From 495cb7dbe659248fa88ecdbb8313fb36f59b78ef Mon Sep 17 00:00:00 2001 From: Dennis Gilmore Date: Thu, 14 Feb 2013 20:39:32 -0600 Subject: [PATCH 01/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 14cef98..ff0e3e2 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.9 -Release: 1%{?dist} +Release: 2%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -63,6 +63,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild + * Sun Jul 29 2012 - 0.1.9-1 - Update to 0.1.9 - Remove perl patch that's no longer needed From 699a14382c718ba6c7c819a3cd99587cea19978d Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 3 Jul 2013 08:04:45 +0100 Subject: [PATCH 02/50] Update to latest upstream release 0.1.11 --- .gitignore | 1 + sources | 2 +- vcftools.spec | 7 +++++-- 3 files changed, 7 insertions(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index 990fecb..6ccae35 100644 --- a/.gitignore +++ b/.gitignore @@ -1 +1,2 @@ /vcftools_0.1.9.tar.gz +/vcftools_0.1.11.tar.gz diff --git a/sources b/sources index 6a6198a..e8d3711 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -57f3b8d7ecb26a12559595851607f023 vcftools_0.1.9.tar.gz +ddb49e9fa2bfedae36b4dce163adfaa8 vcftools_0.1.11.tar.gz diff --git a/vcftools.spec b/vcftools.spec index ff0e3e2..fc8d6e5 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools -Version: 0.1.9 -Release: 2%{?dist} +Version: 0.1.11 +Release: 1%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -63,6 +63,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Wed Jul 03 2013 - 0.1.11-1 +- Update to latest upstream release 0.1.11 + * Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild From d48873717ee2ec16ef10687848cd4490285cf6ef Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 3 Jul 2013 08:23:21 +0100 Subject: [PATCH 03/50] Add new binaries --- vcftools.spec | 9 +++++++++ 1 file changed, 9 insertions(+) diff --git a/vcftools.spec b/vcftools.spec index fc8d6e5..b04af2d 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -57,6 +57,15 @@ rm -rf %{buildroot} %{_bindir}/vcf-subset %{_bindir}/vcf-to-tab %{_bindir}/vcf-validator +%{_bindir}/fill-fs +%{_bindir}/fill-ref-md5 +%{_bindir}/vcf-consensus +%{_bindir}/vcf-contrast +%{_bindir}/vcf-fix-ploidy +%{_bindir}/vcf-indel-stats +%{_bindir}/vcf-phased-join +%{_bindir}/vcf-shuffle-cols +%{_bindir}/vcf-tstv %attr(0755, root, root) %{_bindir}/vcftools %{perl_vendorarch}/FaSlice.pm %{perl_vendorarch}/Vcf.pm From 978edf7b158d48d0a36e8de0b6b70687dde248ae Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Petr=20P=C3=ADsa=C5=99?= Date: Thu, 18 Jul 2013 02:00:30 +0200 Subject: [PATCH 04/50] Perl 5.18 rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index b04af2d..e961d97 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 1%{?dist} +Release: 2%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -72,6 +72,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Thu Jul 18 2013 Petr Pisar - 0.1.11-2 +- Perl 5.18 rebuild + * Wed Jul 03 2013 - 0.1.11-1 - Update to latest upstream release 0.1.11 From 89b70a9339afc344112484a24e617589fd648e0c Mon Sep 17 00:00:00 2001 From: Peter Robinson Date: Tue, 30 Jul 2013 14:16:42 +0100 Subject: [PATCH 05/50] Use distro CFLAGS (fix FTBFS on ARM) --- vcftools.spec | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/vcftools.spec b/vcftools.spec index e961d97..5c66076 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 2%{?dist} +Release: 3%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -21,10 +21,9 @@ comparing and calculate some basic population genetic statistics. %prep %setup -q -n %{name}_%{version} -#%patch0 -p1 %build -make %{?_smp_mflags} CPPFLAGS="%{optflags}" +make %{?_smp_mflags} CPPFLAGS="%{optflags}" CFLAGS="%{optflags}" %install @@ -72,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Tue Jul 30 2013 Peter Robinson 0.1.11-3 +- Use distro CFLAGS (fix FTBFS on ARM) + * Thu Jul 18 2013 Petr Pisar - 0.1.11-2 - Perl 5.18 rebuild From 14d4fc8abd6055ee31a36a7faff2c268f1c34bdc Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Petr=20P=C3=ADsa=C5=99?= Date: Sat, 3 Aug 2013 14:35:03 +0200 Subject: [PATCH 06/50] Perl 5.18 rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 5c66076..657de51 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 3%{?dist} +Release: 4%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -71,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Sat Aug 03 2013 Petr Pisar - 0.1.11-4 +- Perl 5.18 rebuild + * Tue Jul 30 2013 Peter Robinson 0.1.11-3 - Use distro CFLAGS (fix FTBFS on ARM) From 0a132b6f6a4dbd8bda0a02bea4d70a0f54707cbe Mon Sep 17 00:00:00 2001 From: Dennis Gilmore Date: Sat, 7 Jun 2014 22:20:20 -0500 Subject: [PATCH 07/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 657de51..43fc666 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 4%{?dist} +Release: 5%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -71,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild + * Sat Aug 03 2013 Petr Pisar - 0.1.11-4 - Perl 5.18 rebuild From 94dc080ceb5404807dc80d24779b93ade3b7b786 Mon Sep 17 00:00:00 2001 From: Peter Robinson Date: Mon, 18 Aug 2014 07:34:28 +0000 Subject: [PATCH 08/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 43fc666..f0eca97 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 5%{?dist} +Release: 6%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -71,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + * Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild From 781f45dfff03cf27222230df07bcbde2447a3a67 Mon Sep 17 00:00:00 2001 From: Kalev Lember Date: Sat, 2 May 2015 18:24:37 +0200 Subject: [PATCH 09/50] Rebuilt for GCC 5 C++11 ABI change --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index f0eca97..f14675e 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 6%{?dist} +Release: 7%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -71,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Sat May 02 2015 Kalev Lember - 0.1.11-7 +- Rebuilt for GCC 5 C++11 ABI change + * Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild From 4ec4f5c84d33c73a722a5e31afdc2bb65a93498b Mon Sep 17 00:00:00 2001 From: Dennis Gilmore Date: Fri, 19 Jun 2015 01:51:03 +0000 Subject: [PATCH 10/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index f14675e..0ecb037 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 7%{?dist} +Release: 8%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -71,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + * Sat May 02 2015 Kalev Lember - 0.1.11-7 - Rebuilt for GCC 5 C++11 ABI change From 309e1a92dd91d3b4c7fd65366873d49de341d687 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Fri, 5 Feb 2016 02:34:29 +0000 Subject: [PATCH 11/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 0ecb037..c4dfbb8 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.11 -Release: 8%{?dist} +Release: 9%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -71,6 +71,9 @@ rm -rf %{buildroot} %{perl_vendorarch}/VcfStats.pm %changelog +* Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + * Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild From 220a21ea73cc712bcc1ea6f3847b6871a928ecd2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Petr=20P=C3=ADsa=C5=99?= Date: Fri, 24 Jun 2016 10:00:31 +0200 Subject: [PATCH 12/50] Mandatory Perl build-requires added --- vcftools.spec | 1 + 1 file changed, 1 insertion(+) diff --git a/vcftools.spec b/vcftools.spec index c4dfbb8..08ceb02 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -10,6 +10,7 @@ Source0: http://downloads.sourceforge.net/%{name}/%{name}_%{version}.tar.gz BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) +BuildRequires: perl-generators BuildRequires: zlib-devel From d81de4084c0418ca369aa315bbc055ea65465f78 Mon Sep 17 00:00:00 2001 From: Filipe Rosset Date: Tue, 8 Nov 2016 14:16:36 -0200 Subject: [PATCH 13/50] - Update to latest upstream release 0.1.14 - Fix FTBFS rhbz #1308219 - Fix rhbz #1365319 thanks to Aram Minasyan - Spec modernization/clean up, new URLs from GitHub --- .gitignore | 1 + sources | 2 +- vcftools.spec | 45 ++++++++++++++++++++++----------------------- 3 files changed, 24 insertions(+), 24 deletions(-) diff --git a/.gitignore b/.gitignore index 6ccae35..e5fc789 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,3 @@ /vcftools_0.1.9.tar.gz /vcftools_0.1.11.tar.gz +/vcftools-0.1.14.tar.gz diff --git a/sources b/sources index e8d3711..6c0707c 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -ddb49e9fa2bfedae36b4dce163adfaa8 vcftools_0.1.11.tar.gz +a110662535651caa6cc8c876216a9f77 vcftools-0.1.14.tar.gz diff --git a/vcftools.spec b/vcftools.spec index 08ceb02..5e79c5f 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,15 +1,12 @@ Name: vcftools -Version: 0.1.11 -Release: 9%{?dist} +Version: 0.1.14 +Release: 1%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering License: GPLv3 -URL: http://vcftools.sourceforge.net/ -Source0: http://downloads.sourceforge.net/%{name}/%{name}_%{version}.tar.gz - -BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) - +URL: https://vcftools.github.io/ +Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz BuildRequires: perl-generators BuildRequires: zlib-devel @@ -21,27 +18,21 @@ provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. %prep -%setup -q -n %{name}_%{version} +%setup -q -n %{name}-%{version} %build +%configure make %{?_smp_mflags} CPPFLAGS="%{optflags}" CFLAGS="%{optflags}" +%check +make check %install -rm -rf %{buildroot} -make install PREFIX=%{buildroot}/usr MODDIR="%{buildroot}/%{perl_vendorarch}" \ -BINDIR="%{buildroot}/%{_bindir}" - -install -m 0775 %{_builddir}/%{name}_%{version}/cpp/vcftools %{buildroot}/%{_bindir} - - -%clean -rm -rf %{buildroot} +make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %files -%defattr(-,root,root,-) -%doc README.txt +%doc LICENSE README.md %{_bindir}/vcf-compare %{_bindir}/fill-aa %{_bindir}/fill-an-ac @@ -66,12 +57,20 @@ rm -rf %{buildroot} %{_bindir}/vcf-phased-join %{_bindir}/vcf-shuffle-cols %{_bindir}/vcf-tstv -%attr(0755, root, root) %{_bindir}/vcftools -%{perl_vendorarch}/FaSlice.pm -%{perl_vendorarch}/Vcf.pm -%{perl_vendorarch}/VcfStats.pm +%{_bindir}/vcf-fix-newlines +%{_bindir}/vcftools +%{_datadir}/perl5/FaSlice.pm +%{_datadir}/perl5/Vcf.pm +%{_datadir}/perl5/VcfStats.pm +%{_mandir}/man1/vcftools.1.gz %changelog +* Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 +- Update to latest upstream release 0.1.14 +- Fix FTBFS rhbz #1308219 +- Fix rhbz #1365319 thanks to Aram Minasyan +- Spec modernization/clean up, new URLs from GitHub + * Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild From 02be6d980648f4f223eebd1e8b1aeda4356bbc7a Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 11 Feb 2017 16:57:32 +0000 Subject: [PATCH 14/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 5e79c5f..7f9a3e1 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.14 -Release: 1%{?dist} +Release: 2%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -65,6 +65,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild + * Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 - Update to latest upstream release 0.1.14 - Fix FTBFS rhbz #1308219 From 8441c3a1d4207dd49723a94fb4240ce315e3656d Mon Sep 17 00:00:00 2001 From: Filipe Rosset Date: Fri, 21 Apr 2017 00:18:22 -0300 Subject: [PATCH 15/50] - Update to latest upstream release 0.1.15 --- .gitignore | 1 + sources | 2 +- vcftools.spec | 7 +++++-- 3 files changed, 7 insertions(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index e5fc789..f031237 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ /vcftools_0.1.9.tar.gz /vcftools_0.1.11.tar.gz /vcftools-0.1.14.tar.gz +/vcftools-0.1.15.tar.gz diff --git a/sources b/sources index 6c0707c..74d30ef 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -a110662535651caa6cc8c876216a9f77 vcftools-0.1.14.tar.gz +SHA512 (vcftools-0.1.15.tar.gz) = 9ef5688202b263139c7e6f3ff0d6f2565f08bc7b5a67dba7b5f6845791b34ae23515e65b2b294502fe8a8343d061612fa9c5f11742323cd70c2f8409609e0366 diff --git a/vcftools.spec b/vcftools.spec index 7f9a3e1..7b89cdd 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools -Version: 0.1.14 -Release: 2%{?dist} +Version: 0.1.15 +Release: 1%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -65,6 +65,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 +- Update to latest upstream release 0.1.15 + * Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild From a45f8007ed82b517a3a0a196b3d68cdbc3da83de Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Mon, 15 May 2017 20:38:34 +0000 Subject: [PATCH 16/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 7b89cdd..b557744 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.15 -Release: 1%{?dist} +Release: 2%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -65,6 +65,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild + * Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 - Update to latest upstream release 0.1.15 From 3b1ceaf86f9546aaad7c06182e077beb8451184a Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Thu, 27 Jul 2017 21:11:59 +0000 Subject: [PATCH 17/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index b557744..e3ae277 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.15 -Release: 2%{?dist} +Release: 3%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -65,6 +65,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + * Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild From b05ccc3c48738839c5466ff8f5efc936bcbfbeea Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Thu, 3 Aug 2017 09:59:04 +0000 Subject: [PATCH 18/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index e3ae277..d89aa0f 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.15 -Release: 3%{?dist} +Release: 4%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -65,6 +65,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + * Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild From 2054be92aafe29f88ea68771d0b2e1321bdd1f14 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Fri, 9 Feb 2018 20:20:53 +0000 Subject: [PATCH 19/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index d89aa0f..e2131c8 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.15 -Release: 4%{?dist} +Release: 5%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -65,6 +65,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + * Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild From 49abc891467ad9dd67c054b45795dc1424b729de Mon Sep 17 00:00:00 2001 From: Filipe Rosset Date: Mon, 9 Apr 2018 19:53:24 -0300 Subject: [PATCH 20/50] - added gcc-c++ as BR --- vcftools.spec | 11 ++++++++--- 1 file changed, 8 insertions(+), 3 deletions(-) diff --git a/vcftools.spec b/vcftools.spec index e2131c8..80be6cc 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,12 +1,13 @@ Name: vcftools Version: 0.1.15 -Release: 5%{?dist} +Release: 6%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering License: GPLv3 URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz +BuildRequires: gcc-c++ BuildRequires: perl-generators BuildRequires: zlib-devel @@ -22,7 +23,7 @@ comparing and calculate some basic population genetic statistics. %build %configure -make %{?_smp_mflags} CPPFLAGS="%{optflags}" CFLAGS="%{optflags}" +%make_build %check make check @@ -32,7 +33,8 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %files -%doc LICENSE README.md +%doc README.md +%license LICENSE %{_bindir}/vcf-compare %{_bindir}/fill-aa %{_bindir}/fill-an-ac @@ -65,6 +67,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 +- added gcc-c++ as BR + * Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild From 88c1f22504ebe126384b9ed680705cb11081af61 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 14 Jul 2018 08:26:13 +0000 Subject: [PATCH 21/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 80be6cc..5b84b52 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.15 -Release: 6%{?dist} +Release: 7%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -67,6 +67,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + * Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 - added gcc-c++ as BR From d787458c8d5e0c34162602ed4af6e29230adf11e Mon Sep 17 00:00:00 2001 From: Adam Huffman Date: Wed, 8 Aug 2018 07:28:11 +0100 Subject: [PATCH 22/50] Update to latest upstream release 0.1.16 --- .gitignore | 1 + sources | 2 +- vcftools.spec | 7 +++++-- 3 files changed, 7 insertions(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index f031237..7c0a8bc 100644 --- a/.gitignore +++ b/.gitignore @@ -2,3 +2,4 @@ /vcftools_0.1.11.tar.gz /vcftools-0.1.14.tar.gz /vcftools-0.1.15.tar.gz +/vcftools-0.1.16.tar.gz diff --git a/sources b/sources index 74d30ef..1088c67 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (vcftools-0.1.15.tar.gz) = 9ef5688202b263139c7e6f3ff0d6f2565f08bc7b5a67dba7b5f6845791b34ae23515e65b2b294502fe8a8343d061612fa9c5f11742323cd70c2f8409609e0366 +SHA512 (vcftools-0.1.16.tar.gz) = c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6 diff --git a/vcftools.spec b/vcftools.spec index 5b84b52..561e20d 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools -Version: 0.1.15 -Release: 7%{?dist} +Version: 0.1.16 +Release: 1%{?dist} Summary: VCF file manipulation tools Group: Applications/Engineering @@ -67,6 +67,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sun Aug 05 2018 Adam Huffman - 0.1.16-1 +- Update to latest upstream release 0.1.16 + * Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild From f953e994907a8cdd8f4187b166b481850624a15a Mon Sep 17 00:00:00 2001 From: Igor Gnatenko Date: Mon, 28 Jan 2019 20:18:29 +0100 Subject: [PATCH 23/50] Remove obsolete Group tag References: https://fedoraproject.org/wiki/Changes/Remove_Group_Tag --- vcftools.spec | 1 - 1 file changed, 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 561e20d..c7df7d8 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -3,7 +3,6 @@ Version: 0.1.16 Release: 1%{?dist} Summary: VCF file manipulation tools -Group: Applications/Engineering License: GPLv3 URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz From 6e63213eb713b546c7874f6b0055ba631d87b85f Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sun, 3 Feb 2019 11:07:36 +0000 Subject: [PATCH 24/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index c7df7d8..2e83c6e 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 1%{?dist} +Release: 2%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -66,6 +66,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + * Sun Aug 05 2018 Adam Huffman - 0.1.16-1 - Update to latest upstream release 0.1.16 From 0f847ec3987436c5cbdbca7a7da53a729e958fca Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Petr=20P=C3=ADsa=C5=99?= Date: Mon, 17 Jun 2019 13:44:16 +0200 Subject: [PATCH 25/50] Install Perl modules into a vendor Perl path Perl 5.30 in Fedora changed site paths. As a result this package stopped building. As site paths are for local admins (/usr/local), this patch fixes it by installing the modules into a vendor Perl path. --- vcftools.spec | 16 +++++++++++----- 1 file changed, 11 insertions(+), 5 deletions(-) diff --git a/vcftools.spec b/vcftools.spec index 2e83c6e..0315680 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 2%{?dist} +Release: 3%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -8,7 +8,9 @@ URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz BuildRequires: gcc-c++ BuildRequires: perl-generators +BuildRequires: perl-interpreter BuildRequires: zlib-devel +Requires: perl(:MODULE_COMPAT_%(eval "`perl -V:version`"; echo $version)) %description @@ -21,7 +23,8 @@ comparing and calculate some basic population genetic statistics. %setup -q -n %{name}-%{version} %build -%configure +%configure --with-pmdir=%(perl -e 'print $ARGV[0] =~ s{\A\Q$ARGV[1]\E/}{}r' \ + %{perl_vendorlib} %{_exec_prefix}) %make_build %check @@ -60,12 +63,15 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_bindir}/vcf-tstv %{_bindir}/vcf-fix-newlines %{_bindir}/vcftools -%{_datadir}/perl5/FaSlice.pm -%{_datadir}/perl5/Vcf.pm -%{_datadir}/perl5/VcfStats.pm +%{perl_vendorlib}/FaSlice.pm +%{perl_vendorlib}/Vcf.pm +%{perl_vendorlib}/VcfStats.pm %{_mandir}/man1/vcftools.1.gz %changelog +* Mon Jun 17 2019 Petr Pisar - 0.1.16-3 +- Install Perl modules into a vendor Perl path + * Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild From f41091407f53d92cebae8c8ce5666a45d45e6829 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 27 Jul 2019 02:49:15 +0000 Subject: [PATCH 26/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 0315680..273895c 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 3%{?dist} +Release: 4%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild + * Mon Jun 17 2019 Petr Pisar - 0.1.16-3 - Install Perl modules into a vendor Perl path From 01826840a35fd7328159240c048eb3df876216dc Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Fri, 31 Jan 2020 02:58:04 +0000 Subject: [PATCH 27/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 273895c..8fbfbdb 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 4%{?dist} +Release: 5%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + * Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild From c52e641a03aafc2d6b7daff702dc101dce38d29a Mon Sep 17 00:00:00 2001 From: Jitka Plesnikova Date: Mon, 22 Jun 2020 19:26:39 +0200 Subject: [PATCH 28/50] Perl 5.32 rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 8fbfbdb..d6306c7 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 5%{?dist} +Release: 6%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Mon Jun 22 2020 Jitka Plesnikova - 0.1.16-6 +- Perl 5.32 rebuild + * Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild From 93d4bd9d48a6a49e2af5c3bccca1384b1f627517 Mon Sep 17 00:00:00 2001 From: Jitka Plesnikova Date: Fri, 26 Jun 2020 17:31:22 +0200 Subject: [PATCH 29/50] Perl 5.32 re-rebuild of bootstrapped packages --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index d6306c7..d049db6 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 6%{?dist} +Release: 7%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Fri Jun 26 2020 Jitka Plesnikova - 0.1.16-7 +- Perl 5.32 re-rebuild of bootstrapped packages + * Mon Jun 22 2020 Jitka Plesnikova - 0.1.16-6 - Perl 5.32 rebuild From 494435ebb6f1090770a378aaea18f9defffdf1ba Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Wed, 29 Jul 2020 13:34:20 +0000 Subject: [PATCH 30/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index d049db6..2df9aaf 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 7%{?dist} +Release: 8%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Wed Jul 29 2020 Fedora Release Engineering - 0.1.16-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + * Fri Jun 26 2020 Jitka Plesnikova - 0.1.16-7 - Perl 5.32 re-rebuild of bootstrapped packages From 923de24f704bb34f40208c593332e4547159a94b Mon Sep 17 00:00:00 2001 From: Tom Stellard Date: Sat, 9 Jan 2021 00:35:40 +0000 Subject: [PATCH 31/50] Add BuildRequires: make https://fedoraproject.org/wiki/Changes/Remove_make_from_BuildRoot --- vcftools.spec | 1 + 1 file changed, 1 insertion(+) diff --git a/vcftools.spec b/vcftools.spec index 2df9aaf..5e986da 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -6,6 +6,7 @@ Summary: VCF file manipulation tools License: GPLv3 URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz +BuildRequires: make BuildRequires: gcc-c++ BuildRequires: perl-generators BuildRequires: perl-interpreter From 6a4f8888bcfadfcd4a72142ee91c87b0db2d59c3 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Wed, 27 Jan 2021 22:55:54 +0000 Subject: [PATCH 32/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 5e986da..f91b0fd 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 8%{?dist} +Release: 9%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Wed Jan 27 2021 Fedora Release Engineering - 0.1.16-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild + * Wed Jul 29 2020 Fedora Release Engineering - 0.1.16-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild From d08fe06165f4dc28bbc839c3f14b6dd9442fe0bf Mon Sep 17 00:00:00 2001 From: Jitka Plesnikova Date: Fri, 21 May 2021 12:03:05 +0200 Subject: [PATCH 33/50] Perl 5.34 rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index f91b0fd..1023105 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 9%{?dist} +Release: 10%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Fri May 21 2021 Jitka Plesnikova - 0.1.16-10 +- Perl 5.34 rebuild + * Wed Jan 27 2021 Fedora Release Engineering - 0.1.16-9 - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild From e7fa2d1793b03b9f9890804312e9d67df4d95d5f Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Fri, 23 Jul 2021 20:19:51 +0000 Subject: [PATCH 34/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 1023105..98f1bd9 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 10%{?dist} +Release: 11%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Fri Jul 23 2021 Fedora Release Engineering - 0.1.16-11 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild + * Fri May 21 2021 Jitka Plesnikova - 0.1.16-10 - Perl 5.34 rebuild From dda0c464ceb7e2ff98e3bec309a0b5414ccdfda6 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 22 Jan 2022 03:49:08 +0000 Subject: [PATCH 35/50] - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 98f1bd9..fb4659e 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 11%{?dist} +Release: 12%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jan 22 2022 Fedora Release Engineering - 0.1.16-12 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild + * Fri Jul 23 2021 Fedora Release Engineering - 0.1.16-11 - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild From 96f12557d4bfb37107f0eaad8ef5ee810fabbb5c Mon Sep 17 00:00:00 2001 From: Jitka Plesnikova Date: Mon, 30 May 2022 19:23:38 +0200 Subject: [PATCH 36/50] Perl 5.36 rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index fb4659e..8c02228 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 12%{?dist} +Release: 13%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Mon May 30 2022 Jitka Plesnikova - 0.1.16-13 +- Perl 5.36 rebuild + * Sat Jan 22 2022 Fedora Release Engineering - 0.1.16-12 - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild From 69e293a1c434ffda7723f19245be21d45ba11452 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 23 Jul 2022 11:42:49 +0000 Subject: [PATCH 37/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 8c02228..cbf69f1 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 13%{?dist} +Release: 14%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jul 23 2022 Fedora Release Engineering - 0.1.16-14 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild + * Mon May 30 2022 Jitka Plesnikova - 0.1.16-13 - Perl 5.36 rebuild From 3e22238224e4f6a5e9047474aa857596b51dde8f Mon Sep 17 00:00:00 2001 From: Filipe Rosset Date: Thu, 1 Sep 2022 18:45:49 -0300 Subject: [PATCH 38/50] - spec cleanup and modernization --- vcftools.spec | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/vcftools.spec b/vcftools.spec index cbf69f1..93b14b7 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,12 +1,12 @@ Name: vcftools Version: 0.1.16 -Release: 14%{?dist} +Release: 15%{?dist} Summary: VCF file manipulation tools License: GPLv3 URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz -BuildRequires: make +BuildRequires: make BuildRequires: gcc-c++ BuildRequires: perl-generators BuildRequires: perl-interpreter @@ -21,7 +21,7 @@ provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. %prep -%setup -q -n %{name}-%{version} +%autosetup %build %configure --with-pmdir=%(perl -e 'print $ARGV[0] =~ s{\A\Q$ARGV[1]\E/}{}r' \ @@ -32,7 +32,7 @@ comparing and calculate some basic population genetic statistics. make check %install -make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' +%make_install %files @@ -70,6 +70,9 @@ make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p' %{_mandir}/man1/vcftools.1.gz %changelog +* Thu Sep 01 2022 Filipe Rosset - 0.1.16-15 +- spec cleanup and modernization + * Sat Jul 23 2022 Fedora Release Engineering - 0.1.16-14 - Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild From acbb7bd7476cba834700ffa7e52a6d72a62c968f Mon Sep 17 00:00:00 2001 From: Jitka Plesnikova Date: Fri, 13 Jan 2023 21:17:49 +0100 Subject: [PATCH 39/50] Remove perl(MODULE_COMPAT), it will be replaced by generators --- vcftools.spec | 1 - 1 file changed, 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 93b14b7..4147ffb 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -11,7 +11,6 @@ BuildRequires: gcc-c++ BuildRequires: perl-generators BuildRequires: perl-interpreter BuildRequires: zlib-devel -Requires: perl(:MODULE_COMPAT_%(eval "`perl -V:version`"; echo $version)) %description From 995ca54fe6f6c9f6db9a83e973356aac78f042a7 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 21 Jan 2023 06:08:05 +0000 Subject: [PATCH 40/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 4147ffb..8bd297b 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 15%{?dist} +Release: 16%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jan 21 2023 Fedora Release Engineering - 0.1.16-16 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild + * Thu Sep 01 2022 Filipe Rosset - 0.1.16-15 - spec cleanup and modernization From 8250c08d92162844e589a9488de51c127358b3de Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 22 Jul 2023 17:27:02 +0000 Subject: [PATCH 41/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild Signed-off-by: Fedora Release Engineering --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 8bd297b..ec61535 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 16%{?dist} +Release: 17%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jul 22 2023 Fedora Release Engineering - 0.1.16-17 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild + * Sat Jan 21 2023 Fedora Release Engineering - 0.1.16-16 - Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild From 618e4eab0df978633e60d1a093e84ac976ceec8a Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 27 Jan 2024 07:32:32 +0000 Subject: [PATCH 42/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index ec61535..c63f346 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 17%{?dist} +Release: 18%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jan 27 2024 Fedora Release Engineering - 0.1.16-18 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild + * Sat Jul 22 2023 Fedora Release Engineering - 0.1.16-17 - Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild From 5bd87dbd1dcda253dcdb0de89965363b419cd21b Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 20 Jul 2024 08:36:13 +0000 Subject: [PATCH 43/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index c63f346..5e28dc0 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 18%{?dist} +Release: 19%{?dist} Summary: VCF file manipulation tools License: GPLv3 @@ -69,6 +69,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Sat Jul 20 2024 Fedora Release Engineering - 0.1.16-19 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild + * Sat Jan 27 2024 Fedora Release Engineering - 0.1.16-18 - Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild From 864c18990b542227460811acbd1ac6e85de39c1c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Miroslav=20Such=C3=BD?= Date: Mon, 29 Jul 2024 14:44:32 +0200 Subject: [PATCH 44/50] convert GPLv3 license to SPDX This is part of https://fedoraproject.org/wiki/Changes/SPDX_Licenses_Phase_4 --- vcftools.spec | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/vcftools.spec b/vcftools.spec index 5e28dc0..d80043a 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,9 +1,10 @@ Name: vcftools Version: 0.1.16 -Release: 19%{?dist} +Release: 20%{?dist} Summary: VCF file manipulation tools -License: GPLv3 +# Automatically converted from old format: GPLv3 - review is highly recommended. +License: GPL-3.0-only URL: https://vcftools.github.io/ Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz BuildRequires: make @@ -69,6 +70,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Mon Jul 29 2024 Miroslav Suchý - 0.1.16-20 +- convert license to SPDX + * Sat Jul 20 2024 Fedora Release Engineering - 0.1.16-19 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild From ce392b809ac4a5a04f0d775eb68f5549904d2a6a Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sun, 19 Jan 2025 14:08:49 +0000 Subject: [PATCH 45/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index d80043a..17f5d67 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 20%{?dist} +Release: 21%{?dist} Summary: VCF file manipulation tools # Automatically converted from old format: GPLv3 - review is highly recommended. @@ -70,6 +70,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Sun Jan 19 2025 Fedora Release Engineering - 0.1.16-21 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild + * Mon Jul 29 2024 Miroslav Suchý - 0.1.16-20 - convert license to SPDX From 2074c1fa597a244c1e6660e858d5b54f1a65eea4 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Fri, 25 Jul 2025 19:59:11 +0000 Subject: [PATCH 46/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild --- vcftools.spec | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/vcftools.spec b/vcftools.spec index 17f5d67..012bc7a 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,6 +1,6 @@ Name: vcftools Version: 0.1.16 -Release: 21%{?dist} +Release: 22%{?dist} Summary: VCF file manipulation tools # Automatically converted from old format: GPLv3 - review is highly recommended. @@ -70,6 +70,9 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog +* Fri Jul 25 2025 Fedora Release Engineering - 0.1.16-22 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild + * Sun Jan 19 2025 Fedora Release Engineering - 0.1.16-21 - Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild From c5fc28c05e5d5d0abeaac899f14147456f0c45e0 Mon Sep 17 00:00:00 2001 From: Filipe Rosset Date: Sun, 9 Nov 2025 16:00:51 -0300 Subject: [PATCH 47/50] opt-in to autochangelog --- changelog | 156 ++++++++++++++++++++++++++++++++++++++++++++++++ vcftools.spec | 161 +------------------------------------------------- 2 files changed, 158 insertions(+), 159 deletions(-) create mode 100644 changelog diff --git a/changelog b/changelog new file mode 100644 index 0000000..0f37f6f --- /dev/null +++ b/changelog @@ -0,0 +1,156 @@ +* Fri Jul 25 2025 Fedora Release Engineering - 0.1.16-22 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild + +* Sun Jan 19 2025 Fedora Release Engineering - 0.1.16-21 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild + +* Mon Jul 29 2024 Miroslav Suchý - 0.1.16-20 +- convert license to SPDX + +* Sat Jul 20 2024 Fedora Release Engineering - 0.1.16-19 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild + +* Sat Jan 27 2024 Fedora Release Engineering - 0.1.16-18 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild + +* Sat Jul 22 2023 Fedora Release Engineering - 0.1.16-17 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild + +* Sat Jan 21 2023 Fedora Release Engineering - 0.1.16-16 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild + +* Thu Sep 01 2022 Filipe Rosset - 0.1.16-15 +- spec cleanup and modernization + +* Sat Jul 23 2022 Fedora Release Engineering - 0.1.16-14 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild + +* Mon May 30 2022 Jitka Plesnikova - 0.1.16-13 +- Perl 5.36 rebuild + +* Sat Jan 22 2022 Fedora Release Engineering - 0.1.16-12 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild + +* Fri Jul 23 2021 Fedora Release Engineering - 0.1.16-11 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild + +* Fri May 21 2021 Jitka Plesnikova - 0.1.16-10 +- Perl 5.34 rebuild + +* Wed Jan 27 2021 Fedora Release Engineering - 0.1.16-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild + +* Wed Jul 29 2020 Fedora Release Engineering - 0.1.16-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild + +* Fri Jun 26 2020 Jitka Plesnikova - 0.1.16-7 +- Perl 5.32 re-rebuild of bootstrapped packages + +* Mon Jun 22 2020 Jitka Plesnikova - 0.1.16-6 +- Perl 5.32 rebuild + +* Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild + +* Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild + +* Mon Jun 17 2019 Petr Pisar - 0.1.16-3 +- Install Perl modules into a vendor Perl path + +* Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild + +* Sun Aug 05 2018 Adam Huffman - 0.1.16-1 +- Update to latest upstream release 0.1.16 + +* Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild + +* Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 +- added gcc-c++ as BR + +* Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild + +* Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild + +* Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 +- Update to latest upstream release 0.1.15 + +* Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild + +* Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 +- Update to latest upstream release 0.1.14 +- Fix FTBFS rhbz #1308219 +- Fix rhbz #1365319 thanks to Aram Minasyan +- Spec modernization/clean up, new URLs from GitHub + +* Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild + +* Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild + +* Sat May 02 2015 Kalev Lember - 0.1.11-7 +- Rebuilt for GCC 5 C++11 ABI change + +* Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild + +* Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild + +* Sat Aug 03 2013 Petr Pisar - 0.1.11-4 +- Perl 5.18 rebuild + +* Tue Jul 30 2013 Peter Robinson 0.1.11-3 +- Use distro CFLAGS (fix FTBFS on ARM) + +* Thu Jul 18 2013 Petr Pisar - 0.1.11-2 +- Perl 5.18 rebuild + +* Wed Jul 03 2013 - 0.1.11-1 +- Update to latest upstream release 0.1.11 + +* Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild + +* Sun Jul 29 2012 - 0.1.9-1 +- Update to 0.1.9 +- Remove perl patch that's no longer needed + +* Thu Jan 5 2012 Adam Huffman - 0.1.7-1 +- update to upstream release 0.1.7 +- remove fill-rsIDs +- update Perl makefile patch + +* Sun Jul 31 2011 Adam Huffman - 0.1.6-1 +- update to 0.1.6 + +* Tue May 3 2011 Adam Huffman - 0.1.5-2 +- minor fix to Jack's Perl patch +- permissions fix +- hardcoded path fix +- cleaner Makefile fix + +* Sun May 1 2011 Jack Tanner - 0.1.5-1 +- bump to 0.1.5 +- rename compare-vcf, merge-vcf, and query-vcf to vcf-compare, + vcf-merge, and vcf-query +- add VcfStats.pm to perl export +- patch perl/Makefile to export VcfStats.pm + +* Mon Mar 21 2011 Adam Huffman - 0.1.4a-1 +- initial version +- fix CPPFLAGS +- fix hardcoded installation location + diff --git a/vcftools.spec b/vcftools.spec index 012bc7a..84d7e3d 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,8 +1,7 @@ Name: vcftools Version: 0.1.16 -Release: 22%{?dist} +Release: %autorelease Summary: VCF file manipulation tools - # Automatically converted from old format: GPLv3 - review is highly recommended. License: GPL-3.0-only URL: https://vcftools.github.io/ @@ -13,7 +12,6 @@ BuildRequires: perl-generators BuildRequires: perl-interpreter BuildRequires: zlib-devel - %description A program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to @@ -70,159 +68,4 @@ make check %{_mandir}/man1/vcftools.1.gz %changelog -* Fri Jul 25 2025 Fedora Release Engineering - 0.1.16-22 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild - -* Sun Jan 19 2025 Fedora Release Engineering - 0.1.16-21 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild - -* Mon Jul 29 2024 Miroslav Suchý - 0.1.16-20 -- convert license to SPDX - -* Sat Jul 20 2024 Fedora Release Engineering - 0.1.16-19 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild - -* Sat Jan 27 2024 Fedora Release Engineering - 0.1.16-18 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_40_Mass_Rebuild - -* Sat Jul 22 2023 Fedora Release Engineering - 0.1.16-17 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_39_Mass_Rebuild - -* Sat Jan 21 2023 Fedora Release Engineering - 0.1.16-16 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_38_Mass_Rebuild - -* Thu Sep 01 2022 Filipe Rosset - 0.1.16-15 -- spec cleanup and modernization - -* Sat Jul 23 2022 Fedora Release Engineering - 0.1.16-14 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_37_Mass_Rebuild - -* Mon May 30 2022 Jitka Plesnikova - 0.1.16-13 -- Perl 5.36 rebuild - -* Sat Jan 22 2022 Fedora Release Engineering - 0.1.16-12 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild - -* Fri Jul 23 2021 Fedora Release Engineering - 0.1.16-11 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild - -* Fri May 21 2021 Jitka Plesnikova - 0.1.16-10 -- Perl 5.34 rebuild - -* Wed Jan 27 2021 Fedora Release Engineering - 0.1.16-9 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild - -* Wed Jul 29 2020 Fedora Release Engineering - 0.1.16-8 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild - -* Fri Jun 26 2020 Jitka Plesnikova - 0.1.16-7 -- Perl 5.32 re-rebuild of bootstrapped packages - -* Mon Jun 22 2020 Jitka Plesnikova - 0.1.16-6 -- Perl 5.32 rebuild - -* Fri Jan 31 2020 Fedora Release Engineering - 0.1.16-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild - -* Sat Jul 27 2019 Fedora Release Engineering - 0.1.16-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Mon Jun 17 2019 Petr Pisar - 0.1.16-3 -- Install Perl modules into a vendor Perl path - -* Sun Feb 03 2019 Fedora Release Engineering - 0.1.16-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Sun Aug 05 2018 Adam Huffman - 0.1.16-1 -- Update to latest upstream release 0.1.16 - -* Sat Jul 14 2018 Fedora Release Engineering - 0.1.15-7 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Mon Apr 09 2018 Filipe Rosset - 0.1.15-6 -- added gcc-c++ as BR - -* Fri Feb 09 2018 Fedora Release Engineering - 0.1.15-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Thu Aug 03 2017 Fedora Release Engineering - 0.1.15-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild - -* Thu Jul 27 2017 Fedora Release Engineering - 0.1.15-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Mon May 15 2017 Fedora Release Engineering - 0.1.15-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild - -* Fri Apr 21 2017 Filipe Rosset - 0.1.15-1 -- Update to latest upstream release 0.1.15 - -* Sat Feb 11 2017 Fedora Release Engineering - 0.1.14-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild - -* Tue Nov 08 2016 Filipe Rosset - 0.1.14-1 -- Update to latest upstream release 0.1.14 -- Fix FTBFS rhbz #1308219 -- Fix rhbz #1365319 thanks to Aram Minasyan -- Spec modernization/clean up, new URLs from GitHub - -* Fri Feb 05 2016 Fedora Release Engineering - 0.1.11-9 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Fri Jun 19 2015 Fedora Release Engineering - 0.1.11-8 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Sat May 02 2015 Kalev Lember - 0.1.11-7 -- Rebuilt for GCC 5 C++11 ABI change - -* Mon Aug 18 2014 Fedora Release Engineering - 0.1.11-6 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild - -* Sun Jun 08 2014 Fedora Release Engineering - 0.1.11-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Sat Aug 03 2013 Petr Pisar - 0.1.11-4 -- Perl 5.18 rebuild - -* Tue Jul 30 2013 Peter Robinson 0.1.11-3 -- Use distro CFLAGS (fix FTBFS on ARM) - -* Thu Jul 18 2013 Petr Pisar - 0.1.11-2 -- Perl 5.18 rebuild - -* Wed Jul 03 2013 - 0.1.11-1 -- Update to latest upstream release 0.1.11 - -* Fri Feb 15 2013 Fedora Release Engineering - 0.1.9-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild - -* Sun Jul 29 2012 - 0.1.9-1 -- Update to 0.1.9 -- Remove perl patch that's no longer needed - -* Thu Jan 5 2012 Adam Huffman - 0.1.7-1 -- update to upstream release 0.1.7 -- remove fill-rsIDs -- update Perl makefile patch - -* Sun Jul 31 2011 Adam Huffman - 0.1.6-1 -- update to 0.1.6 - -* Tue May 3 2011 Adam Huffman - 0.1.5-2 -- minor fix to Jack's Perl patch -- permissions fix -- hardcoded path fix -- cleaner Makefile fix - -* Sun May 1 2011 Jack Tanner - 0.1.5-1 -- bump to 0.1.5 -- rename compare-vcf, merge-vcf, and query-vcf to vcf-compare, - vcf-merge, and vcf-query -- add VcfStats.pm to perl export -- patch perl/Makefile to export VcfStats.pm - -* Mon Mar 21 2011 Adam Huffman - 0.1.4a-1 -- initial version -- fix CPPFLAGS -- fix hardcoded installation location - +%autochangelog From 975fa63c92b3634b4bd6650d6d49ef1b73a23cb1 Mon Sep 17 00:00:00 2001 From: Filipe Rosset Date: Sun, 9 Nov 2025 19:26:47 -0300 Subject: [PATCH 48/50] update to 0.1.17 --- .gitignore | 1 + sources | 2 +- vcftools.spec | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/.gitignore b/.gitignore index 7c0a8bc..61d265c 100644 --- a/.gitignore +++ b/.gitignore @@ -3,3 +3,4 @@ /vcftools-0.1.14.tar.gz /vcftools-0.1.15.tar.gz /vcftools-0.1.16.tar.gz +/vcftools-0.1.17.tar.gz diff --git a/sources b/sources index 1088c67..6131466 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -SHA512 (vcftools-0.1.16.tar.gz) = c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6 +SHA512 (vcftools-0.1.17.tar.gz) = 8adf2490b5d0886302f8f19efc735e4b96d657d70a764b6fa397acdf6f83b54da29dc73e9b96b275a793a511996c415630255610249e6eb5441bc783e82853d9 diff --git a/vcftools.spec b/vcftools.spec index 84d7e3d..ab1d67f 100644 --- a/vcftools.spec +++ b/vcftools.spec @@ -1,5 +1,5 @@ Name: vcftools -Version: 0.1.16 +Version: 0.1.17 Release: %autorelease Summary: VCF file manipulation tools # Automatically converted from old format: GPLv3 - review is highly recommended. From dd682cb08295184f1a6e4350ca0d0951e7eb9154 Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Sat, 17 Jan 2026 19:48:28 +0000 Subject: [PATCH 49/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_44_Mass_Rebuild From a1d5789906f6f37b48459bf6e9fe3ff4c501f57c Mon Sep 17 00:00:00 2001 From: Fedora Release Engineering Date: Fri, 17 Jul 2026 08:23:13 +0000 Subject: [PATCH 50/50] Rebuilt for https://fedoraproject.org/wiki/Fedora_45_Mass_Rebuild