Orphaned by upstream; no longer needed in Fedora

Signed-off-by: Fedora Release Engineering <releng@fedoraproject.org>

.cvsignore

@@ -1 +0,0 @@
-wise2.2.0.tar.gz

Makefile

@@ -1,21 +0,0 @@
-# Makefile for source rpm: wise2
-# $Id$
-NAME := wise2
-SPECFILE = $(firstword $(wildcard *.spec))
-
-define find-makefile-common
-for d in common ../common ../../common ; do if [ -f $$d/Makefile.common ] ; then if [ -f $$d/CVS/Root -a -w $$/Makefile.common ] ; then cd $$d ; cvs -Q update ; fi ; echo "$$d/Makefile.common" ; break ; fi ; done
-endef
-
-MAKEFILE_COMMON := $(shell $(find-makefile-common))
-
-ifeq ($(MAKEFILE_COMMON),)
-# attept a checkout
-define checkout-makefile-common
-test -f CVS/Root && { cvs -Q -d $$(cat CVS/Root) checkout common && echo "common/Makefile.common" ; } || { echo "ERROR: I can't figure out how to checkout the 'common' module." ; exit -1 ; } >&2
-endef
-
-MAKEFILE_COMMON := $(shell $(checkout-makefile-common))
-endif
-
-include $(MAKEFILE_COMMON)

dead.package

@@ -0,0 +1 @@
+Orphaned by upstream; no longer needed in Fedora

sources

@@ -1 +0,0 @@
-0584240f77885e37528e99e64535ab60  wise2.2.0.tar.gz

wise2-build.patch

@@ -1,10 +0,0 @@
---- src/makefile.orig	2007-04-11 07:52:41.000000000 -0700
-+++ src/makefile	2007-04-11 07:53:04.000000000 -0700
-@@ -89,7 +89,6 @@
- bin : 
- 	mkdir bin
- 	mv models/pswdb models/psw models/genewisedb models/estwisedb models/estwise models/genewise models/dba models/dnal models/genomewise ./bin
--	csh welcome.csh
- 
- libs : 
- 	(cd base   ; make CC="$(CC)" CFLAGS="$(CFLAGS)" libwisebase.a )

wise2.spec

@@ -1,88 +0,0 @@
-Name:           wise2
-Version:        2.2.0
-Release:        4%{?dist}
-Summary:        Tools for comparison of biopolymers
-
-Group:          Applications/Engineering
-## Everything is licensed under a BSD-style license except for
-## the HMMer2 libraries and models directory which are GPLv2+
-## see LICENSE files for details. 
-License:        BSD and GPLv2+
-URL:            http://www.ebi.ac.uk/Wise2/
-Source0:        ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise%{version}.tar.gz
-Patch0:         wise2-build.patch
-BuildRoot:      %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
-
-%description
-Wise2 is a package focused on comparisons of biopolymers, commonly DNA
-sequence and protein sequence.  A strength of Wise2 is the
-comparison of DNA sequence at the level of its protein
-translation. This comparison allows the simultaneous prediction of
-gene structure with homology based alignment.
-
-%prep
-%setup -q -n wise%{version}
-
-## don't run "welcome.csh"
-%patch0 -p0
-
-## fix interpreter in examples
-sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' docs/gettex.pl
-## fix perms 
-chmod -x test_data/rrm.HMM
-
-## pull out licenses
-for i in base dynlibsrc dyc
-do
-    cp src/$i/LICENSE LICENSE.$i
-done
-cp src/models/GNULICENSE LICENSE.GPL
-
-%build
-cd src
-## removed "{?_smp_mflags}", does not support parallel build
-make CC=gcc CFLAGS="-c $RPM_OPT_FLAGS" all
-
-%install
-rm -rf $RPM_BUILD_ROOT
-cd src/bin
-%{__mkdir_p} $RPM_BUILD_ROOT%{_bindir}
-for i in dba dnal estwise estwisedb genewise genewisedb genomewise psw pswdb
-do
-    %{__install} $i $RPM_BUILD_ROOT/%{_bindir} 
-done
-cd -
-# install architecture-independent data and config files
-%{__mkdir_p} $RPM_BUILD_ROOT%{_datadir}/wise2
-cd wisecfg
-%{__install} -pm 644 * $RPM_BUILD_ROOT%{_datadir}/wise2
-
-# install scripts to automatically set the WISECONFIGDIR environment variable
-%{__mkdir_p} $RPM_BUILD_ROOT%{_sysconfdir}/profile.d
-echo "export WISECONFIGDIR=%{_datadir}/wise2/" > $RPM_BUILD_ROOT%{_sysconfdir}/profile.d/wise2.sh
-echo "setenv WISECONFIGDIR %{_datadir}/wise2/" > $RPM_BUILD_ROOT%{_sysconfdir}/profile.d/wise2.csh
-
-%clean
-rm -rf $RPM_BUILD_ROOT
-
-
-%files
-%defattr(-,root,root,-)
-%doc docs test_data
-%doc INSTALL LICENSE README LICENSE.base LICENSE.dynlibsrc LICENSE.dyc LICENSE.GPL
-%{_bindir}/*
-%{_datadir}/wise2
-%config(noreplace) %{_sysconfdir}/profile.d/*
-
-%changelog
-* Sat Feb  9 2008 Alex Lancaster <alexlan[AT]fedoraproject org> - 2.2.0-4
-- rebuilt for GCC 4.3 as requested by Fedora Release Engineering
-
-* Thu Aug 16 2007 Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-3
-- Clarify license as BSD and GPLv2+
-
-* Mon Apr 12 2007 Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-2
-- Pass $RPM_OPT_FLAGS to compiler as per suggestion from Ralf Corsepius.
-
-* Mon Apr 11 2007 Alex Lancaster <alexl@users.sourceforge.net> 2.2.0-1
-- Initial Fedora package.