diff --git a/.gitignore b/.gitignore index 7c0a8bc..61d265c 100644 --- a/.gitignore +++ b/.gitignore @@ -3,3 +3,4 @@ /vcftools-0.1.14.tar.gz /vcftools-0.1.15.tar.gz /vcftools-0.1.16.tar.gz +/vcftools-0.1.17.tar.gz diff --git a/changelog b/changelog new file mode 100644 index 0000000..0f37f6f --- /dev/null +++ b/changelog @@ -0,0 +1,156 @@ +* Fri Jul 25 2025 Fedora Release Engineering - 0.1.16-22 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild + +* Sun Jan 19 2025 Fedora Release Engineering - 0.1.16-21 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild + +* Mon Jul 29 2024 Miroslav Suchý - 0.1.16-20 +- convert license to SPDX + +* Sat Jul 20 2024 Fedora Release Engineering - 0.1.16-19 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild + +* Sat Jan 27 2024 Fedora Release Engineering - 0.1.16-18 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild + +* Sat Jul 22 2023 Fedora Release Engineering - 0.1.16-17 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild + +* Sat Jan 21 2023 Fedora Release Engineering - 0.1.16-16 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild + +* Thu Sep 01 2022 Filipe Rosset - 0.1.16-15 +- spec cleanup and modernization + +* Sat Jul 23 2022 Fedora Release Engineering - 0.1.16-14 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild + +* Mon May 30 2022 Jitka Plesnikova - 0.1.16-13 +- Perl 5.36 rebuild + +* Sat Jan 22 2022 Fedora Release Engineering - 0.1.16-12 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild + +* Fri Jul 23 2021 Fedora Release Engineering - 0.1.16-11 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild + +* Fri May 21 2021 Jitka Plesnikova - 0.1.16-10 +- Perl 5.34 rebuild + +* Wed Jan 27 2021 Fedora Release Engineering - 0.1.16-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild + +* Wed Jul 29 2020 Fedora Release Engineering - 0.1.16-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Fri Jun 26 2020 Jitka Plesnikova - 0.1.16-7 +- Perl 5.32 re-rebuild of bootstrapped packages + +* Mon Jun 22 2020 Jitka Plesnikova - 0.1.16-6 +- Perl 5.32 rebuild + +* Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + +* Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild + +* Mon Jun 17 2019 Petr Pisar - 0.1.16-3 +- Install Perl modules into a vendor Perl path + +* Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + +* Sun Aug 05 2018 Adam Huffman - 0.1.16-1 +- Update to latest upstream release 0.1.16 + +* Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + +* Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 +- added gcc-c++ as BR + +* Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + +* Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild + +* Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 +- Update to latest upstream release 0.1.15 + +* Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild + +* Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 +- Update to latest upstream release 0.1.14 +- Fix FTBFS rhbz #1308219 +- Fix rhbz #1365319 thanks to Aram Minasyan +- Spec modernization/clean up, new URLs from GitHub + +* Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + +* Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + +* Sat May 02 2015 Kalev Lember - 0.1.11-7 +- Rebuilt for GCC 5 C++11 ABI change + +* Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + +* Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild + +* Sat Aug 03 2013 Petr Pisar - 0.1.11-4 +- Perl 5.18 rebuild + +* Tue Jul 30 2013 Peter Robinson 0.1.11-3 +- Use distro CFLAGS (fix FTBFS on ARM) + +* Thu Jul 18 2013 Petr Pisar - 0.1.11-2 +- Perl 5.18 rebuild + +* Wed Jul 03 2013 - 0.1.11-1 +- Update to latest upstream release 0.1.11 + +* Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild + +* Sun Jul 29 2012 - 0.1.9-1 +- Update to 0.1.9 +- Remove perl patch that's no longer needed + +* Thu Jan 5 2012 Adam Huffman - 0.1.7-1 +- update to upstream release 0.1.7 +- remove fill-rsIDs +- update Perl makefile patch + +* Sun Jul 31 2011 Adam Huffman - 0.1.6-1 +- update to 0.1.6 + +* Tue May 3 2011 Adam Huffman - 0.1.5-2 +- minor fix to Jack's Perl patch +- permissions fix +- hardcoded path fix +- cleaner Makefile fix + +* Sun May 1 2011 Jack Tanner - 0.1.5-1 +- bump to 0.1.5 +- rename compare-vcf, merge-vcf, and query-vcf to vcf-compare, + vcf-merge, and vcf-query +- add VcfStats.pm to perl export +- patch perl/Makefile to export VcfStats.pm + +* Mon Mar 21 2011 Adam Huffman - 0.1.4a-1 +- initial version +- fix CPPFLAGS +- fix hardcoded installation location + diff --git a/sources b/sources index 1088c67..6131466 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (vcftools-0.1.16.tar.gz) = c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6 +SHA512 (vcftools-0.1.17.tar.gz) = 8adf2490b5d0886302f8f19efc735e4b96d657d70a764b6fa397acdf6f83b54da29dc73e9b96b275a793a511996c415630255610249e6eb5441bc783e82853d9 diff --git a/vcftools.spec b/vcftools.spec index 8fbfbdb..ab1d67f 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,17 +1,16 @@ Name: vcftools -Version: 0.1.16 -Release: 5%{?dist} +Version: 0.1.17 +Release: %autorelease Summary: VCF file manipulation tools - -License: GPLv3 +# Automatically converted from old format: GPLv3 - review is highly recommended. +License: GPL-3.0-only URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz +BuildRequires: make BuildRequires: gcc-c++ BuildRequires: perl-generators BuildRequires: perl-interpreter BuildRequires: zlib-devel -Requires: perl(:MODULE_COMPAT_%(eval "`perl -V:version`"; echo $version)) - %description A program package designed for working with VCF files, such as those @@ -20,7 +19,7 @@ provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. %prep -%setup -q -n %{name}-%{version} +%autosetup %build %configure --with-pmdir=%(perl -e 'print $ARGV[0] =~ s{\A\Q$ARGV[1]\E/}{}r' \ @@ -31,7 +30,7 @@ comparing and calculate some basic population genetic statistics. make check %install -make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' +%make_install %files @@ -69,108 +68,4 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog -* Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild - -* Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Mon Jun 17 2019 Petr Pisar - 0.1.16-3 -- Install Perl modules into a vendor Perl path - -* Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Sun Aug 05 2018 Adam Huffman - 0.1.16-1 -- Update to latest upstream release 0.1.16 - -* Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 -- added gcc-c++ as BR - -* Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild - -* Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild - -* Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 -- Update to latest upstream release 0.1.15 - -* Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild - -* Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 -- Update to latest upstream release 0.1.14 -- Fix FTBFS rhbz #1308219 -- Fix rhbz #1365319 thanks to Aram Minasyan -- Spec modernization/clean up, new URLs from GitHub - -* Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Sat May 02 2015 Kalev Lember - 0.1.11-7 -- Rebuilt for GCC 5 C++11 ABI change - -* Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild - -* Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Sat Aug 03 2013 Petr Pisar - 0.1.11-4 -- Perl 5.18 rebuild - -* Tue Jul 30 2013 Peter Robinson 0.1.11-3 -- Use distro CFLAGS (fix FTBFS on ARM) - -* Thu Jul 18 2013 Petr Pisar - 0.1.11-2 -- Perl 5.18 rebuild - -* Wed Jul 03 2013 - 0.1.11-1 -- Update to latest upstream release 0.1.11 - -* Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild - -* Sun Jul 29 2012 - 0.1.9-1 -- Update to 0.1.9 -- Remove perl patch that's no longer needed - -* Thu Jan 5 2012 Adam Huffman - 0.1.7-1 -- update to upstream release 0.1.7 -- remove fill-rsIDs -- update Perl makefile patch - -* Sun Jul 31 2011 Adam Huffman - 0.1.6-1 -- update to 0.1.6 - -* Tue May 3 2011 Adam Huffman - 0.1.5-2 -- minor fix to Jack's Perl patch -- permissions fix -- hardcoded path fix -- cleaner Makefile fix - -* Sun May 1 2011 Jack Tanner - 0.1.5-1 -- bump to 0.1.5 -- rename compare-vcf, merge-vcf, and query-vcf to vcf-compare, - vcf-merge, and vcf-query -- add VcfStats.pm to perl export -- patch perl/Makefile to export VcfStats.pm - -* Mon Mar 21 2011 Adam Huffman - 0.1.4a-1 -- initial version -- fix CPPFLAGS -- fix hardcoded installation location - +%autochangelog