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6 commits
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Author SHA1 Message Date
Benjamin A. Beasley
d48c32fbfa Fix mis-named “chanegelog” in repo 
Merge it with the output of “rpmautospec generate-changelog”, using the
generated changelogs only after the “chanegelog” file ends.
 2023-12-24 11:20:05 -05:00
Packit
a8086019c7 [packit] 7.32.4 upstream release 
Upstream tag: v7.32.4
Upstream commit: 0998cc57
 2023-09-18 19:59:39 -04:00
Benjamin A. Beasley
1dac92e0ca Update to 7.32.3 2023-08-10 12:13:37 -04:00
Packit
2d7f40f6e2 [packit] 7.32.2 upstream release 
Upstream tag: v7.32.2
Upstream commit: 1c5d1547

If you need to do any change in this pull request, you need to locally fetch the source branch of it and push it (with a fix) to your fork (as it is not possible to push to the branch created in the Packit’s fork):
```
git fetch https://src.fedoraproject.org/forks/packit/rpms/snakemake.git refs/heads/*:refs/remotes/packit/*
git checkout packit/7.32.2-rawhide-update-pull_from_upstream
```
 2023-08-10 12:13:34 -04:00
Benjamin A. Beasley
3541a5fc2f Update to 7.32.0 (close RHBZ#2229001) 2023-08-04 11:22:26 -04:00
Benjamin A. Beasley
495818048a Update to 7.31.1 (close RHBZ#2224675) 2023-08-02 15:24:51 -04:00
6 changed files with 204 additions and 36 deletions
Download patch file Download diff file Expand all files Collapse all files

5
.gitignore vendored
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@ -24,3 +24,8 @@
/snakemake-7.25.3.tar.gz
/snakemake-7.26.0.tar.gz
/snakemake-7.30.1.tar.gz
/snakemake-7.31.1.tar.gz
/snakemake-7.32.0.tar.gz
/snakemake-7.32.2.tar.gz
/snakemake-7.32.3.tar.gz
/snakemake-7.32.4.tar.gz

3
README.packit Normal file
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@ -0,0 +1,3 @@
This repository is maintained by packit.
https://packit.dev/
The file was generated using packit 0.80.0.post8+gf2b5fcbc.

32
chanegelog
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@ -1,32 +0,0 @@
* Mon Jan 24 2022 Vanessa Christopher <vanessaigwe1@gmail.com> - 6.13.1-2
- autorelease
* Sun Jan 23 2022 Vanessa Christopher <vanessaigwe1@gmail.com> - 6.13.1-1
- Version update to v6.13.1
* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 6.12.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sat Dec 18 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.12.3-1
- Version update to v6.12.3
- Use pyproject macros
* Thu Sep 09 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.8.0-1
- Version update to v6.8.0
* Tue Aug 17 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.7.0-1
- Version update to v6.7.0
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 6.6.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Sat Jul 17 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.6.0-1
- Version update to v6.6.0
- Remove patches for documentation as they are no longer needed
* Mon Jul 05 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.5.2-2
- Correct the import path of napoleon extension
- Use pytest macro
* Sat Jul 03 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.5.2-1
- Initial build

179
changelog Normal file
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@ -0,0 +1,179 @@
* Fri Dec 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.32.4-2
- Fix mis-named “chanegelog” in repo
* Mon Sep 18 2023 Packit <hello@packit.dev> - 7.32.4-1
- [packit] 7.32.4 upstream release
* Thu Aug 10 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.32.3-1
- Update to 7.32.3
* Thu Aug 10 2023 Packit <hello@packit.dev> - 7.32.2-1
- [packit] 7.32.2 upstream release
* Thu Aug 10 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 7.32.0-8
- chore(packit): re-add upstream_tag_template
* Thu Aug 10 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 7.32.0-7
- chore(packit): add koji job
* Thu Aug 10 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 7.32.0-6
- chore(packit): limit PRs to rawhide
* Wed Aug 09 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 7.32.0-5
- Revert "chore(packit): define upstream tag template"
* Wed Aug 09 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 7.32.0-4
- chore(packit): define upstream tag template
* Sat Aug 05 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.32.0-3
- Don’t allow packit to report issues upstream
* Fri Aug 04 2023 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 7.32.0-2
- chore: add packit conf
* Fri Aug 04 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.32.0-1
- Update to 7.32.0 (close RHBZ#2229001)
* Wed Aug 02 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.31.1-1
- Update to 7.31.1 (close RHBZ#2224675)
* Sat Jul 22 2023 Fedora Release Engineering <releng@fedoraproject.org> - 7.30.1-4
- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild
* Mon Jul 17 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.30.1-3
- Fix FTBFS due to SyntaxWarnings in Python 3.12 (fix RHBZ#2220595)
* Thu Jul 13 2023 Python Maint <python-maint@redhat.com> - 7.30.1-2
- Rebuilt for Python 3.12
* Thu Jun 29 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.30.1-1
- Update to 7.30.1 (close RHBZ#2214110)
- Adds a metapackage for the new “azure” extra
* Thu Jun 29 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.26.0-6
- Use new (rpm 4.17.1+) bcond style
* Mon May 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.26.0-5
- Install nano syntax highlighting support
* Mon May 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.26.0-4
- Install vim syntax highlighting support
* Mon May 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.26.0-3
- Install bash completions
* Mon May 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.26.0-2
- Add a generated man page
* Mon May 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.26.0-1
- Update to 7.26.0 (close RHBZ#2203471)
* Sat May 06 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.25.3-1
- Update to 7.25.3 (close RHBZ#2193279J)
* Sat Apr 29 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.25.2-1
- Update to 7.25.2 (close RHBZ#2178275)
* Sat Mar 11 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.24.1-1
- Update to 7.24.1 (close RHBZ#2171148)
* Mon Feb 13 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.22.0-1
- Update to 7.22.0 (close RHBZ#2169240)
* Wed Feb 08 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.21.0-1
- Update to 7.21.0 (close RHBZ#2166983)
* Sun Jan 22 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.20.0-1
- Update to 7.20.0 (close RHBZ#2162603)
* Sat Jan 21 2023 Fedora Release Engineering <releng@fedoraproject.org> - 7.19.1-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild
* Wed Jan 04 2023 Benjamin A. Beasley <code@musicinmybrain.net> - 7.19.1-1
- Update to 7.19.1 (close RHBZ#2153168)
* Fri Dec 09 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.18.2-1
- Update to 7.8.12 (close RHBZ#2139921)
* Thu Dec 08 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.18.1-1
- Update to 7.18.1
* Tue Nov 01 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.18.0-1
- Update to 7.18.0 (close RHBZ#2138985)
* Tue Nov 01 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.17.2-4
- Remove an obsolete spec file comment
* Tue Nov 01 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.17.2-3
- Confirm the License is SPDX MIT
* Tue Nov 01 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.17.2-2
- Simplify references to the -doc subpackage
* Sun Oct 30 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.17.2-1
- Update to 7.17.2 (close RHBZ#2130414)
* Fri Aug 26 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.13.0-1
- Update to 7.13.0 (close RHBZ#2121550)
* Mon Aug 22 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.12.1-2
- Use rsvg-convert instead of inkscape
* Thu Aug 11 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.12.1-1
- Update to 7.12.1 (close RHBZ#2117565)
* Sun Jul 31 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.12.0-1
- Update to 7.12.0
* Wed Jul 27 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.11.0-1
- Update to 7.11.0
* Sun Jul 24 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.9.0-2
- Build documentation as PDF instead of HTML
* Sun Jul 24 2022 Benjamin A. Beasley <code@musicinmybrain.net> - 7.9.0-1
- Update to 7.9.0 (close RHBZ#2039280, fix RHBZ#2099173)
- Add “extras” metapackages
- Generate BuildRequires for documentation
* Sat Jul 23 2022 Fedora Release Engineering <releng@fedoraproject.org> - 6.13.1-5
- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild
* Thu Jun 16 2022 Python Maint <python-maint@redhat.com> - 6.13.1-4
- Rebuilt for Python 3.11
* Mon Jan 24 2022 Vanessa_kris <vanessaigwe1@gmail.com> - 6.13.1-3
- added autochanelog
* Mon Jan 24 2022 Vanessa Christopher <vanessaigwe1@gmail.com> - 6.13.1-2
- autorelease
* Sun Jan 23 2022 Vanessa Christopher <vanessaigwe1@gmail.com> - 6.13.1-1
- Version update to v6.13.1
* Sat Jan 22 2022 Fedora Release Engineering <releng@fedoraproject.org> - 6.12.3-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild
* Sat Dec 18 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.12.3-1
- Version update to v6.12.3
- Use pyproject macros
* Thu Sep 09 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.8.0-1
- Version update to v6.8.0
* Tue Aug 17 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.7.0-1
- Version update to v6.7.0
* Fri Jul 23 2021 Fedora Release Engineering <releng@fedoraproject.org> - 6.6.0-2
- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild
* Sat Jul 17 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.6.0-1
- Version update to v6.6.0
- Remove patches for documentation as they are no longer needed
* Mon Jul 05 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.5.2-2
- Correct the import path of napoleon extension
- Use pytest macro
* Sat Jul 03 2021 Aniket Pradhan <major AT fedoraproject DOT org> - 6.5.2-1
- Initial build

19
snakemake.spec
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@ -12,7 +12,7 @@ Finally, Snakemake workflows can entail a description of required software,
which will be automatically deployed to any execution environment.}
Name: snakemake
Version: 7.30.1
Version: 7.32.4
Release: %autorelease
Summary: Workflow management system to create reproducible and scalable data analyses
@ -167,8 +167,21 @@ k="${k-}${k+ and }not test_tes"
# Require a running slurm instance; maybe this is possible to set up
# temporarily in the offline build environment, but we don’t know how.
k="${k-}${k+ and }not test_slurm_"
# tests/test_google_lifesciences.py needs a network connection (and GCP credentials)
%pytest -v -k "${k-}" --ignore tests/test_google_lifesciences.py
# Needs a network connection (and GCP credentials):
ignore="${ignore-} --ignore=tests/test_google_lifesciences.py"
# ______ ERROR collecting tests/test_conda_python_script/test_script.py ______
# import file mismatch:
# imported module 'test_script' has this __file__ attribute:
# /builddir/build/BUILD/snakemake-7.31.1/tests/test_conda_python_3_7_script/test_script.py
# which is not the same as the test file we want to collect:
# /builddir/build/BUILD/snakemake-7.31.1/tests/test_conda_python_script/test_script.py
# HINT: remove __pycache__ / .pyc files and/or use a unique basename for your test file modules
#
# Plus, this would add an unwanted BuildRequires on %%{py3_dist Pillow}.
ignore="${ignore-} --ignore-glob=tests/test_conda_python_3_7_script/*"
%pytest -v -k "${k-}" ${ignore-}
%endif
%files -f %{pyproject_files}

2
sources
View file

@ -1 +1 @@
SHA512 (snakemake-7.30.1.tar.gz) = 9ffd72d66a4ee91a50d91d28397400112fa195375567cdd8959c5e790c06923c99a7bc036e1e30efcbae3d8d586ef5f3821e18ec01e56497b217899ef7952bc7
SHA512 (snakemake-7.32.4.tar.gz) = 34fef61528b18facab798652c88ed5c698ef02161e023255fdd024b7c7781c4e582cdb04b2740fdff9b6f3600acaec719742984acee57920bb48ef3b5af99d9a