dist-git conversion

#2781)

.gitignore

@@ -0,0 +1 @@
+vhybridize-0.5.9.tar.gz

Makefile

@@ -1,21 +0,0 @@
-# Makefile for source rpm: vhybridize
-# $Id$
-NAME := vhybridize
-SPECFILE = $(firstword $(wildcard *.spec))
-
-define find-makefile-common
-for d in common ../common ../../common ; do if [ -f $$d/Makefile.common ] ; then if [ -f $$d/CVS/Root -a -w $$/Makefile.common ] ; then cd $$d ; cvs -Q update ; fi ; echo "$$d/Makefile.common" ; break ; fi ; done
-endef
-
-MAKEFILE_COMMON := $(shell $(find-makefile-common))
-
-ifeq ($(MAKEFILE_COMMON),)
-# attept a checkout
-define checkout-makefile-common
-test -f CVS/Root && { cvs -Q -d $$(cat CVS/Root) checkout common && echo "common/Makefile.common" ; } || { echo "ERROR: I can't figure out how to checkout the 'common' module." ; exit -1 ; } >&2
-endef
-
-MAKEFILE_COMMON := $(shell $(checkout-makefile-common))
-endif
-
-include $(MAKEFILE_COMMON)

sources

@@ -0,0 +1 @@
+f962b32a9bae82bd67e28f29ad783327  vhybridize-0.5.9.tar.gz

vhybridize.spec

@@ -0,0 +1,62 @@
+%{!?python_sitelib: %define python_sitelib %(%{__python} -c "from distutils.sysconfig import get_python_lib; print get_python_lib()")}
+
+Name:           vhybridize
+Version:        0.5.9
+Release:        2%{?dist}
+Summary:        Virtual Hybridization command line tools
+
+Group:          Applications/Engineering
+License:        GPLv3+
+URL:            http://ygingras.net/bioinfo
+Source0:        http://ygingras.net/files/%{name}-%{version}.tar.gz
+BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)     
+BuildArch:      noarch
+
+BuildRequires:  python
+BuildRequires:  python-setuptools-devel
+
+
+%description
+Virtual Hybridization uses sets of short probes to generate datasets
+for comparative genomics: given a DNA sequence and a set of probes,
+the typical output will give a sequence of oriented probe hits along
+the DNA sequence. Other tools are supplied to allow simple manipulations
+such as format conversion and extraction of permutations.
+
+
+%prep
+%setup -q
+
+
+%build
+python ./setup.py build
+
+
+%install
+rm -rf %{buildroot}
+python ./setup.py install --skip-build --root %{buildroot}
+#remove shebang
+for file in \
+    %{buildroot}%{python_sitelib}/%{name}/scripts/{to_permutation.py,split_multi_fasta.py} \
+    %{buildroot}%{python_sitelib}/%{name}/{utils.py,locate.py}   \
+    %{buildroot}%{python_sitelib}/%{name}/scripts/{to_vhx.py,merge.py,filter.py}; do
+    sed -i -e '/^#!\//, 1d' $file
+done
+
+%clean
+rm -rf %{buildroot}
+
+%files
+%defattr(-,root,root,-)
+%doc AUTHORS.txt COPYING.txt README.txt TODO.txt docs/ examples/
+%{_bindir}/vhy*
+%{python_sitelib}/%{name}/
+%{python_sitelib}/%{name}*.egg-info
+
+
+%changelog
+* Sat Jan 24 2009 Fabian Affolter <fabian@bernewireless.net> - 0.5.9-2
+- Fixes from #481509 Comment #1
+
+* Sat Jan 24 2009 Fabian Affolter <fabian@bernewireless.net> - 0.5.9-1
+- Initial package for Fedora