation build +- Disable check + +* Sat Feb 02 2019 Fedora Release Engineering - 2.4.0-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + +* Mon Oct 15 2018 Miro Hrončok - 2.4.0-6 +- Remove build dependency on python2-sphinxcontrib-bibtex + +* Sun Oct 07 2018 Antonio Trande - 2.4.0-5 +- Undefine ld_as_needed flag + +* Sat Jul 14 2018 Fedora Release Engineering - 2.4.0-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + +* Wed Mar 07 2018 Adam Williamson - 2.4.0-3 +- Rebuild to fix GCC 8 mis-compilation + See https://da.gd/YJVwk ("GCC 8 ABI change on x86_64") + +* Fri Feb 09 2018 Fedora Release Engineering - 2.4.0-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + +* Fri Feb 02 2018 Antonio Trande - 2.4.0-1 +- Update to version 2.4.0 + +* Wed Jan 17 2018 Antonio Trande - 2.4.0-0.4.20180103git8a875d +- Fix dependencies + +* Tue Jan 16 2018 Antonio Trande - 2.4.0-0.3.20180103git8a875d +- Split off applications in a single sub-package +- Devel rpm renamed seqan-headers + +* Sat Jan 13 2018 Antonio Trande - 2.4.0-0.2.20180103git8a875d +- plot.awk/ps2pswLinks.gawk installed in a private share datadir +- plot.awk/ps2pswLinks.gawk symliked in '_bindir' +- Renamed each single license file + +* Wed Jan 10 2018 Antonio Trande - 2.4.0-0.1.20180103git8a875d +- Pre-released as seqan-2.4.0 +- Add gcc-c++ BR +- Remove unnecessary R files +- Unbundle font-awesome +- Apps/libraries licensing commented + +* Mon Jan 08 2018 Antonio Trande - 2.3.2-3.20180103git8a875d +- Documentation still disabled + +* Wed Jan 03 2018 Antonio Trande - 2.3.2-2.20180103git8a875d +- Build devel commit #8a875d +- Add manually -DNDEBUG flag + +* Wed Sep 20 2017 Antonio Trande - 2.3.2-1 +- Update to 2.3.2 + +* Thu Aug 03 2017 Fedora Release Engineering - 1.4.2-33 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Sun Jul 30 2017 Florian Weimer - 1.4.2-32 +- Rebuild with binutils fix for ppc64le (#1475636) + +* Thu Jul 27 2017 Fedora Release Engineering - 1.4.2-31 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Tue Jul 04 2017 Jonathan Wakely - 1.4.2-30 +- Rebuilt for Boost 1.64 + +* Mon May 15 2017 Fedora Release Engineering - 1.4.2-29 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild + +* Sat Feb 11 2017 Fedora Release Engineering - 1.4.2-28 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild + +* Fri Jan 27 2017 Jonathan Wakely - 1.4.2-27 +- Rebuilt for Boost 1.63 + +* Sat Nov 12 2016 Antonio Trande - 1.4.2-26 +- Skip tests on s390 and ppc + +* Sat Nov 12 2016 Antonio Trande - 1.4.2-25 +- Skip failed tests + +* Sat Feb 20 2016 Antonio Trande - 1.4.2-24 +- Fixed compiler/linker flags + +* Thu Feb 04 2016 Fedora Release Engineering - 1.4.2-23 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + +* Fri Jan 15 2016 Jonathan Wakely - 1.4.2-22 +- Rebuilt for Boost 1.60 + +* Wed Oct 21 2015 Antonio Trande - 1.4.2-21 +- Actived hardened build + +* Tue Oct 13 2015 Antonio Trande - 1.4.2-20 +- Rebuilt for cmake 3.4.0 +- Used %%license + +* Thu Aug 27 2015 Jonathan Wakely - 1.4.2-19 +- Rebuilt for Boost 1.59 + +* Wed Jul 29 2015 Fedora Release Engineering - 1.4.2-18 +- Rebuilt for https://fedoraproject.org/wiki/Changes/F23Boost159 + +* Sat Jul 18 2015 Antonio Trande - 1.4.2-17 +- Parallel make always disabled + +* Sat Jul 18 2015 Antonio Trande - 1.4.2-16 +- Rebuild for Boost upgrade to 1.58.0 + +* Fri Jun 19 2015 Fedora Release Engineering - 1.4.2-15 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + +* Fri May 15 2015 Antonio Trande - 1.4.2-14 +- Reduce optimization to -O0 (cc1plus error persists) + +* Fri May 15 2015 Antonio Trande - 1.4.2-13 +- SPEC cleanups + +* Fri May 15 2015 Antonio Trande - 1.4.2-12 +- Removed -pipe flag because of cc1plus error on ARMs + +* Thu May 14 2015 Antonio Trande - 1.4.2-11 +- Set job=1 to Make on ARMs aarch64 ppc64 ppc64le + +* Thu May 14 2015 Antonio Trande - 1.4.2-10 +- Downgrading to 1.4.2 +- Excluded s390 s390x arches +- Excluded bstools_test on ARMs aarch64 ppc64 ppc64le + +* Mon Jan 26 2015 Petr Machata - 1.4.2-9 +- Rebuild for boost 1.57.0 + +* Tue Dec 02 2014 Antonio Trande - 1.4.2-8 +- Excluded bs_tools test on ARM + +* Mon Dec 01 2014 Antonio Trande - 1.4.2-7 +- Parallel tests not performed on ARM + +* Mon Dec 01 2014 Antonio Trande - 1.4.2-6 +- DBUILD_SHARED_LIBS boolean disabled +- Test enabled + +* Tue Nov 25 2014 Antonio Trande - 1.4.2-5 +- Parallel make excluded on ARM arch + +* Tue Nov 25 2014 Antonio Trande - 1.4.2-4 +- Tests disabled temporarily + +* Sat Nov 22 2014 Antonio Trande - 1.4.2-3 +- Packaged private libraries +- Performed tests +- Splazers and fiona tests excluded + +* Sat Nov 22 2014 Antonio Trande - 1.4.2-2 +- Parallel make excluded on ARM arch + +* Fri Nov 21 2014 Antonio Trande - 1.4.2-1 +- Update to 1.4.2 +- Fixed cmake compiler flags +- Fixed declaration of multiple license +- A doc sub-package is now built + +* Mon Aug 18 2014 Fedora Release Engineering - 1.4.1-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + +* Sat Jun 14 2014 Antonio Trande 1.4.1-2 +- Added 'Provides:bundled(gnulib)' +- Changed find command for executable permissions fixing +- Use %%make_install +- Fixed wrong-file-end-of-line-encoding warnings + +* Wed Jun 11 2014 Antonio Trande 1.4.1-1 +- First package diff --git a/sources b/sources new file mode 100644 index 0000000..e5459d5 --- /dev/null +++ b/sources @@ -0,0 +1 @@ +SHA512 (seqan-seqan-v2.4.0.tar.gz) = f92cfc97304581920850c5d49fe4336f7c3855e99c3bcb035b6172fa7307e08e6f06fb06d1cd8f5b447c3220fc7f669684fbfe25641b43e9f6953999cf9ddd4b