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epel8-play
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4 changed files with 1 additions and 182 deletions
5
.gitignore
vendored
5
.gitignore
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/vcftools_0.1.9.tar.gz
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/vcftools_0.1.11.tar.gz
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/vcftools-0.1.14.tar.gz
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/vcftools-0.1.15.tar.gz
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/vcftools-0.1.16.tar.gz
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dead.package
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dead.package
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epel8-playground decommissioned : https://pagure.io/epel/issue/136
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1
sources
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sources
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SHA512 (vcftools-0.1.16.tar.gz) = c4dd5ceb3ad0512e839154d8a05ef3e7a03cbe52c3099df48775b35460fce7ef10102819c2d1cefa33b98ad09e7bd1608e871978860ec9c0b0c2e781892b22e6
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176
vcftools.spec
176
vcftools.spec
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Name: vcftools
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Version: 0.1.16
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Release: 5%{?dist}
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Summary: VCF file manipulation tools
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License: GPLv3
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URL: https://vcftools.github.io/
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Source0: https://github.com/%{name}/%{name}/releases/download/v%{version}/%{name}-%{version}.tar.gz
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BuildRequires: gcc-c++
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BuildRequires: perl-generators
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BuildRequires: perl-interpreter
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BuildRequires: zlib-devel
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Requires: perl(:MODULE_COMPAT_%(eval "`perl -V:version`"; echo $version))
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%description
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A program package designed for working with VCF files, such as those
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generated by the 1000 Genomes Project. The aim of VCFtools is to
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provide methods for working with VCF files: validating, merging,
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comparing and calculate some basic population genetic statistics.
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%prep
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%setup -q -n %{name}-%{version}
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%build
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%configure --with-pmdir=%(perl -e 'print $ARGV[0] =~ s{\A\Q$ARGV[1]\E/}{}r' \
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%{perl_vendorlib} %{_exec_prefix})
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%make_build
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%check
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make check
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%install
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make install DESTDIR=$RPM_BUILD_ROOT INSTALL='install -p'
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%files
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%doc README.md
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%license LICENSE
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%{_bindir}/vcf-compare
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%{_bindir}/fill-aa
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%{_bindir}/fill-an-ac
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#%%{_bindir}/fill-rsIDs
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%{_bindir}/vcf-merge
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%{_bindir}/vcf-query
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%{_bindir}/vcf-annotate
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%{_bindir}/vcf-concat
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%{_bindir}/vcf-convert
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%{_bindir}/vcf-isec
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%{_bindir}/vcf-sort
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%{_bindir}/vcf-stats
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%{_bindir}/vcf-subset
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%{_bindir}/vcf-to-tab
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%{_bindir}/vcf-validator
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%{_bindir}/fill-fs
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%{_bindir}/fill-ref-md5
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%{_bindir}/vcf-consensus
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%{_bindir}/vcf-contrast
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%{_bindir}/vcf-fix-ploidy
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%{_bindir}/vcf-indel-stats
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%{_bindir}/vcf-phased-join
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%{_bindir}/vcf-shuffle-cols
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%{_bindir}/vcf-tstv
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%{_bindir}/vcf-fix-newlines
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%{_bindir}/vcftools
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%{perl_vendorlib}/FaSlice.pm
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%{perl_vendorlib}/Vcf.pm
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%{perl_vendorlib}/VcfStats.pm
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%{_mandir}/man1/vcftools.1.gz
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%changelog
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* Fri Jan 31 2020 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.16-5
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
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* Sat Jul 27 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.16-4
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild
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* Mon Jun 17 2019 Petr Pisar <ppisar@redhat.com> - 0.1.16-3
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- Install Perl modules into a vendor Perl path
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* Sun Feb 03 2019 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.16-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild
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* Sun Aug 05 2018 Adam Huffman <bloch@verdurin.com> - 0.1.16-1
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- Update to latest upstream release 0.1.16
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* Sat Jul 14 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.15-7
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild
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* Mon Apr 09 2018 Filipe Rosset <rosset.filipe@gmail.com> - 0.1.15-6
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- added gcc-c++ as BR
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* Fri Feb 09 2018 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.15-5
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild
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* Thu Aug 03 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.15-4
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild
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* Thu Jul 27 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.15-3
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild
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* Mon May 15 2017 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.15-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_27_Mass_Rebuild
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* Fri Apr 21 2017 Filipe Rosset <rosset.filipe@gmail.com> - 0.1.15-1
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- Update to latest upstream release 0.1.15
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* Sat Feb 11 2017 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.14-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild
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* Tue Nov 08 2016 Filipe Rosset <rosset.filipe@gmail.com> - 0.1.14-1
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- Update to latest upstream release 0.1.14
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- Fix FTBFS rhbz #1308219
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- Fix rhbz #1365319 thanks to Aram Minasyan
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- Spec modernization/clean up, new URLs from GitHub
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* Fri Feb 05 2016 Fedora Release Engineering <releng@fedoraproject.org> - 0.1.11-9
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild
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* Fri Jun 19 2015 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.11-8
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild
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* Sat May 02 2015 Kalev Lember <kalevlember@gmail.com> - 0.1.11-7
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- Rebuilt for GCC 5 C++11 ABI change
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* Mon Aug 18 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.11-6
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild
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* Sun Jun 08 2014 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.11-5
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild
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* Sat Aug 03 2013 Petr Pisar <ppisar@redhat.com> - 0.1.11-4
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- Perl 5.18 rebuild
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* Tue Jul 30 2013 Peter Robinson <pbrobinson@fedoraproject.org> 0.1.11-3
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- Use distro CFLAGS (fix FTBFS on ARM)
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* Thu Jul 18 2013 Petr Pisar <ppisar@redhat.com> - 0.1.11-2
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- Perl 5.18 rebuild
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* Wed Jul 03 2013 <bloch@verdurin.com> - 0.1.11-1
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- Update to latest upstream release 0.1.11
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* Fri Feb 15 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org> - 0.1.9-2
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- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild
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* Sun Jul 29 2012 <bloch@verdurin.com> - 0.1.9-1
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- Update to 0.1.9
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- Remove perl patch that's no longer needed
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* Thu Jan 5 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.1.7-1
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- update to upstream release 0.1.7
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- remove fill-rsIDs
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- update Perl makefile patch
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* Sun Jul 31 2011 Adam Huffman <bloch@verdurin.com> - 0.1.6-1
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- update to 0.1.6
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* Tue May 3 2011 Adam Huffman <bloch@verdurin.com> - 0.1.5-2
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- minor fix to Jack's Perl patch
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- permissions fix
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- hardcoded path fix
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- cleaner Makefile fix
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* Sun May 1 2011 Jack Tanner <ihok@hotmail.com> - 0.1.5-1
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- bump to 0.1.5
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- rename compare-vcf, merge-vcf, and query-vcf to vcf-compare,
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vcf-merge, and vcf-query
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- add VcfStats.pm to perl export
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- patch perl/Makefile to export VcfStats.pm
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* Mon Mar 21 2011 Adam Huffman <bloch@verdurin.com> - 0.1.4a-1
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- initial version
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- fix CPPFLAGS
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- fix hardcoded installation location
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