95 lines
2.3 KiB
RPMSpec
95 lines
2.3 KiB
RPMSpec
Name: vcftools
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Version: 0.1.9
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Release: 1%{?dist}
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Summary: VCF file manipulation tools
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Group: Applications/Engineering
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License: GPLv3
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URL: http://vcftools.sourceforge.net/
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Source0: http://downloads.sourceforge.net/%{name}/%{name}_%{version}.tar.gz
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BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
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BuildRequires: zlib-devel
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%description
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A program package designed for working with VCF files, such as those
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generated by the 1000 Genomes Project. The aim of VCFtools is to
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provide methods for working with VCF files: validating, merging,
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comparing and calculate some basic population genetic statistics.
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%prep
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%setup -q -n %{name}_%{version}
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#%patch0 -p1
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%build
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make %{?_smp_mflags} CPPFLAGS="%{optflags}"
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%install
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rm -rf %{buildroot}
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make install PREFIX=%{buildroot}/usr MODDIR="%{buildroot}/%{perl_vendorarch}" \
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BINDIR="%{buildroot}/%{_bindir}"
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install -m 0775 %{_builddir}/%{name}_%{version}/cpp/vcftools %{buildroot}/%{_bindir}
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%clean
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rm -rf %{buildroot}
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%files
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%defattr(-,root,root,-)
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%doc README.txt
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%{_bindir}/vcf-compare
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%{_bindir}/fill-aa
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%{_bindir}/fill-an-ac
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#%%{_bindir}/fill-rsIDs
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%{_bindir}/vcf-merge
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%{_bindir}/vcf-query
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%{_bindir}/vcf-annotate
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%{_bindir}/vcf-concat
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%{_bindir}/vcf-convert
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%{_bindir}/vcf-isec
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%{_bindir}/vcf-sort
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%{_bindir}/vcf-stats
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%{_bindir}/vcf-subset
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%{_bindir}/vcf-to-tab
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%{_bindir}/vcf-validator
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%attr(0755, root, root) %{_bindir}/vcftools
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%{perl_vendorarch}/FaSlice.pm
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%{perl_vendorarch}/Vcf.pm
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%{perl_vendorarch}/VcfStats.pm
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%changelog
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* Sun Jul 29 2012 <bloch@verdurin.com> - 0.1.9-1
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- Update to 0.1.9
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- Remove perl patch that's no longer needed
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* Thu Jan 5 2012 Adam Huffman <verdurin@fedoraproject.org> - 0.1.7-1
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- update to upstream release 0.1.7
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- remove fill-rsIDs
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- update Perl makefile patch
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* Sun Jul 31 2011 Adam Huffman <bloch@verdurin.com> - 0.1.6-1
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- update to 0.1.6
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* Tue May 3 2011 Adam Huffman <bloch@verdurin.com> - 0.1.5-2
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- minor fix to Jack's Perl patch
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- permissions fix
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- hardcoded path fix
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- cleaner Makefile fix
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* Sun May 1 2011 Jack Tanner <ihok@hotmail.com> - 0.1.5-1
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- bump to 0.1.5
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- rename compare-vcf, merge-vcf, and query-vcf to vcf-compare,
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vcf-merge, and vcf-query
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- add VcfStats.pm to perl export
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- patch perl/Makefile to export VcfStats.pm
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* Mon Mar 21 2011 Adam Huffman <bloch@verdurin.com> - 0.1.4a-1
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- initial version
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- fix CPPFLAGS
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- fix hardcoded installation location
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