Rebuilt for https://fedoraproject.org/wiki/Fedora_45_Mass_Rebuild

Release 3.4.2
Release 3.4.0
2026-07-17 06:24:20 +00:00 · 2026-03-22 14:45:04 +01:00 · 2026-01-29 17:38:32 +01:00 · 2026-01-17 17:53:55 +00:00 · 2025-11-12 18:28:03 +01:00 · 2025-07-25 18:09:17 +00:00
5 changed files with 17 additions and 134 deletions
--- a/.gitignore
+++ b/.gitignore
@ -13,3 +13,5 @@
 /seqan3-3.4.0-rc.1.tar.gz
 /seqan3-3.4.0-rc.2.tar.gz
 /seqan3-3.4.0-rc.3.tar.gz
+/seqan3-3.4.0.tar.gz
+/seqan3-3.4.2.tar.gz
--- a/seqan3-3.4.0-disable_CPM.patch
+++ b/seqan3-3.4.0-disable_CPM.patch
@ -65,8 +65,8 @@
 +find_package(GTest REQUIRED)
 +find_package(benchmark REQUIRED)
 
- option (SEQAN3_FULL_HEADER_TEST "Test seqan3 headers as well as the headers of external libraries" OFF)
- 
+ # We compile each header twice in separate compilation units, where the second compilation omits the header guard (check
+ # for cyclic includes). Each alone is sufficient to test that the header is functional, but both are needed to check for
 --- a/test/performance/CMakeLists.orig.txt	2024-12-13 18:42:15.000000000 +0100
 +++ b/test/performance/CMakeLists.txt	2025-01-19 22:10:44.305669084 +0100
@@ -7,7 +7,7 @@
--- a/seqan3-fix_GCC15.patch
+++ b/seqan3-fix_GCC15.patch
@ -16,5 +16,5 @@
 #include <tuple>
 +#include <functional>
 
- #if defined(SEQAN3_HAS_BZIP2)
- #    include <seqan3/contrib/stream/bz2_istream.hpp>
+ #include <seqan3/contrib/stream/bgzf.hpp>
+ #include <seqan3/contrib/stream/bgzf_istream.hpp>
--- a/seqan3.spec
+++ b/seqan3.spec
@ -24,8 +24,8 @@ ExclusiveArch: %{power64} x86_64 aarch64

 Name:      seqan3
 Summary:   The modern C++ library for sequence analysis
-Version:   3.4.0
-Release:   0.5.rc3%{date}%{shortcommit}%{?dist}
+Version:   3.4.2
+Release:   %autorelease
 License:   BSD-3-Clause
 URL:       https://www.seqan.de/
 # Source code archive generated by:
@ -36,7 +36,7 @@ URL:       https://www.seqan.de/
 %if 0%{?middle_release}
 Source0:   https://github.com/seqan/%{name}/archive/%{commit}/%{name}-%{commit}.tar.gz
 %else
-Source0:   https://github.com/seqan/%{name}/archive/%{version}-rc.2/%{name}-%{version}-rc.3.tar.gz
+Source0:   https://github.com/seqan/%{name}/archive/%{version}/%{name}-%{version}.tar.gz
 %endif

 BuildRequires: gcc
@ -57,13 +57,10 @@ BuildRequires: gtest-devel >= 1.10.0
 BuildRequires: texlive-newunicodechar
 BuildRequires: doxygen >= 1.9.4
 %endif
-
 # Use Fedora's CMake only
-Patch1: seqan3-3.4.0-disable_CPM.patch
-
+Patch1: %{name}-3.4.0-disable_CPM.patch
 # Include missing header files
-Patch2: seqan3-fix_GCC15.patch
-
+Patch2: %{name}-fix_GCC15.patch
 %description
 SeqAn3 is the new version of the popular SeqAn template
 library for the analysis of biological sequences.
@ -86,10 +83,8 @@ Requires: sdsl-lite-devel%{?_isa} >= 3.0.1
 Requires: zlib-devel%{?_isa} >= 1.2
 Requires: bzip2-devel%{?_isa} >= 1.0
 Requires: range-v3-devel%{?_isa} >= 0.11.0
-
 Provides: bundled(bzip2stream)
 Provides: bundled(zipstream)
-
 %description devel
 C++ headers files of SeqAn3, including CMake configuration files.

@ -100,7 +95,7 @@ BuildArch: noarch
 SeqAn3 documentation.

 %prep
-%autosetup -n %{name}-%{version}-rc.3 -N
+%autosetup -n %{name}-%{version} -N

 %patch 1 -p1 -b .backup
 %patch 2 -p1 -b .backup
@ -188,17 +183,17 @@ mkdir -p build-doc
 # Tests the API of the library
 %if %{with test_api}
 %define _vpath_builddir build
-%ctest -E 'sam_file_seek_test'
+%ctest
 %endif
 # Tests that every header includes all required headers and detects linkage issues
 %if %{with test_header}
 %define _vpath_builddir build-header
-%ctest -E 'sam_file_seek_test'
+%ctest
 %endif
 # Microbenchmarks
 %if %{with benchmark}
 %define _vpath_builddir build-performance
-%ctest -E 'sam_file_seek_test'
+%ctest
 %endif
 %endif

@ -217,118 +212,4 @@ mkdir -p build-doc
 %endif

 %changelog
-* Wed Feb 05 2025 Antonio Trande <sagitter@fedoraproject.org> - 3.4.0-0.5.rc3
- Pre-release 3.4.0 RC3
-
-* Mon Jan 20 2025 Antonio Trande <sagitter@fedoraproject.org> - 3.4.0-0.4.rc2
- Pre-release 3.4.0 RC2
- Disable zlib (upstream issue #3323)
-
-* Sun Jan 19 2025 Fedora Release Engineering <releng@fedoraproject.org> - 3.4.0-0.3.rc1
- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild
-
-* Sat Jul 20 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.4.0-0.2.rc1
- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild
-
-* Tue Jan 30 2024 Jerry James <loganjerry@gmail.com> - 3.4.0-0.1.rc1
- Pre-release 3.4.0 RC1
- Remove unused dependency on coin-or-lemon
- Convert License field to SPDX
- Note that the devel package bundles zipstream and bzip2stream
- Note that the devel package needs zlib-devel and bzip2-devel
-
-* Sat Jan 27 2024 Fedora Release Engineering <releng@fedoraproject.org> - 3.3.0-0.7.rc2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild
-
-* Thu Aug 10 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.3.0-0.6.rc2
- Pre-release 3.3.0 RC2
-
-* Tue Jul 18 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.3.0-0.5.rc1
- Pre-release 3.3.0 RC1
-
-* Thu Apr 06 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.3.0-0.4.20230403git8c604d98
- Pre-release 3.3.0 commit #8c604d98
-
-* Thu Mar 30 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.3.0-0.3.20230330git174255ee
- Pre-release 3.3.0 commit #174255ee
- Disable tests
- Disable benchmarks
-
-* Sat Mar 25 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.3.0-0.2.20230119gitc5ec15bd
- Pre-release 3.3.0 commit #c5ec15bd
-
-* Tue Jan 24 2023 Antonio Trande <sagitter@fedoraproject.org> - 3.3.0-0.1.20230119git404affbf
- Pre-release 3.3.0 commit #404affbf
-
-* Sat Jan 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 3.2.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
-
-* Sat Jul 23 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.2.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
-
-* Sun Jun 26 2022 Antonio Trande <sagitter@fedoraproject.org> - 3.2.0-1
- Release 3.2.0
-
-* Wed Jun 15 2022 Antonio Trande <sagitter@fedoraproject.org> - 3.2.0-0.1.rc1.20220615git1148ce10
- Pre-release 3.2.0
- Enable tests
-
-* Sat Feb 05 2022 Fedora Release Engineering <releng@fedoraproject.org> - 3.1.0-3
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
- Patched for GCC-12
-
-* Mon Jan 17 2022 Kevin Fenzi <kevin@scrye.com> - 3.1.0-2
- Rebuild for hiredis 1.0.2
-
-* Fri Nov 26 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.1.0-1
- Release 3.1.0
-
-* Sun Sep 05 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.1.0-0.2.20210809git4604f1b2
- Rebuild for gtest-1.11.0
-
-* Mon Aug 09 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.1.0-0.1.20210809git4604f1b2
- Pre-release 3.1.0
-
-* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 3.0.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
-
-* Fri May 28 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.0.3-1
- Release 3.0.3
-
-* Wed May 26 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.0.3-0.1.rc1
- Pre-release 3.0.3-rc1
-
-* Sun Feb 14 2021 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-7
- Disable tests with GCC-11 (rhbz#1923593)
- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild
-
-* Fri Dec 11 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-6
- Rebuild for GCC-11
-
-* Tue Nov 03 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-5
- Bundle sdsl header files
-
-* Sat Oct 17 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-4
- Remove old License file from bundled libraries
- Redefine vpath builddir
-
-* Fri Oct 16 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-3
- Fix Requires packages
-
-* Wed Oct 14 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-2
- Use -std=c++2a flag
- Patched for upstream bugs #2209 #2210
-
-* Tue Oct 13 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-1
- Release 3.0.2
-
-* Fri Aug 07 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-0.2.20200806gitbf04354
- Pre-release 3.0.2 with bundled range-v3
-
-* Thu Aug 06 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.2-0.1.20200806gitbf04354
- Pre-release 3.0.2
-
-* Thu Mar 05 2020 Antonio Trande <sagitter@fedoraproject.org> - 3.0.1-1
- Execute header/performance tests
- Build docs
- First package
+%autochangelog
--- a/2
+++ b/2
@ -1 +1 @@
-SHA512 (seqan3-3.4.0-rc.3.tar.gz) = e135873d0c2b1fba92f27ab8efa3a692b5a9f52272c9523eff86bd160142f6fa6cdcee85c04274f2f804a19044114f6bb51703bb01fa1d25a8088a0050645d83
+SHA512 (seqan3-3.4.2.tar.gz) = 6337bb3d49406e89e277ab4b9e751f6b2a0524c32c7aecf2093b795863870c2337bb1df1c798791aee82325cb3f0b19ecb57e109d73db847e6fe6a2a033bbaae
Author	SHA1	Message	Date
Fedora Release Engineering	77bbc590f1	Rebuilt for https://fedoraproject.org/wiki/Fedora_45_Mass_Rebuild	2026-07-17 06:24:20 +00:00
Antonio Trande	8b2ed55118	Release 3.4.2	2026-03-22 14:45:04 +01:00
Antonio Trande	9b4f52ac01	Release 3.4.0	2026-01-29 17:38:32 +01:00
Fedora Release Engineering	1870e689e7	Rebuilt for https://fedoraproject.org/wiki/Fedora_44_Mass_Rebuild	2026-01-17 17:53:55 +00:00
Cristian Le	9668b05564	Allow to build with CMake 4.0 (rhbz#2380806)	2025-11-12 18:28:03 +01:00
Fedora Release Engineering	1a83dc7de4	Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild	2025-07-25 18:09:17 +00:00
Antonio Trande	28f80a711a	Fix GCC-15 false warnings\| Fix rhbz#2381124	2025-07-20 17:37:20 +02:00